AT1G18740

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010852
Physical Location & Seq
Forward (+)
6463849 .. 6465476
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18740.1

Sequence Viewer

Length: 1149 bp
ATGCCAGCTACGGATTTTCAAGGATCATTTGGAAGGTCGTTGCTAAGTTTACGGCGAGACCAAGTTGACTCATCAACAGTCGTCTCCGGAAGTAGTAGCCACCACGAGCCAAGCACCATGGAGGTTGAGCTAGATTCGTTTCAAAGACAAGTCGCTGAGAAATTCATCGATCTCAACGCTTCTTCAAACGACCTTCTCTCTCTCGAATGGATCGGAAAGCTTCTTGATTCTTTCCTCTGTTGTCAAGAAGAGTTTCGAGCTATCGTATTCAACCACCGATCTCAGATCTCTAAATCTCCGATGGACCGTTTGATTTCAGATTACTTCGAACGGAGCATCAAAGCTCTAGATGTCTGTAACGCCATCCGCGACGGTATCGAACAGATCCGTCAATGGGAGAAACTTGCCGATATTGTGATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAAGGTCAGCTCCGGCGAGCTAAGAAAGCTCTGATTGATTTAGCAATCGGAATGCTTGACGAGAAAGATCATCCTTCTGGAACCAATCTAGCTCATCGTAACCGTTCATTCGGAAGAGTCAAAGACAGTCACCACCGTTCGATTGGTCATTTCAGATCTCTTTCTTGGAGTGTTTCAAGATCATGGTCAGCTTCTAAGCAGTTACAAGCTTTAGCGAGTAACTTGGCAACGCCTCGACCAAACGATGTCGTTGCTAGCAATGGTTTAGCTGTACCGGTTTACACAATGACTTCGGTTTTGCTTTTTGTGATGTGGGTTTTGGTAGCTGCGATTCCTTGTCAAGACCGTGGATTGCAAGTTAACTTCTTTGTGCCTAGGCATTTCCAATGGGCAGCTCCGGTTATGTCGTTGCACGATAAGATTGTTGAGGAATCTAAGAGAAGAGATAGGAAGAATTGTTGTGGTTTGCTTAAGGAGATTGATAGGATTGAGAAGAGTTCGAGGTTGATGAATGAATTGATCGATTCGATTCATTTCCCGTTGAATGATGACAAGGAAGTTGAGGTGAAACAGAGAGTTGATGAGCTTGTTCAAGTTCGTGAAGCTTTGAGAAATGGTTTGGATCCGTTTGAGAGGAAAGTAAGAGAAGTTTTCCATCGGATTGTGAGAAGCAGAACTGAGAGTCTTGATTCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

382

Amino Acids

43.54

Weight (kDa)

7.72

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 1 - 382 9.5e-190 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18740 AT1G74450
fragaria_vesca FvH4_2g13680 FvH4_2g13680
malus_domestica MD05G1026700.v1.1 MD10G1025900.v1.1
prunus_persica Prupe.8G031200_v2.0.a1
pyrus_communis pycom05g01850 pycom10g01740
rosa_chinensis RchiOBHm_Chr6g0275361
rosa_laevigata RLG00000013471
rosa_multiflora Rmu_co8417379.1_g000001 Rmu_sc0004143.1_g000001 Rmu_sc0019329.1_g000002
rosa_roxburghii Rroxscaffold_7G00193380
rosa_rugosa Rorug06G0091100
rosa_samantha Rh6AG205000 Rh6CG210200 Rh6DG200500
rosa_wichuraiana Rw6G017790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 86
AciI CCGC 1 cut(s) 367
AclWI GGATC 5 cut(s) 31, 218, 379, 1067, 1080
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 1 cut(s) 394
AflII CTTAAG 1 cut(s) 920
AgeI ACCGGT 1 cut(s) 724
AgsI TTSAA 7 cut(s) 20, 143, 186, 271, 627, 994, 1043
Alw26I GTCTC 2 cut(s) 51, 88
AlwI GGATC 5 cut(s) 31, 218, 379, 1067, 1080
Aor13HI TCCGGA 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 776, 842
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 730, 762
AsiGI ACCGGT 1 cut(s) 724
Asp700I GAANNNNTTC 1 cut(s) 252
AspA2I CCTAGG 1 cut(s) 824
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 428, 572, 1027
AsuII TTCGAA 1 cut(s) 327
AsuNHI GCTAGC 1 cut(s) 704
AvaII GGWCC 1 cut(s) 304
AvrII CCTAGG 1 cut(s) 824
BamHI GGATCC 1 cut(s) 1072
BauI CACGAG 1 cut(s) 104
BbvI GCAGC 2 cut(s) 763, 854
BccI CCATC 3 cut(s) 295, 371, 1113
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BcoDI GTCTC 2 cut(s) 51, 88
BfaI CTAG 5 cut(s) 131, 347, 539, 705, 825
BfrI CTTAAG 1 cut(s) 920
BglII AGATCT 2 cut(s) 285, 605
BisI GCNGC 2 cut(s) 777, 843
BlnI CCTAGG 1 cut(s) 824
BlsI GCNGC 2 cut(s) 778, 844
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 2 cut(s) 532, 1074
BmsI GCATC 1 cut(s) 345
BmtI GCTAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 327
Bsa29I ATCGAT 2 cut(s) 168, 972
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 117, 796, 824
BsaWI WCCGGW 3 cut(s) 86, 724, 847
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 724
Bse3DI GCAATG 1 cut(s) 715
BseAI TCCGGA 1 cut(s) 86
BseCI ATCGAT 2 cut(s) 168, 972
BseDI CCNNGG 3 cut(s) 117, 796, 824
BseGI GGATG 2 cut(s) 363, 520
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 3 cut(s) 147, 296, 1119
BseXI GCAGC 2 cut(s) 763, 854
Bsh1236I CGCG 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 447
BshTI ACCGGT 1 cut(s) 724
BshVI ATCGAT 2 cut(s) 168, 972
BsiEI CGRYCG 1 cut(s) 447
BsiSI CCGG 4 cut(s) 87, 463, 725, 848
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 51, 88
BsmBI CGTCTC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 507
Bso31I GGTCTC 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 327
Bsp13I TCCGGA 1 cut(s) 86
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 367
BspCNI CTCAG 3 cut(s) 148, 295, 1120
BspDI ATCGAT 2 cut(s) 168, 972
BspEI TCCGGA 1 cut(s) 86
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 532, 1074
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 5 cut(s) 31, 218, 379, 1067, 1080
BspT104I TTCGAA 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 920
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 724
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 3 cut(s) 117, 796, 824
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 2 cut(s) 117, 824
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 8 cut(s) 79, 308, 374, 440, 554, 578, 587, 797
Bst6I CTCTTC 4 cut(s) 243, 559, 886, 938
BstAFI CTTAAG 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 6, 468, 706
BstDEI CTNAG 7 cut(s) 44, 156, 282, 471, 645, 885, 1128
BstDSI CCRYGG 2 cut(s) 117, 796
BstF5I GGATG 2 cut(s) 363, 520
BstFNI CGCG 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 51, 88
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 763, 854
BstX2I RGATCY 4 cut(s) 285, 384, 605, 1072
BstYI RGATCY 4 cut(s) 285, 384, 605, 1072
Bsu15I ATCGAT 2 cut(s) 168, 972
BsuTUI ATCGAT 2 cut(s) 168, 972
BtgI CCRYGG 2 cut(s) 117, 796
BtsCI GGATG 2 cut(s) 363, 520
Cac8I GCNNGC 3 cut(s) 6, 468, 706
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 304
ClaI ATCGAT 2 cut(s) 168, 972
Csp6I GTAC 1 cut(s) 722
CspAI ACCGGT 1 cut(s) 724
CviAII CATG 2 cut(s) 118, 633
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 7 cut(s) 44, 156, 282, 471, 645, 885, 1128
Eam1104I CTCTTC 4 cut(s) 243, 559, 886, 938
EarI CTCTTC 4 cut(s) 243, 559, 886, 938
Eco130I CCWWGG 2 cut(s) 117, 824
Eco31I GGTCTC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 117, 824
ErhI CCWWGG 2 cut(s) 117, 824
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 2 cut(s) 121, 636
FaiI YATR 3 cut(s) 119, 634, 854
FatI CATG 2 cut(s) 117, 632
Fnu4HI GCNGC 2 cut(s) 777, 843
FokI GGATG 2 cut(s) 350, 507
Fsp4HI GCNGC 2 cut(s) 777, 843
FspBI CTAG 5 cut(s) 131, 347, 539, 705, 825
GluI GCNGC 2 cut(s) 777, 843
HapII CCGG 4 cut(s) 87, 463, 725, 848
Hin1II CATG 2 cut(s) 121, 636
HincII GTYRAC 2 cut(s) 67, 811
HindII GTYRAC 2 cut(s) 67, 811
HindIII AAGCTT 3 cut(s) 218, 657, 1053
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 4 cut(s) 87, 463, 725, 848
HphI GGTGA 3 cut(s) 428, 572, 1027
Hpy166II GTNNAC 4 cut(s) 50, 67, 730, 811
Hpy8I GTNNAC 4 cut(s) 50, 67, 730, 811
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 4 cut(s) 27, 203, 446, 534
HpyCH4III ACNGT 8 cut(s) 79, 308, 374, 440, 554, 578, 587, 797
HpyCH4V TGCA 2 cut(s) 805, 862
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 7 cut(s) 44, 156, 282, 471, 645, 885, 1128
Hsp92II CATG 2 cut(s) 121, 636
Kpn2I TCCGGA 1 cut(s) 86
KspAI GTTAAC 1 cut(s) 811
LmnI GCTCC 3 cut(s) 333, 465, 850
LpnPI CCDG 6 cut(s) 18, 100, 476, 513, 738, 861
Lsp1109I GCAGC 2 cut(s) 763, 854
LweI GCATC 1 cut(s) 345
MaeI CTAG 5 cut(s) 131, 347, 539, 705, 825
MaeIII GTNAC 6 cut(s) 356, 434, 548, 578, 651, 668
MboII GAAGA 6 cut(s) 174, 260, 576, 903, 913, 955
MflI RGATCY 4 cut(s) 285, 384, 605, 1072
MluCI AATT 3 cut(s) 161, 904, 965
MlyI GAGTC 3 cut(s) 62, 576, 1141
MnlI CCTC 7 cut(s) 115, 245, 693, 871, 945, 1006, 1077
MroI TCCGGA 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 2 cut(s) 810, 921
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 4 cut(s) 87, 463, 725, 848
Mva1269I GAATGC 1 cut(s) 507
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 476
NcoI CCATGG 1 cut(s) 117
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 2 cut(s) 121, 636
NlaIV GGNNCC 2 cut(s) 532, 1074
NmuCI GTSAC 2 cut(s) 434, 578
NspV TTCGAA 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 7 cut(s) 134, 227, 781, 881, 974, 979, 1139
PinAI ACCGGT 1 cut(s) 724
PkrI GCNGC 2 cut(s) 778, 844
Ple19I CGATCG 1 cut(s) 447
PleI GAGTC 3 cut(s) 62, 575, 1140
PpsI GAGTC 3 cut(s) 62, 575, 1140
PspN4I GGNNCC 2 cut(s) 532, 1074
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 4 cut(s) 285, 384, 605, 1072
PvuI CGATCG 1 cut(s) 447
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
SaqAI TTAA 2 cut(s) 810, 921
SatI GCNGC 2 cut(s) 777, 843
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 3 cut(s) 62, 576, 1141
SfaNI GCATC 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 327
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 3 cut(s) 161, 904, 965
SsiI CCGC 1 cut(s) 367
SspMI CTAG 5 cut(s) 131, 347, 539, 705, 825
StyI CCWWGG 2 cut(s) 117, 824
TaaI ACNGT 8 cut(s) 79, 308, 374, 440, 554, 578, 587, 797
TasI AATT 3 cut(s) 161, 904, 965
TfiI GAWTC 7 cut(s) 134, 227, 781, 881, 974, 979, 1139
Tru1I TTAA 2 cut(s) 810, 921
Tru9I TTAA 2 cut(s) 810, 921
TseFI GTSAC 2 cut(s) 434, 578
TseI GCWGC 2 cut(s) 776, 842
Tsp45I GTSAC 2 cut(s) 434, 578
TspDTI ATGAA 5 cut(s) 154, 546, 971, 974, 978
TspGWI ACGGA 4 cut(s) 26, 346, 377, 1065
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 590
XmaJI CCTAGG 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 5 cut(s) 131, 347, 539, 705, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.