pycom10g01740

UPF0496 protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
1844007 .. 1845207
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01740.1

Sequence Viewer

Length: 1161 bp
ATGCCAGCGACGGAATACTCGTCAGCTGGTTCCAACCAATTCGGACGGTCAATCTTCAGCCTCAGACGCGATCAGTTGAATTCAATGGAAACCCACGGCCTTTCAGGTGGCGGTGGCGGTGGTAGTGGTGGGTTGAACCTCGATTCCTTCCAAGCCCACGTCGCCGATTGCTTCCTCCAACTCTCCTCCTCCCCCCACGACCTCCTCTCCCTCCCATGGCTCCGAGACCTCCTCGACTCCTTCCTCCACATACACCAGGAGTTCAAAACCCTCCTCATCCTCTCCTCCACCAAAACCCACATCTCCAAACCCACCGTTGACCGCTACATCTCCGACTACTTCGAGCGCAGCGTCAAAGCCCTAGACGTCTGCAACGCCATCCGCGACGGAATCGAGGAGATGCGCCAGTGGCTCAAGGTGCTCGACATCGTCCTCGTCGCGCTTGACCGCGACAGGACACTGGGCGAGGGCCAATTTCGCCGCGCGAAGAAGGCTCTCGTTGACCTGGCCATCCCCACCGGAACCGCTCCTTCGGCCGAAACAACAACACAAAGGATCGATCACCAGCAGCAGCACCGGTCGCTCGGCCACTTCCGATCCCTATCCTGGAGCGTCTCGCGGTCGTGGTCGGCCGCGAGGCAGCTGCAGGCAATCGGGAACAATCTATACGCCCCGAGGCCCAATGAAATTGTGGCCTCCAGCGGGCTCGCCCCGGCGGTTTTCACAATCAATTCGGTTTTGCTGTTCGTAATGTGGGCCCTGGTGGCGGCGATCCCCTGCCAGGACAGGGGACTGCAGGTGCATTTCAACGTGCCGAGAAGCTTCGTGTGGGCGGGGTCAATGCTGTCTCTGCACGACCGGATTATGGACGAGTCGAAGCGGCGGGACCGGAGAAATGCCCGCGCATTGTTGAAGGAGATTCATCAGATCGAAAGGTGCTCGCGGGTGATCGGCGATCTGGCAGACTCCGCGCACTTCCCGCTTGCGGAGGCGAAGGAGAAGGAGGTGAGGGAGAGAGTGCAGGAACTGTCGAGTCTCTGCGAGGGGATAAAGGAGGGGTTGGATCCTCTGGAGCGGCAGGTGAGGGAGGTGTTCCATGGAATTGTAAAAAGCCGAACGGAGGGGATGGACTCGTACGGAAGAACCAATAACCCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

43.21

Weight (kDa)

7.77

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 1 - 378 6.7e-136 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010852)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 787, 1069
AatII GACGTC 1 cut(s) 369
Acc36I ACCTGC 2 cut(s) 787, 1069
AccBSI CCGCTC 2 cut(s) 527, 1075
AclWI GGATC 5 cut(s) 563, 591, 766, 1058, 1071
AcoI YGGCCR 4 cut(s) 507, 534, 586, 630
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 1 cut(s) 1136
AfiI CCNNNNNNNGG 9 cut(s) 216, 606, 702, 766, 781, 787, 865, 985, 1120
AgeI ACCGGT 1 cut(s) 576
AgsI TTSAA 6 cut(s) 79, 84, 136, 265, 808, 913
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 5 cut(s) 255, 504, 605, 759, 780
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 3 cut(s) 26, 643, 822
AluI AGCT 3 cut(s) 26, 643, 822
Alw21I GWGCWC 2 cut(s) 423, 941
Alw26I GTCTC 4 cut(s) 219, 619, 852, 1040
AlwI GGATC 5 cut(s) 563, 591, 766, 1058, 1071
AlwNI CAGNNNCTG 1 cut(s) 1027
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 9 cut(s) 97, 469, 507, 534, 586, 630, 677, 693, 756
ApaI GGGCCC 1 cut(s) 760
ApeKI GCWGC 5 cut(s) 348, 568, 571, 640, 643
ApoI RAATTY 1 cut(s) 79
AsiGI ACCGGT 1 cut(s) 576
AspLEI GCGC 6 cut(s) 348, 405, 442, 485, 905, 973
AspS9I GGNCC 5 cut(s) 469, 678, 756, 757, 886
AsuC2I CCSGG 1 cut(s) 713
AsuHPI GGTGA 4 cut(s) 554, 958, 1018, 1093
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 1 cut(s) 886
BaeGI GKGCMC 1 cut(s) 760
BalI TGGCCA 1 cut(s) 509
BamHI GGATCC 1 cut(s) 1063
BanII GRGCYC 2 cut(s) 708, 760
Bbv12I GWGCWC 2 cut(s) 423, 941
BbvI GCAGC 5 cut(s) 360, 580, 583, 630, 652
BccI CCATC 3 cut(s) 386, 518, 1120
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 625, 659
BciT130I CCWGG 5 cut(s) 257, 506, 607, 761, 782
BcnI CCSGG 1 cut(s) 713
BcoDI GTCTC 4 cut(s) 219, 619, 852, 1040
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 2 cut(s) 644, 794
BfuAI ACCTGC 2 cut(s) 787, 1069
BglI GCCNNNNNGGC 1 cut(s) 764
Bme1390I CCNGG 6 cut(s) 257, 506, 607, 713, 761, 782
Bme18I GGWCC 1 cut(s) 886
BmeT110I CYCGRG 1 cut(s) 673
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 5 cut(s) 469, 678, 756, 757, 886
BmiI GGNNCC 6 cut(s) 31, 221, 523, 758, 887, 1065
BmrFI CCNGG 6 cut(s) 257, 506, 607, 713, 761, 782
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 390
BmuI ACTGGG 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 3 cut(s) 628, 682, 1091
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 713
Bsa29I ATCGAT 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 6 cut(s) 94, 215, 674, 711, 759, 1096
BsaWI WCCGGW 4 cut(s) 518, 576, 858, 888
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 9 cut(s) 216, 606, 702, 766, 781, 787, 865, 985, 1120
Bse118I RCCGGY 1 cut(s) 576
Bse1I ACTGG 2 cut(s) 406, 465
Bse8I GATNNNNATC 1 cut(s) 601
BseBI CCWGG 5 cut(s) 257, 506, 607, 761, 782
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 6 cut(s) 94, 215, 674, 711, 759, 1096
BseGI GGATG 4 cut(s) 276, 378, 510, 1131
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 9 cut(s) 216, 606, 702, 766, 781, 787, 865, 985, 1120
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 406, 465
BseRI GAGGAG 7 cut(s) 175, 178, 194, 221, 263, 274, 410
BseSI GKGCMC 1 cut(s) 760
BseX3I CGGCCG 2 cut(s) 534, 630
BseXI GCAGC 5 cut(s) 360, 580, 583, 630, 652
BsgI GTGCAG 2 cut(s) 836, 1040
Bsh1285I CGRYCG 5 cut(s) 537, 581, 623, 633, 859
BshFI GGCC 9 cut(s) 99, 471, 509, 536, 588, 632, 679, 695, 758
BshTI ACCGGT 1 cut(s) 576
BshVI ATCGAT 1 cut(s) 558
BsiEI CGRYCG 5 cut(s) 537, 581, 623, 633, 859
BsiHKAI GWGCWC 2 cut(s) 423, 941
BsiHKCI CYCGRG 1 cut(s) 673
BsiSI CCGG 5 cut(s) 519, 577, 713, 859, 889
BsiWI CGTACG 1 cut(s) 1134
BslFI GGGAC 2 cut(s) 804, 899
BslI CCNNNNNNNGG 9 cut(s) 216, 606, 702, 766, 781, 787, 865, 985, 1120
BsmAI GTCTC 4 cut(s) 219, 619, 852, 1040
BsmBI CGTCTC 1 cut(s) 619
BsmFI GGGAC 2 cut(s) 804, 899
BsnI GGCC 9 cut(s) 99, 471, 509, 536, 588, 632, 679, 695, 758
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 673
Bsp120I GGGCCC 1 cut(s) 756
Bsp1286I GDGCHC 4 cut(s) 423, 708, 760, 941
Bsp143I GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
Bsp19I CCATGG 2 cut(s) 215, 1096
BspANI GGCC 9 cut(s) 99, 471, 509, 536, 588, 632, 679, 695, 758
BspCNI CTCAG 1 cut(s) 75
BspDI ATCGAT 1 cut(s) 558
BspLI GGNNCC 6 cut(s) 31, 221, 523, 758, 887, 1065
BspMAI CTGCAG 2 cut(s) 648, 798
BspMI ACCTGC 2 cut(s) 787, 1069
BspPI GGATC 5 cut(s) 563, 591, 766, 1058, 1071
BspTNI GGTCTC 1 cut(s) 219
BsrBI CCGCTC 2 cut(s) 527, 1075
BsrFI RCCGGY 1 cut(s) 576
BsrI ACTGG 2 cut(s) 406, 465
BssAI RCCGGY 1 cut(s) 576
BssECI CCNNGG 6 cut(s) 94, 215, 674, 711, 759, 1096
BssMI GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 215, 1096
Bst2UI CCWGG 5 cut(s) 257, 506, 607, 761, 782
Bst4CI ACNGT 3 cut(s) 48, 316, 1029
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 7 cut(s) 6, 648, 704, 708, 901, 941, 984
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 3 cut(s) 94, 215, 1096
BstF5I GGATG 4 cut(s) 276, 378, 510, 1131
BstHHI GCGC 6 cut(s) 348, 405, 442, 485, 905, 973
BstKTI GATC 9 cut(s) 73, 558, 562, 599, 774, 930, 951, 958, 1066
BstMAI GTCTC 4 cut(s) 219, 619, 852, 1040
BstMBI GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
BstMCI CGRYCG 5 cut(s) 537, 581, 623, 633, 859
BstNI CCWGG 5 cut(s) 257, 506, 607, 761, 782
BstSCI CCNGG 6 cut(s) 255, 504, 605, 711, 759, 780
BstSFI CTRYAG 2 cut(s) 644, 794
BstSLI GKGCMC 1 cut(s) 760
BstV1I GCAGC 5 cut(s) 360, 580, 583, 630, 652
BstX2I RGATCY 1 cut(s) 1063
BstYI RGATCY 1 cut(s) 1063
BstZI CGGCCG 2 cut(s) 534, 630
Bsu15I ATCGAT 1 cut(s) 558
BsuRI GGCC 9 cut(s) 99, 471, 509, 536, 588, 632, 679, 695, 758
BsuTUI ATCGAT 1 cut(s) 558
BtgI CCRYGG 3 cut(s) 94, 215, 1096
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 4 cut(s) 276, 378, 510, 1131
BtsIMutI CAGTG 2 cut(s) 413, 458
BveI ACCTGC 2 cut(s) 787, 1069
Cac8I GCNNGC 7 cut(s) 6, 648, 704, 708, 901, 941, 984
CaiI CAGNNNCTG 1 cut(s) 1027
CfoI GCGC 6 cut(s) 348, 405, 442, 485, 905, 973
Cfr10I RCCGGY 1 cut(s) 576
Cfr13I GGNCC 5 cut(s) 469, 678, 756, 757, 886
ClaI ATCGAT 1 cut(s) 558
CseI GACGC 3 cut(s) 75, 340, 601
Csp6I GTAC 1 cut(s) 1135
CspAI ACCGGT 1 cut(s) 576
CviAII CATG 2 cut(s) 216, 1097
CviQI GTAC 1 cut(s) 1135
DdeI CTNAG 1 cut(s) 62
DpnI GATC 9 cut(s) 72, 557, 561, 598, 773, 929, 950, 957, 1065
DpnII GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
EaeI YGGCCR 4 cut(s) 507, 534, 586, 630
EagI CGGCCG 2 cut(s) 534, 630
EclXI CGGCCG 2 cut(s) 534, 630
Eco130I CCWWGG 2 cut(s) 215, 1096
Eco24I GRGCYC 2 cut(s) 708, 760
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 886
Eco52I CGGCCG 2 cut(s) 534, 630
Eco57I CTGAAG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 757
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 5 cut(s) 255, 504, 605, 759, 780
EcoT14I CCWWGG 2 cut(s) 215, 1096
EcoT38I GRGCYC 2 cut(s) 708, 760
ErhI CCWWGG 2 cut(s) 215, 1096
Esp3I CGTCTC 1 cut(s) 619
FaeI CATG 2 cut(s) 219, 1100
FaiI YATR 5 cut(s) 217, 251, 667, 866, 1098
FaqI GGGAC 2 cut(s) 804, 899
FatI CATG 2 cut(s) 215, 1096
FauI CCCGC 6 cut(s) 695, 826, 876, 908, 936, 987
FokI GGATG 4 cut(s) 263, 365, 497, 1138
FriOI GRGCYC 2 cut(s) 708, 760
FspBI CTAG 1 cut(s) 362
GlaI GCGC 6 cut(s) 347, 404, 441, 484, 904, 972
GsuI CTGGAG 3 cut(s) 628, 682, 1091
HaeIII GGCC 9 cut(s) 99, 471, 509, 536, 588, 632, 679, 695, 758
HapII CCGG 5 cut(s) 519, 577, 713, 859, 889
HgaI GACGC 3 cut(s) 75, 340, 601
HhaI GCGC 6 cut(s) 348, 405, 442, 485, 905, 973
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 2 cut(s) 219, 1100
Hin6I GCGC 6 cut(s) 346, 403, 440, 483, 903, 971
HinP1I GCGC 6 cut(s) 346, 403, 440, 483, 903, 971
HincII GTYRAC 2 cut(s) 319, 502
HindII GTYRAC 2 cut(s) 319, 502
HindIII AAGCTT 1 cut(s) 820
HinfI GANTC 8 cut(s) 143, 236, 390, 872, 919, 965, 1033, 1130
HpaII CCGG 5 cut(s) 519, 577, 713, 859, 889
HphI GGTGA 4 cut(s) 554, 958, 1018, 1093
Hpy166II GTNNAC 2 cut(s) 319, 502
Hpy188I TCNGA 6 cut(s) 44, 65, 224, 334, 596, 927
Hpy188III TCNNGA 2 cut(s) 655, 1070
Hpy8I GTNNAC 2 cut(s) 319, 502
Hpy99I CGWCG 4 cut(s) 13, 164, 389, 440
HpyAV CCTTC 7 cut(s) 157, 250, 484, 540, 907, 988, 994
HpyCH4III ACNGT 3 cut(s) 48, 316, 1029
HpyCH4IV ACGT 3 cut(s) 159, 366, 810
HpyCH4V TGCA 6 cut(s) 372, 646, 796, 802, 853, 1021
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 3 cut(s) 159, 366, 810
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 2 cut(s) 219, 1100
HspAI GCGC 6 cut(s) 346, 403, 440, 483, 903, 971
Kzo9I GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
LmnI GCTCC 4 cut(s) 225, 532, 609, 1072
Lsp1109I GCAGC 5 cut(s) 360, 580, 583, 630, 652
LweI GCATC 1 cut(s) 390
MaeI CTAG 1 cut(s) 362
MaeII ACGT 3 cut(s) 159, 366, 810
MalI GATC 9 cut(s) 72, 557, 561, 598, 773, 929, 950, 957, 1065
MbiI CCGCTC 2 cut(s) 527, 1075
MboI GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
MboII GAAGA 3 cut(s) 46, 499, 1152
MflI RGATCY 1 cut(s) 1063
MhlI GDGCHC 4 cut(s) 423, 708, 760, 941
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 6 cut(s) 38, 79, 473, 687, 730, 1101
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 5 cut(s) 230, 881, 959, 1042, 1124
MmeI TCCRAC 4 cut(s) 57, 202, 357, 1041
Mox20I TGGCCA 1 cut(s) 509
MscI TGGCCA 1 cut(s) 509
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 3 cut(s) 26, 643, 702
MspI CCGG 5 cut(s) 519, 577, 713, 859, 889
MspR9I CCNGG 6 cut(s) 257, 506, 607, 713, 761, 782
MvaI CCWGG 5 cut(s) 257, 506, 607, 761, 782
NciI CCSGG 1 cut(s) 713
NcoI CCATGG 2 cut(s) 215, 1096
NdeII GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
NlaIII CATG 2 cut(s) 219, 1100
NlaIV GGNNCC 6 cut(s) 31, 221, 523, 758, 887, 1065
NmeAIII GCCGAG 2 cut(s) 564, 840
PaqCI CACCTGC 2 cut(s) 787, 1069
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 348, 381
PfeI GAWTC 3 cut(s) 143, 390, 919
Pfl23II CGTACG 1 cut(s) 1134
PflFI GACNNNGTC 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 605
PinAI ACCGGT 1 cut(s) 576
PleI GAGTC 5 cut(s) 230, 880, 959, 1041, 1124
PpsI GAGTC 5 cut(s) 230, 880, 959, 1041, 1124
Psp6I CCWGG 5 cut(s) 255, 504, 605, 759, 780
PspGI CCWGG 5 cut(s) 255, 504, 605, 759, 780
PspLI CGTACG 1 cut(s) 1134
PspN4I GGNNCC 6 cut(s) 31, 221, 523, 758, 887, 1065
PspOMI GGGCCC 1 cut(s) 756
PspPI GGNCC 5 cut(s) 469, 678, 756, 757, 886
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
PstI CTGCAG 2 cut(s) 648, 798
PstNI CAGNNNCTG 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 1063
PsyI GACNNNGTC 1 cut(s) 428
PvuII CAGCTG 2 cut(s) 26, 643
RsaI GTAC 1 cut(s) 1136
RsaNI GTAC 1 cut(s) 1135
Sau3AI GATC 9 cut(s) 70, 555, 559, 596, 771, 927, 948, 955, 1063
Sau96I GGNCC 5 cut(s) 469, 678, 756, 757, 886
SchI GAGTC 5 cut(s) 230, 881, 959, 1042, 1124
ScrFI CCNGG 6 cut(s) 257, 506, 607, 713, 761, 782
SduI GDGCHC 4 cut(s) 423, 708, 760, 941
SfaNI GCATC 1 cut(s) 390
SfcI CTRYAG 2 cut(s) 644, 794
SinI GGWCC 1 cut(s) 886
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 6 cut(s) 38, 79, 473, 687, 730, 1101
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 6 cut(s) 255, 504, 605, 711, 759, 780
StyI CCWWGG 2 cut(s) 215, 1096
TaaI ACNGT 3 cut(s) 48, 316, 1029
TaiI ACGT 3 cut(s) 162, 369, 813
TaqI TCGA 9 cut(s) 141, 234, 342, 393, 423, 558, 875, 930, 1031
TasI AATT 6 cut(s) 38, 79, 473, 687, 730, 1101
TauI GCSGC 5 cut(s) 483, 635, 770, 883, 1078
TfiI GAWTC 3 cut(s) 143, 390, 919
TscAI CASTG 2 cut(s) 413, 465
TseI GCWGC 5 cut(s) 348, 568, 571, 640, 643
TspDTI ATGAA 2 cut(s) 699, 911
TspGWI ACGGA 4 cut(s) 26, 402, 1133, 1152
TspRI CASTG 2 cut(s) 413, 465
Tth111I GACNNNGTC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 886
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XspI CTAG 1 cut(s) 362
ZraI GACGTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.