Rmu_co8417379.1_g000001

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8417379.1
OG0010852
Physical Location & Seq
Reverse (-)
219 .. 1286
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8417379.1_g000001.1.cds

Sequence Viewer

Length: 1068 bp
atggacggcgcccaagctctcgacctcgacaccttccagacccacgtcgccgattgcttccaacacctctcctccccctcccaagacctcctctccctctcctggctccgcgacctcctcgacggcttcctccgcattcaccaccagttcaagctcctcctcctctccaccccaaaatccaacgtcagcaggcccgccgtcgaccgcctcctctccgattacttcgagcgcagcgtcaaggccctcgacgtctgcaatgcgattcgcgacgggattgagcagatgaggcagtggcagaagctcttggagattgtgctctgcgctctcgaccgggaccggactctcggcgaaggccagttccggcgggccaagaaggccctgatagatttggctattgcaatgctagacgacaaggacagctccaacaacaccaccctcgcccaccgcaaccggtcctttggccggagcaacgccccggccaaagactaccggtcgatgggccacttccgatctctgtcgtggagcgtctcgcggtcgtggtcggcggcgaggcagctacaggcgattgggaacaacctctgcgcgccgaggcccaatgaagtcgtggcgaccaatgggctggcgtcggctgtgttcaccatcaattctgttctactgttcgtaatgttggcgctggtggcggcgattccgtgccaggaccgcggcctccaggtccacttcacgattccgaggaccttcgggtgggcggcgccgctgctttcgctgcacgagaggatactggaggagtcgaagcggcgggaccggaggaacgcctgcgcgcttttgaaggagattcatcagatcgagaaatgttcccgggtcataagcgaattggctgattcggttcagtttccgttgagtgaggagaaagaaggggaggtcaggcagagagttcaggagctttcgcagctctgcgagggcataaaggaggggttggaccctctggaaagacaggtcagggaggtcttccatggaattgtgcggagcagaacagaggggatcgactctttgggaaagaccaatgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

355

Amino Acids

40.08

Weight (kDa)

8.12

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18740 AT1G74450
fragaria_vesca FvH4_2g13680 FvH4_2g13680
malus_domestica MD05G1026700.v1.1 MD10G1025900.v1.1
prunus_persica Prupe.8G031200_v2.0.a1
pyrus_communis pycom05g01850 pycom10g01740
rosa_chinensis RchiOBHm_Chr6g0275361
rosa_laevigata RLG00000013471
rosa_multiflora Rmu_co8417379.1_g000001 Rmu_sc0004143.1_g000001 Rmu_sc0019329.1_g000002
rosa_roxburghii Rroxscaffold_7G00193380
rosa_rugosa Rorug06G0091100
rosa_samantha Rh6AG205000 Rh6CG210200 Rh6DG200500
rosa_wichuraiana Rw6G017790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccB1I GGYRCC 2 cut(s) 8, 748
AccI GTMKAC 1 cut(s) 201
AccII CGCG 6 cut(s) 111, 267, 532, 584, 702, 818
AclWI GGATC 1 cut(s) 1046
AcoI YGGCCR 2 cut(s) 460, 477
AcyI GRCGYC 4 cut(s) 9, 249, 623, 749
AfiI CCNNNNNNNGG 4 cut(s) 102, 462, 496, 741
AgeI ACCGGT 2 cut(s) 450, 489
AgsI TTSAA 2 cut(s) 151, 826
AhdI GACNNNNNGTC 1 cut(s) 490
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 3 cut(s) 101, 693, 708
AluBI AGCT 7 cut(s) 17, 154, 301, 420, 556, 940, 949
AluI AGCT 7 cut(s) 17, 154, 301, 420, 556, 940, 949
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 1 cut(s) 1046
Ama87I CYCGRG 1 cut(s) 855
ApeKI GCWGC 5 cut(s) 231, 553, 754, 763, 946
AsiGI ACCGGT 2 cut(s) 450, 489
AspLEI GCGC 9 cut(s) 11, 231, 323, 584, 586, 673, 751, 818, 820
AsuC2I CCSGG 4 cut(s) 332, 476, 856, 857
AsuHPI GGTGA 2 cut(s) 131, 628
AvaI CYCGRG 1 cut(s) 855
AvaII GGWCC 7 cut(s) 334, 453, 697, 712, 732, 799, 976
BanI GGYRCC 2 cut(s) 8, 748
BauI CACGAG 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 997
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 5 cut(s) 243, 565, 741, 750, 958
BccI CCATC 2 cut(s) 490, 647
BceAI ACGGC 3 cut(s) 22, 139, 182
BciT130I CCWGG 3 cut(s) 103, 695, 710
BciVI GTATCC 1 cut(s) 768
BcnI CCSGG 4 cut(s) 332, 476, 856, 857
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 557
BfoI RGCGCY 3 cut(s) 12, 674, 752
BfuI GTATCC 1 cut(s) 768
BglI GCCNNNNNGGC 1 cut(s) 374
Bme1390I CCNGG 7 cut(s) 103, 332, 476, 695, 710, 856, 857
Bme18I GGWCC 7 cut(s) 334, 453, 697, 712, 732, 799, 976
BmeRI GACNNNNNGTC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 855
BmgBI CACGTC 1 cut(s) 46
BmiI GGNNCC 6 cut(s) 10, 107, 335, 750, 800, 978
BmrFI CCNGG 7 cut(s) 103, 332, 476, 695, 710, 856, 857
BoxI GACNNNNGTC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 997
BpmI CTGGAG 2 cut(s) 692, 800
BpuMI CCSGG 4 cut(s) 332, 476, 856, 857
BsaHI GRCGYC 4 cut(s) 9, 249, 623, 749
BsaJI CCNNGG 6 cut(s) 474, 587, 700, 728, 855, 1009
BsaWI WCCGGW 4 cut(s) 336, 450, 489, 801
BsaXI ACNNNNNCTCC 4 cut(s) 56, 77, 86, 107
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 462, 496, 741
Bse118I RCCGGY 2 cut(s) 450, 489
Bse1I ACTGG 3 cut(s) 145, 355, 783
Bse3DI GCAATG 2 cut(s) 262, 405
BseBI CCWGG 3 cut(s) 103, 695, 710
BseDI CCNNGG 6 cut(s) 474, 587, 700, 728, 855, 1009
BseLI CCNNNNNNNGG 4 cut(s) 102, 462, 496, 741
BseMI GCAATG 2 cut(s) 262, 405
BseNI ACTGG 3 cut(s) 145, 355, 783
BsePI GCGCGC 2 cut(s) 582, 816
BseRI GAGGAG 9 cut(s) 61, 80, 107, 146, 149, 152, 200, 797, 917
BseXI GCAGC 5 cut(s) 243, 565, 741, 750, 958
BsgI GTGCAG 1 cut(s) 749
Bsh1236I CGCG 6 cut(s) 111, 267, 532, 584, 702, 818
Bsh1285I CGRYCG 4 cut(s) 205, 331, 494, 536
BshNI GGYRCC 2 cut(s) 8, 748
BshTI ACCGGT 2 cut(s) 450, 489
BsiEI CGRYCG 4 cut(s) 205, 331, 494, 536
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 9 cut(s) 331, 337, 361, 451, 463, 476, 490, 802, 856
BslFI GGGAC 2 cut(s) 347, 812
BslI CCNNNNNNNGG 4 cut(s) 102, 462, 496, 741
BsmAI GTCTC 1 cut(s) 532
BsmBI CGTCTC 1 cut(s) 532
BsmFI GGGAC 2 cut(s) 347, 812
BsmI GAATGC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 855
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 3 cut(s) 509, 840, 1038
Bsp19I CCATGG 1 cut(s) 1009
Bsp68I TCGCGA 1 cut(s) 267
BspFNI CGCG 6 cut(s) 111, 267, 532, 584, 702, 818
BspLI GGNNCC 6 cut(s) 10, 107, 335, 750, 800, 978
BspPI GGATC 1 cut(s) 1046
BspT107I GGYRCC 2 cut(s) 8, 748
BsrDI GCAATG 2 cut(s) 262, 405
BsrFI RCCGGY 2 cut(s) 450, 489
BsrI ACTGG 3 cut(s) 145, 355, 783
BssAI RCCGGY 2 cut(s) 450, 489
BssECI CCNNGG 6 cut(s) 474, 587, 700, 728, 855, 1009
BssHII GCGCGC 2 cut(s) 582, 816
BssMI GATC 3 cut(s) 509, 840, 1038
BssNI GRCGYC 4 cut(s) 9, 249, 623, 749
BssSI CACGAG 1 cut(s) 767
BssT1I CCWWGG 1 cut(s) 1009
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 3 cut(s) 103, 695, 710
Bst4CI ACNGT 1 cut(s) 657
BstACI GRCGYC 4 cut(s) 9, 249, 623, 749
BstC8I GCNNGC 7 cut(s) 191, 195, 366, 584, 621, 814, 818
BstDSI CCRYGG 2 cut(s) 700, 1009
BstFNI CGCG 6 cut(s) 111, 267, 532, 584, 702, 818
BstH2I RGCGCY 3 cut(s) 12, 674, 752
BstHHI GCGC 9 cut(s) 11, 231, 323, 584, 586, 673, 751, 818, 820
BstKTI GATC 3 cut(s) 512, 843, 1041
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 3 cut(s) 509, 840, 1038
BstMCI CGRYCG 4 cut(s) 205, 331, 494, 536
BstMWI GCNNNNNNNGC 8 cut(s) 132, 286, 374, 677, 699, 760, 763, 946
BstNI CCWGG 3 cut(s) 103, 695, 710
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 7 cut(s) 101, 330, 474, 693, 708, 854, 855
BstSFI CTRYAG 1 cut(s) 557
BstUI CGCG 6 cut(s) 111, 267, 532, 584, 702, 818
BstV1I GCAGC 5 cut(s) 243, 565, 741, 750, 958
BstV2I GAAGAC 1 cut(s) 997
BstXI CCANNNNNNTGG 1 cut(s) 619
BsuI GTATCC 1 cut(s) 768
BtgI CCRYGG 2 cut(s) 700, 1009
BtrI CACGTC 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 296
BtuMI TCGCGA 1 cut(s) 267
Cac8I GCNNGC 7 cut(s) 191, 195, 366, 584, 621, 814, 818
CfoI GCGC 9 cut(s) 11, 231, 323, 584, 586, 673, 751, 818, 820
Cfr10I RCCGGY 2 cut(s) 450, 489
Cfr42I CCGCGG 1 cut(s) 703
Cfr9I CCCGGG 1 cut(s) 855
CseI GACGC 3 cut(s) 223, 514, 612
CspAI ACCGGT 2 cut(s) 450, 489
CviAII CATG 1 cut(s) 1010
DinI GGCGCC 2 cut(s) 10, 750
DpnI GATC 3 cut(s) 511, 842, 1040
DpnII GATC 3 cut(s) 509, 840, 1038
DriI GACNNNNNGTC 1 cut(s) 490
EaeI YGGCCR 2 cut(s) 460, 477
Eam1105I GACNNNNNGTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 1009
Eco47I GGWCC 7 cut(s) 334, 453, 697, 712, 732, 799, 976
Eco88I CYCGRG 1 cut(s) 855
EcoO109I RGGNCCY 3 cut(s) 241, 376, 732
EcoRII CCWGG 3 cut(s) 101, 693, 708
EcoT14I CCWWGG 1 cut(s) 1009
EgeI GGCGCC 2 cut(s) 10, 750
EheI GGCGCC 2 cut(s) 10, 750
ErhI CCWWGG 1 cut(s) 1009
Esp3I CGTCTC 1 cut(s) 532
FaeI CATG 1 cut(s) 1013
FaiI YATR 3 cut(s) 863, 962, 1011
FaqI GGGAC 2 cut(s) 347, 812
FatI CATG 1 cut(s) 1009
FauI CCCGC 3 cut(s) 202, 357, 789
FblI GTMKAC 1 cut(s) 201
FspBI CTAG 1 cut(s) 404
GlaI GCGC 9 cut(s) 10, 230, 322, 583, 585, 672, 750, 817, 819
GsuI CTGGAG 2 cut(s) 692, 800
HaeII RGCGCY 3 cut(s) 12, 674, 752
HapII CCGG 9 cut(s) 331, 337, 361, 451, 463, 476, 490, 802, 856
HgaI GACGC 3 cut(s) 223, 514, 612
HhaI GCGC 9 cut(s) 11, 231, 323, 584, 586, 673, 751, 818, 820
Hin1I GRCGYC 4 cut(s) 9, 249, 623, 749
Hin1II CATG 1 cut(s) 1013
Hin6I GCGC 9 cut(s) 9, 229, 321, 582, 584, 671, 749, 816, 818
HinP1I GCGC 9 cut(s) 9, 229, 321, 582, 584, 671, 749, 816, 818
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 8 cut(s) 262, 340, 685, 724, 785, 832, 878, 1043
HpaII CCGG 9 cut(s) 331, 337, 361, 451, 463, 476, 490, 802, 856
HphI GGTGA 2 cut(s) 131, 628
Hpy166II GTNNAC 3 cut(s) 202, 636, 715
Hpy188I TCNGA 4 cut(s) 217, 509, 729, 840
Hpy188III TCNNGA 8 cut(s) 20, 37, 266, 326, 721, 844, 935, 983
Hpy8I GTNNAC 3 cut(s) 202, 636, 715
Hpy99I CGWCG 6 cut(s) 50, 125, 203, 251, 272, 628
HpyAV CCTTC 6 cut(s) 43, 344, 367, 745, 820, 905
HpyCH4III ACNGT 1 cut(s) 657
HpyCH4IV ACGT 3 cut(s) 45, 183, 249
HpyCH4V TGCA 3 cut(s) 255, 398, 766
HpyF10VI GCNNNNNNNGC 8 cut(s) 132, 286, 374, 677, 699, 760, 763, 946
HpySE526I ACGT 3 cut(s) 45, 183, 249
Hsp92I GRCGYC 4 cut(s) 9, 249, 623, 749
Hsp92II CATG 1 cut(s) 1013
HspAI GCGC 9 cut(s) 9, 229, 321, 582, 584, 671, 749, 816, 818
KasI GGCGCC 2 cut(s) 8, 748
KspI CCGCGG 1 cut(s) 703
Kzo9I GATC 3 cut(s) 509, 840, 1038
LmnI GCTCC 7 cut(s) 111, 159, 425, 465, 522, 937, 1023
Lsp1109I GCAGC 5 cut(s) 243, 565, 741, 750, 958
MaeI CTAG 1 cut(s) 404
MaeII ACGT 3 cut(s) 45, 183, 249
MalI GATC 3 cut(s) 511, 842, 1040
MboI GATC 3 cut(s) 509, 840, 1038
MboII GAAGA 1 cut(s) 997
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 3 cut(s) 643, 869, 1014
Mly113I GGCGCC 2 cut(s) 9, 749
MlyI GAGTC 3 cut(s) 334, 794, 1037
MmeI TCCRAC 4 cut(s) 85, 204, 447, 954
MspA1I CMGCKG 2 cut(s) 702, 754
MspI CCGG 9 cut(s) 331, 337, 361, 451, 463, 476, 490, 802, 856
MspR9I CCNGG 7 cut(s) 103, 332, 476, 695, 710, 856, 857
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 3 cut(s) 103, 695, 710
MvnI CGCG 6 cut(s) 111, 267, 532, 584, 702, 818
MwoI GCNNNNNNNGC 8 cut(s) 132, 286, 374, 677, 699, 760, 763, 946
NarI GGCGCC 2 cut(s) 9, 749
NciI CCSGG 4 cut(s) 332, 476, 856, 857
NcoI CCATGG 1 cut(s) 1009
NdeII GATC 3 cut(s) 509, 840, 1038
NlaIII CATG 1 cut(s) 1013
NlaIV GGNNCC 6 cut(s) 10, 107, 335, 750, 800, 978
NmeAIII GCCGAG 2 cut(s) 324, 612
NruI TCGCGA 1 cut(s) 267
PauI GCGCGC 2 cut(s) 582, 816
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 5 cut(s) 262, 685, 724, 832, 878
PinAI ACCGGT 2 cut(s) 450, 489
PleI GAGTC 3 cut(s) 334, 793, 1037
PluTI GGCGCC 2 cut(s) 12, 752
PpsI GAGTC 3 cut(s) 334, 793, 1037
PpuMI RGGWCCY 1 cut(s) 732
PshAI GACNNNNGTC 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 732
Psp6I CCWGG 3 cut(s) 101, 693, 708
PspGI CCWGG 3 cut(s) 101, 693, 708
PspN4I GGNNCC 6 cut(s) 10, 107, 335, 750, 800, 978
PspPPI RGGWCCY 1 cut(s) 732
PteI GCGCGC 2 cut(s) 582, 816
RruI TCGCGA 1 cut(s) 267
SacII CCGCGG 1 cut(s) 703
SalI GTCGAC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 509, 840, 1038
SchI GAGTC 3 cut(s) 334, 794, 1037
ScrFI CCNGG 7 cut(s) 103, 332, 476, 695, 710, 856, 857
SduI GDGCHC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 557
SfiI GGCCNNNNNGGCC 1 cut(s) 374
SfoI GGCGCC 2 cut(s) 10, 750
Sfr303I CCGCGG 1 cut(s) 703
SgrBI CCGCGG 1 cut(s) 703
SinI GGWCC 7 cut(s) 334, 453, 697, 712, 732, 799, 976
SmaI CCCGGG 1 cut(s) 857
Sse9I AATT 3 cut(s) 643, 869, 1014
SspDI GGCGCC 2 cut(s) 8, 748
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 7 cut(s) 101, 330, 474, 693, 708, 854, 855
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 1 cut(s) 657
TaiI ACGT 3 cut(s) 48, 186, 252
TasI AATT 3 cut(s) 643, 869, 1014
TauI GCSGC 6 cut(s) 548, 683, 705, 749, 754, 796
TfiI GAWTC 5 cut(s) 262, 685, 724, 832, 878
TscAI CASTG 1 cut(s) 296
TseI GCWGC 5 cut(s) 231, 553, 754, 763, 946
TspDTI ATGAA 2 cut(s) 612, 824
TspGWI ACGGA 2 cut(s) 678, 882
TspMI CCCGGG 1 cut(s) 855
TspRI CASTG 1 cut(s) 296
VpaK11BI GGWCC 7 cut(s) 334, 453, 697, 712, 732, 799, 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmaI CCCGGG 1 cut(s) 855
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 404
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.