RchiOBHm_Chr6g0275361

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010852
Physical Location & Seq
Reverse (-)
37148195 .. 37151982
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24705

Sequence Viewer

Length: 1071 bp
ATGGACGGCGCCAAAGCTCTCGACCTCGACACCTTCCAGACCCACGTCGCCGATTGCTTCCAACACCTCTCCTCCCCCTCCCAAGACCTCCTCTCCCTCTCCTGGCTCCGCGACCTCCTCGACGGCTTCCTCCGCATTCACCACCAGTTCAAGCTCCTCCTCCTCTCCACCCCAAAATCCAACGTCAGCAGCAGGCCCGCCGTCGACCGCCTCCTCTCCGATTACTTCGAGCGCAGCGTCAAGGCCCTCGACGTCTGCAATGCGATTCGCGACGGGATTGAGCAGATGAGGCAGTGGCAGAAGCTCTTGGAGATTGTGCTCTGCGCTCTCGACCGGGACCGGACTCTCGGCGAAGGCCAGTTCCGGCGAGCCAAGAAGGCCCTGATAGATTTGGCTATTGCAATGCTAGACGACAAGGACAGCTCCAACAACAACACCCTCGCCCACCGCAACCGGTCCTTTGGCCGGAGCAACGCCCCGGCCAAAGACTACCGGTCAATGGGCCACTTCCGATCTCTGTCGTGGAGCGTCTCGCGGTCGTGGTCGGCGGCGAGGCAGCTGCAGGCGATTGGGAACAACCTCTGCGCGCCGAGGCCCAATGAAGTCGTGGCGACCAATGGGCTGGCGTCGGCTGTGTTCACCATCAATTCTGTTCTACTGTTCGTAATGTGGGCGCTGGTGGCGGCGATTCCGTGCCAGGACCGCGGCCTCCAGGTCCACTTCACGATTCCGAGGACCTTCGGGTGGGCGGCGCCGCTGCTTTCGCTGCACGAGAGGATAATGGAGGAGTCGAAGCGGCGGGACCGGAGGAACGCCTGTGCGCTCTTGAAGGAGATTCATCAGATCGAGAAATGTTCCCGGGTCATAAGCGAATTGGCTGATTCGGTTCAGTTTCCGTTGAGTGAGGAGAAAGAAGGGGAGGTCAGGCAGAGAGTTCAGGAGCTTTCGCAGCTCTGCGAGGGGATAAAGGAGGGCTTGGACCCTCTGGAAAGACAGGTCAGGGAGGTCTTCCATGGAATTGTGCGGAGCAGAACAGAGGGGATGGACTCTTTGGGAAAGACCAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

356

Amino Acids

40.29

Weight (kDa)

8.41

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 7 - 351 9.4e-145 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18740 AT1G74450
fragaria_vesca FvH4_2g13680 FvH4_2g13680
malus_domestica MD05G1026700.v1.1 MD10G1025900.v1.1
prunus_persica Prupe.8G031200_v2.0.a1
pyrus_communis pycom05g01850 pycom10g01740
rosa_chinensis RchiOBHm_Chr6g0275361
rosa_laevigata RLG00000013471
rosa_multiflora Rmu_co8417379.1_g000001 Rmu_sc0004143.1_g000001 Rmu_sc0019329.1_g000002
rosa_roxburghii Rroxscaffold_7G00193380
rosa_rugosa Rorug06G0091100
rosa_samantha Rh6AG205000 Rh6CG210200 Rh6DG200500
rosa_wichuraiana Rw6G017790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AccB1I GGYRCC 2 cut(s) 8, 751
AccI GTMKAC 1 cut(s) 204
AccII CGCG 5 cut(s) 111, 270, 535, 587, 705
AcoI YGGCCR 2 cut(s) 463, 480
AcyI GRCGYC 4 cut(s) 9, 252, 626, 752
AfiI CCNNNNNNNGG 4 cut(s) 102, 465, 499, 744
AgeI ACCGGT 2 cut(s) 453, 492
AgsI TTSAA 2 cut(s) 151, 829
AhdI GACNNNNNGTC 1 cut(s) 493
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 3 cut(s) 101, 696, 711
AluBI AGCT 7 cut(s) 17, 154, 304, 423, 559, 943, 952
AluI AGCT 7 cut(s) 17, 154, 304, 423, 559, 943, 952
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 535
Ama87I CYCGRG 1 cut(s) 858
AoxI GGCC 9 cut(s) 194, 243, 355, 378, 463, 480, 502, 593, 706
ApeKI GCWGC 7 cut(s) 189, 234, 556, 559, 757, 766, 949
AsiGI ACCGGT 2 cut(s) 453, 492
AspLEI GCGC 8 cut(s) 11, 234, 326, 587, 589, 676, 754, 823
AsuC2I CCSGG 4 cut(s) 335, 479, 859, 860
AsuHPI GGTGA 2 cut(s) 131, 631
AvaI CYCGRG 1 cut(s) 858
AvaII GGWCC 7 cut(s) 337, 456, 700, 715, 735, 802, 979
BanI GGYRCC 2 cut(s) 8, 751
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 1000
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 7 cut(s) 201, 246, 546, 568, 744, 753, 961
BccI CCATC 2 cut(s) 650, 1036
BceAI ACGGC 3 cut(s) 22, 139, 185
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 3 cut(s) 103, 698, 713
BcnI CCSGG 4 cut(s) 335, 479, 859, 860
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 560
BfoI RGCGCY 3 cut(s) 12, 677, 755
BglI GCCNNNNNGGC 1 cut(s) 377
Bme1390I CCNGG 7 cut(s) 103, 335, 479, 698, 713, 859, 860
Bme18I GGWCC 7 cut(s) 337, 456, 700, 715, 735, 802, 979
BmeRI GACNNNNNGTC 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 858
BmgBI CACGTC 1 cut(s) 46
BmiI GGNNCC 6 cut(s) 10, 107, 338, 753, 803, 981
BmrFI CCNGG 7 cut(s) 103, 335, 479, 698, 713, 859, 860
BoxI GACNNNNGTC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 1000
BpmI CTGGAG 1 cut(s) 695
BpuMI CCSGG 4 cut(s) 335, 479, 859, 860
BsaHI GRCGYC 4 cut(s) 9, 252, 626, 752
BsaJI CCNNGG 6 cut(s) 477, 590, 703, 731, 858, 1012
BsaWI WCCGGW 4 cut(s) 339, 453, 492, 804
BsaXI ACNNNNNCTCC 4 cut(s) 56, 77, 86, 107
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 465, 499, 744
Bse118I RCCGGY 2 cut(s) 453, 492
Bse1I ACTGG 2 cut(s) 145, 358
Bse3DI GCAATG 2 cut(s) 265, 408
BseBI CCWGG 3 cut(s) 103, 698, 713
BseDI CCNNGG 6 cut(s) 477, 590, 703, 731, 858, 1012
BseGI GGATG 1 cut(s) 1047
BseLI CCNNNNNNNGG 4 cut(s) 102, 465, 499, 744
BseMI GCAATG 2 cut(s) 265, 408
BseNI ACTGG 2 cut(s) 145, 358
BsePI GCGCGC 1 cut(s) 585
BseRI GAGGAG 9 cut(s) 61, 80, 107, 146, 149, 152, 203, 800, 920
BseXI GCAGC 7 cut(s) 201, 246, 546, 568, 744, 753, 961
BsgI GTGCAG 1 cut(s) 752
Bsh1236I CGCG 5 cut(s) 111, 270, 535, 587, 705
Bsh1285I CGRYCG 3 cut(s) 208, 334, 539
BshFI GGCC 9 cut(s) 196, 245, 357, 380, 465, 482, 504, 595, 708
BshNI GGYRCC 2 cut(s) 8, 751
BshTI ACCGGT 2 cut(s) 453, 492
BsiEI CGRYCG 3 cut(s) 208, 334, 539
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 858
BsiSI CCGG 9 cut(s) 334, 340, 364, 454, 466, 479, 493, 805, 859
BslFI GGGAC 2 cut(s) 350, 815
BslI CCNNNNNNNGG 4 cut(s) 102, 465, 499, 744
BsmAI GTCTC 1 cut(s) 535
BsmBI CGTCTC 1 cut(s) 535
BsmFI GGGAC 2 cut(s) 350, 815
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 9 cut(s) 196, 245, 357, 380, 465, 482, 504, 595, 708
BsoBI CYCGRG 1 cut(s) 858
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 512, 843
Bsp19I CCATGG 1 cut(s) 1012
Bsp68I TCGCGA 1 cut(s) 270
BspANI GGCC 9 cut(s) 196, 245, 357, 380, 465, 482, 504, 595, 708
BspFNI CGCG 5 cut(s) 111, 270, 535, 587, 705
BspLI GGNNCC 6 cut(s) 10, 107, 338, 753, 803, 981
BspMAI CTGCAG 1 cut(s) 564
BspT107I GGYRCC 2 cut(s) 8, 751
BsrDI GCAATG 2 cut(s) 265, 408
BsrFI RCCGGY 2 cut(s) 453, 492
BsrI ACTGG 2 cut(s) 145, 358
BssAI RCCGGY 2 cut(s) 453, 492
BssECI CCNNGG 6 cut(s) 477, 590, 703, 731, 858, 1012
BssHII GCGCGC 1 cut(s) 585
BssMI GATC 2 cut(s) 512, 843
BssNI GRCGYC 4 cut(s) 9, 252, 626, 752
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 1012
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 3 cut(s) 103, 698, 713
Bst4CI ACNGT 1 cut(s) 660
BstACI GRCGYC 4 cut(s) 9, 252, 626, 752
BstC8I GCNNGC 6 cut(s) 194, 198, 369, 564, 587, 624
BstDSI CCRYGG 2 cut(s) 703, 1012
BstF5I GGATG 1 cut(s) 1047
BstFNI CGCG 5 cut(s) 111, 270, 535, 587, 705
BstH2I RGCGCY 3 cut(s) 12, 677, 755
BstHHI GCGC 8 cut(s) 11, 234, 326, 587, 589, 676, 754, 823
BstKTI GATC 2 cut(s) 515, 846
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 2 cut(s) 512, 843
BstMCI CGRYCG 3 cut(s) 208, 334, 539
BstMWI GCNNNNNNNGC 8 cut(s) 132, 289, 377, 680, 702, 763, 766, 949
BstNI CCWGG 3 cut(s) 103, 698, 713
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 7 cut(s) 101, 333, 477, 696, 711, 857, 858
BstSFI CTRYAG 1 cut(s) 560
BstUI CGCG 5 cut(s) 111, 270, 535, 587, 705
BstV1I GCAGC 7 cut(s) 201, 246, 546, 568, 744, 753, 961
BstV2I GAAGAC 1 cut(s) 1000
BstXI CCANNNNNNTGG 1 cut(s) 622
BsuRI GGCC 9 cut(s) 196, 245, 357, 380, 465, 482, 504, 595, 708
BtgI CCRYGG 2 cut(s) 703, 1012
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 1047
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 299
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 6 cut(s) 194, 198, 369, 564, 587, 624
CfoI GCGC 8 cut(s) 11, 234, 326, 587, 589, 676, 754, 823
Cfr10I RCCGGY 2 cut(s) 453, 492
Cfr42I CCGCGG 1 cut(s) 706
Cfr9I CCCGGG 1 cut(s) 858
CseI GACGC 3 cut(s) 226, 517, 615
CspAI ACCGGT 2 cut(s) 453, 492
CviAII CATG 1 cut(s) 1013
DinI GGCGCC 2 cut(s) 10, 753
DpnI GATC 2 cut(s) 514, 845
DpnII GATC 2 cut(s) 512, 843
DriI GACNNNNNGTC 1 cut(s) 493
EaeI YGGCCR 2 cut(s) 463, 480
Eam1105I GACNNNNNGTC 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 1012
Eco47I GGWCC 7 cut(s) 337, 456, 700, 715, 735, 802, 979
Eco88I CYCGRG 1 cut(s) 858
EcoO109I RGGNCCY 3 cut(s) 244, 379, 735
EcoRII CCWGG 3 cut(s) 101, 696, 711
EcoT14I CCWWGG 1 cut(s) 1012
EgeI GGCGCC 2 cut(s) 10, 753
EheI GGCGCC 2 cut(s) 10, 753
ErhI CCWWGG 1 cut(s) 1012
Esp3I CGTCTC 1 cut(s) 535
FaeI CATG 1 cut(s) 1016
FaiI YATR 2 cut(s) 866, 1014
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FaqI GGGAC 2 cut(s) 350, 815
FatI CATG 1 cut(s) 1012
FauI CCCGC 2 cut(s) 205, 792
FblI GTMKAC 1 cut(s) 204
FokI GGATG 1 cut(s) 1054
FspBI CTAG 1 cut(s) 407
GlaI GCGC 8 cut(s) 10, 233, 325, 586, 588, 675, 753, 822
GsuI CTGGAG 1 cut(s) 695
HaeII RGCGCY 3 cut(s) 12, 677, 755
HaeIII GGCC 9 cut(s) 196, 245, 357, 380, 465, 482, 504, 595, 708
HapII CCGG 9 cut(s) 334, 340, 364, 454, 466, 479, 493, 805, 859
HgaI GACGC 3 cut(s) 226, 517, 615
HhaI GCGC 8 cut(s) 11, 234, 326, 587, 589, 676, 754, 823
Hin1I GRCGYC 4 cut(s) 9, 252, 626, 752
Hin1II CATG 1 cut(s) 1016
Hin6I GCGC 8 cut(s) 9, 232, 324, 585, 587, 674, 752, 821
HinP1I GCGC 8 cut(s) 9, 232, 324, 585, 587, 674, 752, 821
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 8 cut(s) 265, 343, 688, 727, 788, 835, 881, 1046
HpaII CCGG 9 cut(s) 334, 340, 364, 454, 466, 479, 493, 805, 859
HphI GGTGA 2 cut(s) 131, 631
Hpy166II GTNNAC 3 cut(s) 205, 639, 718
Hpy188I TCNGA 4 cut(s) 220, 512, 732, 843
Hpy188III TCNNGA 9 cut(s) 20, 37, 269, 329, 724, 826, 847, 938, 986
Hpy8I GTNNAC 3 cut(s) 205, 639, 718
Hpy99I CGWCG 6 cut(s) 50, 125, 206, 254, 275, 631
HpyAV CCTTC 6 cut(s) 43, 347, 370, 748, 823, 908
HpyCH4III ACNGT 1 cut(s) 660
HpyCH4IV ACGT 3 cut(s) 45, 183, 252
HpyCH4V TGCA 4 cut(s) 258, 401, 562, 769
HpyF10VI GCNNNNNNNGC 8 cut(s) 132, 289, 377, 680, 702, 763, 766, 949
HpySE526I ACGT 3 cut(s) 45, 183, 252
Hsp92I GRCGYC 4 cut(s) 9, 252, 626, 752
Hsp92II CATG 1 cut(s) 1016
HspAI GCGC 8 cut(s) 9, 232, 324, 585, 587, 674, 752, 821
KasI GGCGCC 2 cut(s) 8, 751
KspI CCGCGG 1 cut(s) 706
Kzo9I GATC 2 cut(s) 512, 843
LmnI GCTCC 7 cut(s) 111, 159, 428, 468, 525, 940, 1026
Lsp1109I GCAGC 7 cut(s) 201, 246, 546, 568, 744, 753, 961
MaeI CTAG 1 cut(s) 407
MaeII ACGT 3 cut(s) 45, 183, 252
MalI GATC 2 cut(s) 514, 845
MboI GATC 2 cut(s) 512, 843
MboII GAAGA 1 cut(s) 1000
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 3 cut(s) 646, 872, 1017
Mly113I GGCGCC 2 cut(s) 9, 752
MlyI GAGTC 3 cut(s) 337, 797, 1040
MmeI TCCRAC 3 cut(s) 85, 204, 450
MspA1I CMGCKG 3 cut(s) 559, 705, 757
MspI CCGG 9 cut(s) 334, 340, 364, 454, 466, 479, 493, 805, 859
MspR9I CCNGG 7 cut(s) 103, 335, 479, 698, 713, 859, 860
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 3 cut(s) 103, 698, 713
MvnI CGCG 5 cut(s) 111, 270, 535, 587, 705
MwoI GCNNNNNNNGC 8 cut(s) 132, 289, 377, 680, 702, 763, 766, 949
NarI GGCGCC 2 cut(s) 9, 752
NciI CCSGG 4 cut(s) 335, 479, 859, 860
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 2 cut(s) 512, 843
NlaIII CATG 1 cut(s) 1016
NlaIV GGNNCC 6 cut(s) 10, 107, 338, 753, 803, 981
NmeAIII GCCGAG 2 cut(s) 327, 615
NruI TCGCGA 1 cut(s) 270
PauI GCGCGC 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 5 cut(s) 265, 688, 727, 835, 881
PinAI ACCGGT 2 cut(s) 453, 492
PleI GAGTC 3 cut(s) 337, 796, 1040
PluTI GGCGCC 2 cut(s) 12, 755
PpsI GAGTC 3 cut(s) 337, 796, 1040
PpuMI RGGWCCY 1 cut(s) 735
PshAI GACNNNNGTC 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 735
Psp6I CCWGG 3 cut(s) 101, 696, 711
PspGI CCWGG 3 cut(s) 101, 696, 711
PspN4I GGNNCC 6 cut(s) 10, 107, 338, 753, 803, 981
PspPPI RGGWCCY 1 cut(s) 735
PstI CTGCAG 1 cut(s) 564
PteI GCGCGC 1 cut(s) 585
PvuII CAGCTG 1 cut(s) 559
RruI TCGCGA 1 cut(s) 270
SacII CCGCGG 1 cut(s) 706
SalI GTCGAC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 512, 843
SchI GAGTC 3 cut(s) 337, 797, 1040
ScrFI CCNGG 7 cut(s) 103, 335, 479, 698, 713, 859, 860
SduI GDGCHC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 560
SfoI GGCGCC 2 cut(s) 10, 753
Sfr303I CCGCGG 1 cut(s) 706
SgrBI CCGCGG 1 cut(s) 706
SinI GGWCC 7 cut(s) 337, 456, 700, 715, 735, 802, 979
SmaI CCCGGG 1 cut(s) 860
Sse9I AATT 3 cut(s) 646, 872, 1017
SspDI GGCGCC 2 cut(s) 8, 751
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 7 cut(s) 101, 333, 477, 696, 711, 857, 858
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 1 cut(s) 660
TaiI ACGT 3 cut(s) 48, 186, 255
TaqI TCGA 9 cut(s) 21, 27, 120, 204, 228, 249, 330, 791, 846
TasI AATT 3 cut(s) 646, 872, 1017
TauI GCSGC 6 cut(s) 551, 686, 708, 752, 757, 799
TfiI GAWTC 5 cut(s) 265, 688, 727, 835, 881
TscAI CASTG 1 cut(s) 299
TseI GCWGC 7 cut(s) 189, 234, 556, 559, 757, 766, 949
TspDTI ATGAA 2 cut(s) 615, 827
TspGWI ACGGA 2 cut(s) 681, 885
TspMI CCCGGG 1 cut(s) 858
TspRI CASTG 1 cut(s) 299
VpaK11BI GGWCC 7 cut(s) 337, 456, 700, 715, 735, 802, 979
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmaI CCCGGG 1 cut(s) 858
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 1 cut(s) 407
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.