Rw6G017790

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010852
Physical Location & Seq
Reverse (-)
35164350 .. 35165539
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017790.1

Sequence Viewer

Length: 1128 bp
ATGCCCGCGACGGAATTCCAAAGGTCGTCGGCAGCTGGGTTCAACCAATTCGGGCGCTCCTCCGTCTTCAGCCTCAGACGCCGCCCCCACCACCACCACCACCACAACCTCGTCAATCCAGTCATGGACGGCGCCAAAGCTCTCGACCTCGACACCTTCCTGACCCACGTCGCCGATTGCTTCCAACACCTCTCCTCCCCCTCCCAAGACCTCCTCTCCCTCTCCTGGCTCCGCGACCTCCTCGACGGCTTCCTCCGCATTCACCACCAGTTCAAGCTCCTCCTCCTCTCCACCCCAAAATCCAACGTCAGCAGGCCCGCCGTCGACCGCCTCCTCTCCGATTACTTCGAGCGCAGCGTCAAGGCCCTCGACGTCTGCAATGCGATTCGCGACGGGATTGAGCAGATGAGGCAGTGGCAGAAGCTGTTGGAGATTGTGCTCTGCGCTCTCGACCGGGACCGGACTCTCGGCGAAGGCCAGTTCCGGCGAGCCAAGAAGGCCCTGATAGATTTGGCTATTGCAATGCTAGACGACAAGGACAGCTCCAACAACACCACCCTCGCCCACCGCAACCGGTCCTTTGGCCGGAGCAACGCCCCGGCCAAAGACTACCGGTCGATGGGCCACTTCCGATCTCTGTCGTGGAGCGTCTCGCGGTCGTGTCGGGCGACCAATGGGCTGGCGTCGGCTGTGTTCACCATCAATTCTGTTCTACTGTTCGTAATGTGGGCGCTGGTGGCGGCGATTCCGTGCCAGGACCGCGGCCTCCAGGTCCACTTCACGATTCCGAGGACCTTCGGGTGGGCGGCGCCGCTGCTTTCGCTGCACGAGAGGATAATGGAGGAGTCGAAGCGGCGGGACCGGAGGAACGCCTGCGCGCTTTTGAAGGAGATTCATCAGATCGAGAAATGTTCCCGGGTCATAAGCGAATTGGCTGATTCGGTTCAGTTTCCGTTGAGTGAGGAGAAAGAAGGGGAGGTCAGGCAGAGAGTTCAGGAGCTTTCGCAGCTCTGCGAGGGGATAAAGGAGGGGTTGGACCCTCTGGAAAGACAGGTCAGGGAGGTCTTCCATGGAATTGTGCGGAGCAGAACAGAGGGGATGGACTCTTTGGGAAAGACCAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

375

Amino Acids

42.67

Weight (kDa)

9.05

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 11 - 370 1.7e-125 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18740 AT1G74450
fragaria_vesca FvH4_2g13680 FvH4_2g13680
malus_domestica MD05G1026700.v1.1 MD10G1025900.v1.1
prunus_persica Prupe.8G031200_v2.0.a1
pyrus_communis pycom05g01850 pycom10g01740
rosa_chinensis RchiOBHm_Chr6g0275361
rosa_laevigata RLG00000013471
rosa_multiflora Rmu_co8417379.1_g000001 Rmu_sc0004143.1_g000001 Rmu_sc0019329.1_g000002
rosa_roxburghii Rroxscaffold_7G00193380
rosa_rugosa Rorug06G0091100
rosa_samantha Rh6AG205000 Rh6CG210200 Rh6DG200500
rosa_wichuraiana Rw6G017790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
AccB1I GGYRCC 2 cut(s) 131, 808
AccI GTMKAC 1 cut(s) 324
AccII CGCG 6 cut(s) 8, 234, 390, 655, 762, 878
AcoI YGGCCR 2 cut(s) 583, 600
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 52
AcyI GRCGYC 5 cut(s) 79, 132, 372, 683, 809
AfiI CCNNNNNNNGG 4 cut(s) 225, 585, 619, 801
AgeI ACCGGT 2 cut(s) 573, 612
AgsI TTSAA 3 cut(s) 43, 274, 886
AhdI GACNNNNNGTC 1 cut(s) 613
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 3 cut(s) 224, 753, 768
AluBI AGCT 7 cut(s) 35, 140, 277, 424, 543, 1000, 1009
AluI AGCT 7 cut(s) 35, 140, 277, 424, 543, 1000, 1009
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 655
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 915
AoxI GGCC 8 cut(s) 314, 363, 475, 498, 583, 600, 622, 763
ApeKI GCWGC 5 cut(s) 32, 354, 814, 823, 1006
ApoI RAATTY 1 cut(s) 14
AsiGI ACCGGT 2 cut(s) 573, 612
AspLEI GCGC 8 cut(s) 57, 134, 354, 446, 733, 811, 878, 880
AsuC2I CCSGG 4 cut(s) 455, 599, 916, 917
AsuHPI GGTGA 2 cut(s) 254, 688
AvaI CYCGRG 1 cut(s) 915
AvaII GGWCC 7 cut(s) 457, 576, 757, 772, 792, 859, 1036
BanI GGYRCC 2 cut(s) 131, 808
BauI CACGAG 1 cut(s) 827
BbsI GAAGAC 2 cut(s) 58, 1057
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 44, 366, 801, 810, 1018
BccI CCATC 3 cut(s) 613, 707, 1093
BceAI ACGGC 3 cut(s) 145, 262, 305
BciT130I CCWGG 3 cut(s) 226, 755, 770
BcnI CCSGG 4 cut(s) 455, 599, 916, 917
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 527
BfoI RGCGCY 4 cut(s) 58, 135, 734, 812
BglI GCCNNNNNGGC 1 cut(s) 497
Bme1390I CCNGG 7 cut(s) 226, 455, 599, 755, 770, 916, 917
Bme18I GGWCC 7 cut(s) 457, 576, 757, 772, 792, 859, 1036
BmeRI GACNNNNNGTC 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 915
BmgBI CACGTC 1 cut(s) 169
BmiI GGNNCC 6 cut(s) 133, 230, 458, 810, 860, 1038
BmrFI CCNGG 7 cut(s) 226, 455, 599, 755, 770, 916, 917
BoxI GACNNNNGTC 1 cut(s) 167
BpiI GAAGAC 2 cut(s) 58, 1057
BpmI CTGGAG 1 cut(s) 752
BpuMI CCSGG 4 cut(s) 455, 599, 916, 917
BsaHI GRCGYC 5 cut(s) 79, 132, 372, 683, 809
BsaJI CCNNGG 5 cut(s) 597, 760, 788, 915, 1069
BsaWI WCCGGW 4 cut(s) 459, 573, 612, 861
BsaXI ACNNNNNCTCC 4 cut(s) 179, 200, 209, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 585, 619, 801
Bse118I RCCGGY 2 cut(s) 573, 612
Bse1I ACTGG 3 cut(s) 119, 268, 478
Bse3DI GCAATG 2 cut(s) 385, 528
BseBI CCWGG 3 cut(s) 226, 755, 770
BseDI CCNNGG 5 cut(s) 597, 760, 788, 915, 1069
BseGI GGATG 1 cut(s) 1104
BseLI CCNNNNNNNGG 4 cut(s) 225, 585, 619, 801
BseMI GCAATG 2 cut(s) 385, 528
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 119, 268, 478
BsePI GCGCGC 1 cut(s) 876
BseXI GCAGC 5 cut(s) 44, 366, 801, 810, 1018
BseYI CCCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 809
Bsh1236I CGCG 6 cut(s) 8, 234, 390, 655, 762, 878
Bsh1285I CGRYCG 4 cut(s) 328, 454, 617, 659
BshFI GGCC 8 cut(s) 316, 365, 477, 500, 585, 602, 624, 765
BshNI GGYRCC 2 cut(s) 131, 808
BshTI ACCGGT 2 cut(s) 573, 612
BsiEI CGRYCG 4 cut(s) 328, 454, 617, 659
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 915
BsiSI CCGG 9 cut(s) 454, 460, 484, 574, 586, 599, 613, 862, 916
BslFI GGGAC 2 cut(s) 470, 872
BslI CCNNNNNNNGG 4 cut(s) 225, 585, 619, 801
BsmAI GTCTC 1 cut(s) 655
BsmBI CGTCTC 1 cut(s) 655
BsmFI GGGAC 2 cut(s) 470, 872
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 8 cut(s) 316, 365, 477, 500, 585, 602, 624, 765
BsoBI CYCGRG 1 cut(s) 915
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 632, 900
Bsp19I CCATGG 1 cut(s) 1069
Bsp68I TCGCGA 1 cut(s) 390
BspANI GGCC 8 cut(s) 316, 365, 477, 500, 585, 602, 624, 765
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 6 cut(s) 8, 234, 390, 655, 762, 878
BspLI GGNNCC 6 cut(s) 133, 230, 458, 810, 860, 1038
BspT107I GGYRCC 2 cut(s) 131, 808
BsrDI GCAATG 2 cut(s) 385, 528
BsrFI RCCGGY 2 cut(s) 573, 612
BsrI ACTGG 3 cut(s) 119, 268, 478
BssAI RCCGGY 2 cut(s) 573, 612
BssECI CCNNGG 5 cut(s) 597, 760, 788, 915, 1069
BssHII GCGCGC 1 cut(s) 876
BssMI GATC 2 cut(s) 632, 900
BssNI GRCGYC 5 cut(s) 79, 132, 372, 683, 809
BssSI CACGAG 1 cut(s) 827
BssT1I CCWWGG 1 cut(s) 1069
Bst2BI CACGAG 1 cut(s) 827
Bst2UI CCWGG 3 cut(s) 226, 755, 770
Bst4CI ACNGT 1 cut(s) 717
BstACI GRCGYC 5 cut(s) 79, 132, 372, 683, 809
BstC8I GCNNGC 7 cut(s) 6, 314, 318, 489, 681, 874, 878
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 2 cut(s) 760, 1069
BstF5I GGATG 1 cut(s) 1104
BstFNI CGCG 6 cut(s) 8, 234, 390, 655, 762, 878
BstH2I RGCGCY 4 cut(s) 58, 135, 734, 812
BstHHI GCGC 8 cut(s) 57, 134, 354, 446, 733, 811, 878, 880
BstKTI GATC 2 cut(s) 635, 903
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 2 cut(s) 632, 900
BstMCI CGRYCG 4 cut(s) 328, 454, 617, 659
BstMWI GCNNNNNNNGC 9 cut(s) 78, 255, 409, 497, 737, 759, 820, 823, 1006
BstNI CCWGG 3 cut(s) 226, 755, 770
BstPAI GACNNNNGTC 1 cut(s) 167
BstSCI CCNGG 7 cut(s) 224, 453, 597, 753, 768, 914, 915
BstUI CGCG 6 cut(s) 8, 234, 390, 655, 762, 878
BstV1I GCAGC 5 cut(s) 44, 366, 801, 810, 1018
BstV2I GAAGAC 2 cut(s) 58, 1057
BstXI CCANNNNNNTGG 1 cut(s) 679
BsuRI GGCC 8 cut(s) 316, 365, 477, 500, 585, 602, 624, 765
BtgI CCRYGG 2 cut(s) 760, 1069
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 1104
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 419
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 7 cut(s) 6, 314, 318, 489, 681, 874, 878
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 8 cut(s) 57, 134, 354, 446, 733, 811, 878, 880
Cfr10I RCCGGY 2 cut(s) 573, 612
Cfr42I CCGCGG 1 cut(s) 763
Cfr9I CCCGGG 1 cut(s) 915
CseI GACGC 4 cut(s) 87, 346, 637, 672
CspAI ACCGGT 2 cut(s) 573, 612
CviAII CATG 2 cut(s) 124, 1070
DdeI CTNAG 1 cut(s) 74
DinI GGCGCC 2 cut(s) 133, 810
DpnI GATC 2 cut(s) 634, 902
DpnII GATC 2 cut(s) 632, 900
DriI GACNNNNNGTC 1 cut(s) 613
EaeI YGGCCR 2 cut(s) 583, 600
Eam1105I GACNNNNNGTC 1 cut(s) 613
Eco130I CCWWGG 1 cut(s) 1069
Eco47I GGWCC 7 cut(s) 457, 576, 757, 772, 792, 859, 1036
Eco57I CTGAAG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 915
EcoO109I RGGNCCY 3 cut(s) 364, 499, 792
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 3 cut(s) 224, 753, 768
EcoT14I CCWWGG 1 cut(s) 1069
EgeI GGCGCC 2 cut(s) 133, 810
EheI GGCGCC 2 cut(s) 133, 810
ErhI CCWWGG 1 cut(s) 1069
Esp3I CGTCTC 1 cut(s) 655
FaeI CATG 2 cut(s) 127, 1073
FaiI YATR 3 cut(s) 125, 923, 1071
FaqI GGGAC 2 cut(s) 470, 872
FatI CATG 2 cut(s) 123, 1069
FauI CCCGC 3 cut(s) 13, 325, 849
FblI GTMKAC 1 cut(s) 324
FokI GGATG 1 cut(s) 1111
FspBI CTAG 1 cut(s) 527
GlaI GCGC 8 cut(s) 56, 133, 353, 445, 732, 810, 877, 879
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 752
HaeII RGCGCY 4 cut(s) 58, 135, 734, 812
HaeIII GGCC 8 cut(s) 316, 365, 477, 500, 585, 602, 624, 765
HapII CCGG 9 cut(s) 454, 460, 484, 574, 586, 599, 613, 862, 916
HgaI GACGC 4 cut(s) 87, 346, 637, 672
HhaI GCGC 8 cut(s) 57, 134, 354, 446, 733, 811, 878, 880
Hin1I GRCGYC 5 cut(s) 79, 132, 372, 683, 809
Hin1II CATG 2 cut(s) 127, 1073
Hin6I GCGC 8 cut(s) 55, 132, 352, 444, 731, 809, 876, 878
HinP1I GCGC 8 cut(s) 55, 132, 352, 444, 731, 809, 876, 878
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 8 cut(s) 385, 463, 745, 784, 845, 892, 938, 1103
HpaII CCGG 9 cut(s) 454, 460, 484, 574, 586, 599, 613, 862, 916
HphI GGTGA 2 cut(s) 254, 688
Hpy166II GTNNAC 3 cut(s) 325, 696, 775
Hpy188I TCNGA 5 cut(s) 77, 340, 632, 789, 900
Hpy188III TCNNGA 8 cut(s) 143, 160, 389, 449, 781, 904, 995, 1043
Hpy8I GTNNAC 3 cut(s) 325, 696, 775
Hpy99I CGWCG 8 cut(s) 13, 31, 173, 248, 326, 374, 395, 688
HpyAV CCTTC 6 cut(s) 166, 467, 490, 805, 880, 965
HpyCH4III ACNGT 1 cut(s) 717
HpyCH4IV ACGT 3 cut(s) 168, 306, 372
HpyCH4V TGCA 3 cut(s) 378, 521, 826
HpyF10VI GCNNNNNNNGC 9 cut(s) 78, 255, 409, 497, 737, 759, 820, 823, 1006
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 3 cut(s) 168, 306, 372
Hsp92I GRCGYC 5 cut(s) 79, 132, 372, 683, 809
Hsp92II CATG 2 cut(s) 127, 1073
HspAI GCGC 8 cut(s) 55, 132, 352, 444, 731, 809, 876, 878
KasI GGCGCC 2 cut(s) 131, 808
KspI CCGCGG 1 cut(s) 763
Kzo9I GATC 2 cut(s) 632, 900
LmnI GCTCC 8 cut(s) 62, 234, 282, 548, 588, 645, 997, 1083
Lsp1109I GCAGC 5 cut(s) 44, 366, 801, 810, 1018
MaeI CTAG 1 cut(s) 527
MaeII ACGT 3 cut(s) 168, 306, 372
MalI GATC 2 cut(s) 634, 902
MboI GATC 2 cut(s) 632, 900
MboII GAAGA 2 cut(s) 58, 1057
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 5 cut(s) 14, 47, 703, 929, 1074
Mly113I GGCGCC 2 cut(s) 132, 809
MlyI GAGTC 3 cut(s) 457, 854, 1097
MmeI TCCRAC 5 cut(s) 208, 327, 408, 570, 1014
MspA1I CMGCKG 3 cut(s) 35, 762, 814
MspI CCGG 9 cut(s) 454, 460, 484, 574, 586, 599, 613, 862, 916
MspR9I CCNGG 7 cut(s) 226, 455, 599, 755, 770, 916, 917
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 3 cut(s) 226, 755, 770
MvnI CGCG 6 cut(s) 8, 234, 390, 655, 762, 878
MwoI GCNNNNNNNGC 9 cut(s) 78, 255, 409, 497, 737, 759, 820, 823, 1006
NarI GGCGCC 2 cut(s) 132, 809
NciI CCSGG 4 cut(s) 455, 599, 916, 917
NcoI CCATGG 1 cut(s) 1069
NdeII GATC 2 cut(s) 632, 900
NlaIII CATG 2 cut(s) 127, 1073
NlaIV GGNNCC 6 cut(s) 133, 230, 458, 810, 860, 1038
NmeAIII GCCGAG 1 cut(s) 447
NruI TCGCGA 1 cut(s) 390
PauI GCGCGC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 665
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 5 cut(s) 385, 745, 784, 892, 938
PinAI ACCGGT 2 cut(s) 573, 612
PleI GAGTC 3 cut(s) 457, 853, 1097
PluTI GGCGCC 2 cut(s) 135, 812
PpsI GAGTC 3 cut(s) 457, 853, 1097
PpuMI RGGWCCY 1 cut(s) 792
PshAI GACNNNNGTC 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 792
Psp6I CCWGG 3 cut(s) 224, 753, 768
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 3 cut(s) 224, 753, 768
PspN4I GGNNCC 6 cut(s) 133, 230, 458, 810, 860, 1038
PspPPI RGGWCCY 1 cut(s) 792
PstNI CAGNNNCTG 1 cut(s) 424
PteI GCGCGC 1 cut(s) 876
PvuII CAGCTG 1 cut(s) 35
RruI TCGCGA 1 cut(s) 390
SacII CCGCGG 1 cut(s) 763
SalI GTCGAC 1 cut(s) 323
Sau3AI GATC 2 cut(s) 632, 900
SchI GAGTC 3 cut(s) 457, 854, 1097
ScrFI CCNGG 7 cut(s) 226, 455, 599, 755, 770, 916, 917
SduI GDGCHC 1 cut(s) 441
SfoI GGCGCC 2 cut(s) 133, 810
Sfr303I CCGCGG 1 cut(s) 763
SgrBI CCGCGG 1 cut(s) 763
SinI GGWCC 7 cut(s) 457, 576, 757, 772, 792, 859, 1036
SmaI CCCGGG 1 cut(s) 917
Sse9I AATT 5 cut(s) 14, 47, 703, 929, 1074
SspDI GGCGCC 2 cut(s) 131, 808
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 7 cut(s) 224, 453, 597, 753, 768, 914, 915
StyI CCWWGG 1 cut(s) 1069
TaaI ACNGT 1 cut(s) 717
TaiI ACGT 3 cut(s) 171, 309, 375
TasI AATT 5 cut(s) 14, 47, 703, 929, 1074
TauI GCSGC 6 cut(s) 84, 743, 765, 809, 814, 856
TfiI GAWTC 5 cut(s) 385, 745, 784, 892, 938
TscAI CASTG 1 cut(s) 419
TseI GCWGC 5 cut(s) 32, 354, 814, 823, 1006
TspDTI ATGAA 1 cut(s) 884
TspGWI ACGGA 4 cut(s) 26, 52, 738, 942
TspMI CCCGGG 1 cut(s) 915
TspRI CASTG 1 cut(s) 419
VpaK11BI GGWCC 7 cut(s) 457, 576, 757, 772, 792, 859, 1036
XapI RAATTY 1 cut(s) 14
XmaI CCCGGG 1 cut(s) 915
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 527
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.