Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

20885740 .. 20887666

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATGAAGGCAAGTTCGTGCTTAATGCAAATGAAGAATTACTGAAACAACAAAGCTTTTTCCCACCAAGTAGATCATGTTCGCAGAATTCGTATGTATCAGAGAGACGGTCAAGGGCAACCCACCATTTAAATTTTCCATCAAATACATGGATAAGTTTTATCTTATTAGAGATGGCCTCCTGTAGTTCTTCCCCATTTATCTCCCACTTTCTAACAAGACCAAACCACTTCTCTCCTTCCTCATCACAAATGCCGCCGCCTCCGCCACAAAATCTTCCTCCACAACCGCCACATTCTCCGACACCAAGTCAGCAGCTCAGCACAAGTTCATCCGAGCACCCGACGACACCGGTAAAAGAAGTGCAGAAAAAGCCATCCAAGACCAAAACCAAGGGAGACTCCACAGACTGGATAGCTTCCACGTTGACCAGAAGGTTTGGGATTGGTGCTGGCCTTGCTTGGGCTGCCTTTCTCACAGTTGGTGTAGTCTCTGAGCAAATTAAAACCCGCATTGAAGTCTCCCAACAAGAATCAAACACAAGGAATGTTGAGAAAGAAGAAGAGGTGGTGTTACCTAATGACATAAGATACTACGAGTTAAGAATGGGCGGCGGAGCTACTCCGAGGCCGGGGGACTTGGTGGTGATCGACCTGAAGGGCAAAGTAGAAGGCAGCGGACTAGTGTTTGTGGACACATTTGAGCGGGAGAAGAAGTCATTGGCTCTGGTGGTGGGGTCCAGGCAGCCTTACAGCAAGGGAGTATGTGAAGGGATAGAGTATGTGATGAGATCCATGAAGGCAGGTGGCAAAAGGAGAGTGGTCGTTCCTCCAAGCTTGGGGTTCGGAGAAAATGGTGCAGATATGGGTCCTGGTCTGCAAATTCCTCCTTCTGCAACCCTAGAGTATATTATTGAGGTTGATAGAGTCTCAATTGCACCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

316

Amino Acids

34.54

Weight (kDa)

8.68

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	794
Acc36I	ACCTGC	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	706
AciI	CCGC	9 cut(s)	257, 260, 266, 290, 511, 612, 615, 678, 706
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	3 cut(s)	88, 133, 882
AcuI	CTGAAG	1 cut(s)	677
AfiI	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	518
AhdI	GACNNNNNGTC	1 cut(s)	309
AhlI	ACTAGT	1 cut(s)	682
AjnI	CCWGG	2 cut(s)	740, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	5 cut(s)	57, 319, 419, 620, 837
AluI	AGCT	5 cut(s)	57, 319, 419, 620, 837
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	5 cut(s)	100, 393, 496, 526, 934
AlwI	GGATC	1 cut(s)	786
AoxI	GGCC	3 cut(s)	177, 454, 629
ApeKI	GCWGC	4 cut(s)	316, 467, 675, 745
ApoI	RAATTY	3 cut(s)	88, 133, 882
AsiGI	ACCGGT	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	738, 869
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	738, 869
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	328, 454, 687, 757
BccI	CCATC	3 cut(s)	148, 169, 385
BciT130I	CCWGG	2 cut(s)	742, 873
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	5 cut(s)	100, 393, 496, 526, 934
BcuI	ACTAGT	1 cut(s)	682
BfaI	CTAG	2 cut(s)	683, 902
BfmI	CTRYAG	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	794
BisI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	7 cut(s)	258, 261, 318, 469, 614, 677, 747
Bme1390I	CCNGG	3 cut(s)	633, 742, 873
Bme18I	GGWCC	2 cut(s)	738, 869
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	738, 869
BmiI	GGNNCC	2 cut(s)	739, 870
BmrFI	CCNGG	3 cut(s)	633, 742, 873
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	393, 626, 632
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	742, 873
BseDI	CCNNGG	3 cut(s)	393, 626, 632
BseGI	GGATG	3 cut(s)	10, 332, 377
BseLI	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
BseMII	CTCAG	2 cut(s)	334, 486
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	4 cut(s)	328, 454, 687, 757
BsgI	GTGCAG	2 cut(s)	386, 879
BshFI	GGCC	3 cut(s)	179, 456, 631
BshTI	ACCGGT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	353, 632
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
BsmAI	GTCTC	5 cut(s)	100, 393, 496, 526, 934
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	179, 456, 631
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	74, 648, 791
Bsp1720I	GCTNAGC	1 cut(s)	320
BspACI	CCGC	9 cut(s)	257, 260, 266, 290, 511, 612, 615, 678, 706
BspANI	GGCC	3 cut(s)	179, 456, 631
BspCNI	CTCAG	2 cut(s)	333, 487
BspLI	GGNNCC	2 cut(s)	739, 870
BspMI	ACCTGC	1 cut(s)	794
BspPI	GGATC	1 cut(s)	786
BsrBI	CCGCTC	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	393, 626, 632
BssMI	GATC	3 cut(s)	74, 648, 791
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	742, 873
Bst4CI	ACNGT	2 cut(s)	111, 481
Bst6I	CTCTTC	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	320, 495
BstF5I	GGATG	3 cut(s)	10, 332, 377
BstKTI	GATC	3 cut(s)	77, 651, 794
BstMAI	GTCTC	5 cut(s)	100, 393, 496, 526, 934
BstMBI	GATC	3 cut(s)	74, 648, 791
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 373, 458, 467
BstNI	CCWGG	2 cut(s)	742, 873
BstSCI	CCNGG	3 cut(s)	631, 740, 871
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	4 cut(s)	328, 454, 687, 757
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	3 cut(s)	179, 456, 631
BtsCI	GGATG	3 cut(s)	10, 332, 377
BveI	ACCTGC	1 cut(s)	794
Cac8I	GCNNGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	738, 869
CspAI	ACCGGT	1 cut(s)	352
CviAII	CATG	4 cut(s)	78, 150, 796, 945
DdeI	CTNAG	2 cut(s)	320, 495
DpnI	GATC	3 cut(s)	76, 650, 793
DpnII	GATC	3 cut(s)	74, 648, 791
DraI	TTTAAA	1 cut(s)	132
DriI	GACNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	558
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	2 cut(s)	255, 630
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	738, 869
Eco57I	CTGAAG	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	740, 871
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	4 cut(s)	81, 153, 799, 948
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	4 cut(s)	77, 149, 795, 944
FauI	CCCGC	2 cut(s)	518, 699
Fnu4HI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
FokI	GGATG	3 cut(s)	17, 319, 364
Fsp4HI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
FspBI	CTAG	2 cut(s)	683, 902
GluI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
HaeIII	GGCC	3 cut(s)	179, 456, 631
HapII	CCGG	2 cut(s)	353, 632
Hin1II	CATG	4 cut(s)	81, 153, 799, 948
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	2 cut(s)	55, 835
HinfI	GANTC	3 cut(s)	401, 533, 927
HpaII	CCGG	2 cut(s)	353, 632
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	2 cut(s)	429, 694
Hpy188I	TCNGA	6 cut(s)	103, 303, 337, 496, 627, 848
Hpy8I	GTNNAC	2 cut(s)	429, 694
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	7 cut(s)	249, 429, 652, 665, 764, 793, 900
HpyCH4III	ACNGT	2 cut(s)	111, 481
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	7 cut(s)	29, 367, 860, 880, 896, 938, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 373, 458, 467
HpyF3I	CTNAG	2 cut(s)	320, 495
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	4 cut(s)	81, 153, 799, 948
Kzo9I	GATC	3 cut(s)	74, 648, 791
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	4 cut(s)	328, 454, 687, 757
MaeI	CTAG	2 cut(s)	683, 902
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	3 cut(s)	76, 650, 793
MbiI	CCGCTC	1 cut(s)	706
MboI	GATC	3 cut(s)	74, 648, 791
MboII	GAAGA	6 cut(s)	47, 183, 269, 572, 575, 724
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	6 cut(s)	38, 88, 133, 501, 882, 933
MlyI	GAGTC	2 cut(s)	395, 936
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	190, 253, 273, 291, 559, 621, 840, 897, 910
MseI	TTAA	4 cut(s)	24, 131, 504, 602
MslI	CAYNNNNRTG	1 cut(s)	943
MspA1I	CMGCKG	1 cut(s)	678
MspI	CCGG	2 cut(s)	353, 632
MspR9I	CCNGG	3 cut(s)	633, 742, 873
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	2 cut(s)	742, 873
MwoI	GCNNNNNNNGC	4 cut(s)	265, 373, 458, 467
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	3 cut(s)	74, 648, 791
NlaIII	CATG	4 cut(s)	81, 153, 799, 948
NlaIV	GGNNCC	2 cut(s)	739, 870
PaqCI	CACCTGC	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	533
PflMI	CCANNNNNTGG	1 cut(s)	411
PinAI	ACCGGT	1 cut(s)	352
PkrI	GCNGC	7 cut(s)	258, 261, 318, 469, 614, 677, 747
PleI	GAGTC	2 cut(s)	395, 935
PpsI	GAGTC	2 cut(s)	395, 935
PpuMI	RGGWCCY	1 cut(s)	869
Psp5II	RGGWCCY	1 cut(s)	869
Psp6I	CCWGG	2 cut(s)	740, 871
PspGI	CCWGG	2 cut(s)	740, 871
PspN4I	GGNNCC	2 cut(s)	739, 870
PspPI	GGNCC	2 cut(s)	738, 869
PspPPI	RGGWCCY	1 cut(s)	869
PsrI	GAACNNNNNNTAC	2 cut(s)	64, 96
PsuI	RGATCY	1 cut(s)	791
RseI	CAYNNNNRTG	1 cut(s)	943
SaqAI	TTAA	4 cut(s)	24, 131, 504, 602
SatI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
Sau3AI	GATC	3 cut(s)	74, 648, 791
Sau96I	GGNCC	2 cut(s)	738, 869
SchI	GAGTC	2 cut(s)	395, 936
ScrFI	CCNGG	3 cut(s)	633, 742, 873
SduI	GDGCHC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	738, 869
SmiI	ATTTAAAT	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	943
SpeI	ACTAGT	1 cut(s)	682
Sse9I	AATT	6 cut(s)	38, 88, 133, 501, 882, 933
SsiI	CCGC	9 cut(s)	257, 260, 266, 290, 511, 612, 615, 678, 706
SspMI	CTAG	2 cut(s)	683, 902
StyD4I	CCNGG	3 cut(s)	631, 740, 871
StyI	CCWWGG	1 cut(s)	393
SwaI	ATTTAAAT	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	111, 481
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	651
TasI	AATT	6 cut(s)	38, 88, 133, 501, 882, 933
TauI	GCSGC	3 cut(s)	259, 262, 615
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	24, 131, 504, 602
Tru9I	TTAA	4 cut(s)	24, 131, 504, 602
TseI	GCWGC	4 cut(s)	316, 467, 675, 745
TspDTI	ATGAA	4 cut(s)	21, 48, 321, 812
Van91I	CCANNNNNTGG	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	738, 869
XapI	RAATTY	3 cut(s)	88, 133, 882
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XspI	CTAG	2 cut(s)	683, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.