Rh6CG210200

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010852
Physical Location & Seq
Reverse (-)
34862008 .. 34866130
4123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG210200.1

Sequence Viewer

Length: 1191 bp
ATGCCCGCGACGGAATTCCAAAGGTCGTCGGCAGCTGGGTTCAACCAATTCGGGCGCTCCTCCGTCTTCAGCCTCAGACGCCGCCCCCACCACCACCACCACAACCTCGTCAATCCAGTCATGGACGGCGCCAAAGCTCTCGACCTCGACACCTTCCAGACCCACGTCGCCGATTGCTTCCAACACCTCTCCTCCCCCTCCCAAGACCTCCTCTCCCTCTCCTGGCTCCGCGACCTCCTCGACGGCTTCCTCCGCATTCACCACCAGTTCAAGCTCCTCCTCCTCTCCACCCCAAAATCCAACGTCAGCAGGCCCGCCGTCGACCGCCTCCTCTCCGATTACTTCGAGCGCAGCGTCAAGGCCCTCGACGTCTGCAATGCGATTCGCGACGGGATTGAGCAGATGAGGCAGTGGCAGAAGCTGTTGGAGATTGTGCTCTGCGCTCTCGACCGGGACCGGACTCTCGGCGAAGGCCAGTTCCGGCGAGCCAAGAAGGCCCTGATAGATTTGGCTATTGCAATGCTAGACGACAAGGACAGCAGCTCCAACAACACCACCCTCGCCCACCGCAACCGGTCCTTTGGCCGGAGCAACGCCCCGGCCAAAGACTACCGGTCGATGGGCCACTTCCGATCTCTGTCGTGGAGCGTCTCGCGGTCGTGGTCGGCGGCGAGGCAGCTACAGGCGATTGGGAACAACCTCTGCGCGCCGAGGCCCAATGAAGTCGTGGCGACCAATGGGCTGGCGTCGGCTGTGTTCACCATCAATTCTGTTCTACTGTTCGTAATGTGGGCGCTGGTGGCGGCGATTCCGTGCCAGGACCGCGGCCTCCAGGTCCACTTCACGATTCCGAGGACCTTCGGGTGGGCGGCGCCGCTGCTTTCGCTGCACGAGAGGATAATGGAGGAGTCGAAGCGGCGGGACCGGAGGAACGCCTGTGCGCTCTTGAAGGAGATTCATCAGATCGAGAAATGTTCCCGGGTCATAAGCGAATTGGCTGATTCGGTTCAGTTTCCGTTGAGTGAGGAGAAAGAAGGGGAGGTCAGGCAGAGAGTTCAGGAGCTTTCGCAGCTCTGCGAGGGGATAAAGGAGGGCTTGGACCCTCTGGAAAGACAGGTCAGGGAGGTCTTCCATGGAATTGTGCGGAGCAGAACAGAAGGGATGGACTCTTTGGGAAAGACCAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

396

Amino Acids

44.87

Weight (kDa)

9.05

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 12 - 391 1.6e-147 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18740 AT1G74450
fragaria_vesca FvH4_2g13680 FvH4_2g13680
malus_domestica MD05G1026700.v1.1 MD10G1025900.v1.1
prunus_persica Prupe.8G031200_v2.0.a1
pyrus_communis pycom05g01850 pycom10g01740
rosa_chinensis RchiOBHm_Chr6g0275361
rosa_laevigata RLG00000013471
rosa_multiflora Rmu_co8417379.1_g000001 Rmu_sc0004143.1_g000001 Rmu_sc0019329.1_g000002
rosa_roxburghii Rroxscaffold_7G00193380
rosa_rugosa Rorug06G0091100
rosa_samantha Rh6AG205000 Rh6CG210200 Rh6DG200500
rosa_wichuraiana Rw6G017790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 372
AccB1I GGYRCC 2 cut(s) 128, 871
AccI GTMKAC 1 cut(s) 321
AccII CGCG 6 cut(s) 8, 231, 387, 655, 707, 825
AcoI YGGCCR 2 cut(s) 583, 600
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 52
AcyI GRCGYC 5 cut(s) 79, 129, 369, 746, 872
AfiI CCNNNNNNNGG 4 cut(s) 222, 585, 619, 864
AgeI ACCGGT 2 cut(s) 573, 612
AgsI TTSAA 3 cut(s) 43, 271, 949
AhdI GACNNNNNGTC 1 cut(s) 613
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 3 cut(s) 221, 816, 831
AluBI AGCT 8 cut(s) 35, 137, 274, 421, 543, 679, 1063, 1072
AluI AGCT 8 cut(s) 35, 137, 274, 421, 543, 679, 1063, 1072
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 655
AlwNI CAGNNNCTG 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 978
AoxI GGCC 9 cut(s) 311, 360, 472, 495, 583, 600, 622, 713, 826
ApeKI GCWGC 7 cut(s) 32, 351, 540, 676, 877, 886, 1069
ApoI RAATTY 1 cut(s) 14
AsiGI ACCGGT 2 cut(s) 573, 612
AspLEI GCGC 9 cut(s) 57, 131, 351, 443, 707, 709, 796, 874, 943
AsuC2I CCSGG 4 cut(s) 452, 599, 979, 980
AsuHPI GGTGA 2 cut(s) 251, 751
AvaI CYCGRG 1 cut(s) 978
AvaII GGWCC 7 cut(s) 454, 576, 820, 835, 855, 922, 1099
BanI GGYRCC 2 cut(s) 128, 871
BauI CACGAG 1 cut(s) 890
BbsI GAAGAC 2 cut(s) 58, 1120
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 7 cut(s) 44, 363, 552, 688, 864, 873, 1081
BccI CCATC 3 cut(s) 613, 770, 1156
BceAI ACGGC 3 cut(s) 142, 259, 302
BciT130I CCWGG 3 cut(s) 223, 818, 833
BcnI CCSGG 4 cut(s) 452, 599, 979, 980
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 680
BfoI RGCGCY 4 cut(s) 58, 132, 797, 875
BglI GCCNNNNNGGC 1 cut(s) 494
Bme1390I CCNGG 7 cut(s) 223, 452, 599, 818, 833, 979, 980
Bme18I GGWCC 7 cut(s) 454, 576, 820, 835, 855, 922, 1099
BmeRI GACNNNNNGTC 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 978
BmgBI CACGTC 1 cut(s) 166
BmiI GGNNCC 6 cut(s) 130, 227, 455, 873, 923, 1101
BmrFI CCNGG 7 cut(s) 223, 452, 599, 818, 833, 979, 980
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 58, 1120
BpmI CTGGAG 1 cut(s) 815
BpuMI CCSGG 4 cut(s) 452, 599, 979, 980
BsaHI GRCGYC 5 cut(s) 79, 129, 369, 746, 872
BsaJI CCNNGG 6 cut(s) 597, 710, 823, 851, 978, 1132
BsaWI WCCGGW 4 cut(s) 456, 573, 612, 924
BsaXI ACNNNNNCTCC 6 cut(s) 176, 197, 206, 227, 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 585, 619, 864
Bse118I RCCGGY 2 cut(s) 573, 612
Bse1I ACTGG 3 cut(s) 116, 265, 475
Bse3DI GCAATG 2 cut(s) 382, 525
BseBI CCWGG 3 cut(s) 223, 818, 833
BseDI CCNNGG 6 cut(s) 597, 710, 823, 851, 978, 1132
BseGI GGATG 1 cut(s) 1167
BseLI CCNNNNNNNGG 4 cut(s) 222, 585, 619, 864
BseMI GCAATG 2 cut(s) 382, 525
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 116, 265, 475
BsePI GCGCGC 1 cut(s) 705
BseXI GCAGC 7 cut(s) 44, 363, 552, 688, 864, 873, 1081
BseYI CCCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 872
Bsh1236I CGCG 6 cut(s) 8, 231, 387, 655, 707, 825
Bsh1285I CGRYCG 4 cut(s) 325, 451, 617, 659
BshFI GGCC 9 cut(s) 313, 362, 474, 497, 585, 602, 624, 715, 828
BshNI GGYRCC 2 cut(s) 128, 871
BshTI ACCGGT 2 cut(s) 573, 612
BsiEI CGRYCG 4 cut(s) 325, 451, 617, 659
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 978
BsiSI CCGG 9 cut(s) 451, 457, 481, 574, 586, 599, 613, 925, 979
BslFI GGGAC 2 cut(s) 467, 935
BslI CCNNNNNNNGG 4 cut(s) 222, 585, 619, 864
BsmAI GTCTC 1 cut(s) 655
BsmBI CGTCTC 1 cut(s) 655
BsmFI GGGAC 2 cut(s) 467, 935
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 9 cut(s) 313, 362, 474, 497, 585, 602, 624, 715, 828
BsoBI CYCGRG 1 cut(s) 978
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 2 cut(s) 632, 963
Bsp19I CCATGG 1 cut(s) 1132
Bsp68I TCGCGA 1 cut(s) 387
BspANI GGCC 9 cut(s) 313, 362, 474, 497, 585, 602, 624, 715, 828
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 6 cut(s) 8, 231, 387, 655, 707, 825
BspLI GGNNCC 6 cut(s) 130, 227, 455, 873, 923, 1101
BspT107I GGYRCC 2 cut(s) 128, 871
BsrDI GCAATG 2 cut(s) 382, 525
BsrFI RCCGGY 2 cut(s) 573, 612
BsrI ACTGG 3 cut(s) 116, 265, 475
BssAI RCCGGY 2 cut(s) 573, 612
BssECI CCNNGG 6 cut(s) 597, 710, 823, 851, 978, 1132
BssHII GCGCGC 1 cut(s) 705
BssMI GATC 2 cut(s) 632, 963
BssNI GRCGYC 5 cut(s) 79, 129, 369, 746, 872
BssSI CACGAG 1 cut(s) 890
BssT1I CCWWGG 1 cut(s) 1132
Bst2BI CACGAG 1 cut(s) 890
Bst2UI CCWGG 3 cut(s) 223, 818, 833
Bst4CI ACNGT 1 cut(s) 780
BstACI GRCGYC 5 cut(s) 79, 129, 369, 746, 872
BstC8I GCNNGC 6 cut(s) 6, 311, 315, 486, 707, 744
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 2 cut(s) 823, 1132
BstF5I GGATG 1 cut(s) 1167
BstFNI CGCG 6 cut(s) 8, 231, 387, 655, 707, 825
BstH2I RGCGCY 4 cut(s) 58, 132, 797, 875
BstHHI GCGC 9 cut(s) 57, 131, 351, 443, 707, 709, 796, 874, 943
BstKTI GATC 2 cut(s) 635, 966
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 2 cut(s) 632, 963
BstMCI CGRYCG 4 cut(s) 325, 451, 617, 659
BstMWI GCNNNNNNNGC 9 cut(s) 78, 252, 406, 494, 800, 822, 883, 886, 1069
BstNI CCWGG 3 cut(s) 223, 818, 833
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 7 cut(s) 221, 450, 597, 816, 831, 977, 978
BstSFI CTRYAG 1 cut(s) 680
BstUI CGCG 6 cut(s) 8, 231, 387, 655, 707, 825
BstV1I GCAGC 7 cut(s) 44, 363, 552, 688, 864, 873, 1081
BstV2I GAAGAC 2 cut(s) 58, 1120
BstXI CCANNNNNNTGG 1 cut(s) 742
BsuRI GGCC 9 cut(s) 313, 362, 474, 497, 585, 602, 624, 715, 828
BtgI CCRYGG 2 cut(s) 823, 1132
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 1167
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 416
BtuMI TCGCGA 1 cut(s) 387
Cac8I GCNNGC 6 cut(s) 6, 311, 315, 486, 707, 744
CaiI CAGNNNCTG 1 cut(s) 421
CfoI GCGC 9 cut(s) 57, 131, 351, 443, 707, 709, 796, 874, 943
Cfr10I RCCGGY 2 cut(s) 573, 612
Cfr42I CCGCGG 1 cut(s) 826
Cfr9I CCCGGG 1 cut(s) 978
CseI GACGC 4 cut(s) 87, 343, 637, 735
CspAI ACCGGT 2 cut(s) 573, 612
CviAII CATG 2 cut(s) 121, 1133
DdeI CTNAG 1 cut(s) 74
DinI GGCGCC 2 cut(s) 130, 873
DpnI GATC 2 cut(s) 634, 965
DpnII GATC 2 cut(s) 632, 963
DriI GACNNNNNGTC 1 cut(s) 613
EaeI YGGCCR 2 cut(s) 583, 600
Eam1105I GACNNNNNGTC 1 cut(s) 613
Eco130I CCWWGG 1 cut(s) 1132
Eco47I GGWCC 7 cut(s) 454, 576, 820, 835, 855, 922, 1099
Eco57I CTGAAG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 978
EcoO109I RGGNCCY 3 cut(s) 361, 496, 855
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 3 cut(s) 221, 816, 831
EcoT14I CCWWGG 1 cut(s) 1132
EgeI GGCGCC 2 cut(s) 130, 873
EheI GGCGCC 2 cut(s) 130, 873
ErhI CCWWGG 1 cut(s) 1132
Esp3I CGTCTC 1 cut(s) 655
FaeI CATG 2 cut(s) 124, 1136
FaiI YATR 3 cut(s) 122, 986, 1134
FalI AAGNNNNNCTT 2 cut(s) 1079, 1111
FaqI GGGAC 2 cut(s) 467, 935
FatI CATG 2 cut(s) 120, 1132
FauI CCCGC 3 cut(s) 13, 322, 912
FblI GTMKAC 1 cut(s) 321
FokI GGATG 1 cut(s) 1174
FspBI CTAG 1 cut(s) 524
GlaI GCGC 9 cut(s) 56, 130, 350, 442, 706, 708, 795, 873, 942
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 4 cut(s) 58, 132, 797, 875
HaeIII GGCC 9 cut(s) 313, 362, 474, 497, 585, 602, 624, 715, 828
HapII CCGG 9 cut(s) 451, 457, 481, 574, 586, 599, 613, 925, 979
HgaI GACGC 4 cut(s) 87, 343, 637, 735
HhaI GCGC 9 cut(s) 57, 131, 351, 443, 707, 709, 796, 874, 943
Hin1I GRCGYC 5 cut(s) 79, 129, 369, 746, 872
Hin1II CATG 2 cut(s) 124, 1136
Hin6I GCGC 9 cut(s) 55, 129, 349, 441, 705, 707, 794, 872, 941
HinP1I GCGC 9 cut(s) 55, 129, 349, 441, 705, 707, 794, 872, 941
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 8 cut(s) 382, 460, 808, 847, 908, 955, 1001, 1166
HpaII CCGG 9 cut(s) 451, 457, 481, 574, 586, 599, 613, 925, 979
HphI GGTGA 2 cut(s) 251, 751
Hpy166II GTNNAC 3 cut(s) 322, 759, 838
Hpy188I TCNGA 5 cut(s) 77, 337, 632, 852, 963
Hpy188III TCNNGA 9 cut(s) 140, 157, 386, 446, 844, 946, 967, 1058, 1106
Hpy8I GTNNAC 3 cut(s) 322, 759, 838
Hpy99I CGWCG 8 cut(s) 13, 31, 170, 245, 323, 371, 392, 751
HpyAV CCTTC 7 cut(s) 163, 464, 487, 868, 943, 1028, 1151
HpyCH4III ACNGT 1 cut(s) 780
HpyCH4IV ACGT 3 cut(s) 165, 303, 369
HpyCH4V TGCA 3 cut(s) 375, 518, 889
HpyF10VI GCNNNNNNNGC 9 cut(s) 78, 252, 406, 494, 800, 822, 883, 886, 1069
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 3 cut(s) 165, 303, 369
Hsp92I GRCGYC 5 cut(s) 79, 129, 369, 746, 872
Hsp92II CATG 2 cut(s) 124, 1136
HspAI GCGC 9 cut(s) 55, 129, 349, 441, 705, 707, 794, 872, 941
KasI GGCGCC 2 cut(s) 128, 871
KspI CCGCGG 1 cut(s) 826
Kzo9I GATC 2 cut(s) 632, 963
LmnI GCTCC 8 cut(s) 62, 231, 279, 548, 588, 645, 1060, 1146
Lsp1109I GCAGC 7 cut(s) 44, 363, 552, 688, 864, 873, 1081
MaeI CTAG 1 cut(s) 524
MaeII ACGT 3 cut(s) 165, 303, 369
MalI GATC 2 cut(s) 634, 965
MboI GATC 2 cut(s) 632, 963
MboII GAAGA 2 cut(s) 58, 1120
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 5 cut(s) 14, 47, 766, 992, 1137
Mly113I GGCGCC 2 cut(s) 129, 872
MlyI GAGTC 3 cut(s) 454, 917, 1160
MmeI TCCRAC 4 cut(s) 205, 324, 405, 570
MspA1I CMGCKG 3 cut(s) 35, 825, 877
MspI CCGG 9 cut(s) 451, 457, 481, 574, 586, 599, 613, 925, 979
MspR9I CCNGG 7 cut(s) 223, 452, 599, 818, 833, 979, 980
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 3 cut(s) 223, 818, 833
MvnI CGCG 6 cut(s) 8, 231, 387, 655, 707, 825
MwoI GCNNNNNNNGC 9 cut(s) 78, 252, 406, 494, 800, 822, 883, 886, 1069
NarI GGCGCC 2 cut(s) 129, 872
NciI CCSGG 4 cut(s) 452, 599, 979, 980
NcoI CCATGG 1 cut(s) 1132
NdeII GATC 2 cut(s) 632, 963
NlaIII CATG 2 cut(s) 124, 1136
NlaIV GGNNCC 6 cut(s) 130, 227, 455, 873, 923, 1101
NmeAIII GCCGAG 2 cut(s) 444, 735
NruI TCGCGA 1 cut(s) 387
PauI GCGCGC 1 cut(s) 705
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 5 cut(s) 382, 808, 847, 955, 1001
PinAI ACCGGT 2 cut(s) 573, 612
PleI GAGTC 3 cut(s) 454, 916, 1160
PluTI GGCGCC 2 cut(s) 132, 875
PpsI GAGTC 3 cut(s) 454, 916, 1160
PpuMI RGGWCCY 1 cut(s) 855
PshAI GACNNNNGTC 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 221, 816, 831
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 3 cut(s) 221, 816, 831
PspN4I GGNNCC 6 cut(s) 130, 227, 455, 873, 923, 1101
PspPPI RGGWCCY 1 cut(s) 855
PstNI CAGNNNCTG 1 cut(s) 421
PteI GCGCGC 1 cut(s) 705
PvuII CAGCTG 1 cut(s) 35
RruI TCGCGA 1 cut(s) 387
SacII CCGCGG 1 cut(s) 826
SalI GTCGAC 1 cut(s) 320
Sau3AI GATC 2 cut(s) 632, 963
SchI GAGTC 3 cut(s) 454, 917, 1160
ScrFI CCNGG 7 cut(s) 223, 452, 599, 818, 833, 979, 980
SduI GDGCHC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 680
SfoI GGCGCC 2 cut(s) 130, 873
Sfr303I CCGCGG 1 cut(s) 826
SgrBI CCGCGG 1 cut(s) 826
SinI GGWCC 7 cut(s) 454, 576, 820, 835, 855, 922, 1099
SmaI CCCGGG 1 cut(s) 980
Sse9I AATT 5 cut(s) 14, 47, 766, 992, 1137
SspDI GGCGCC 2 cut(s) 128, 871
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 7 cut(s) 221, 450, 597, 816, 831, 977, 978
StyI CCWWGG 1 cut(s) 1132
TaaI ACNGT 1 cut(s) 780
TaiI ACGT 3 cut(s) 168, 306, 372
TasI AATT 5 cut(s) 14, 47, 766, 992, 1137
TauI GCSGC 7 cut(s) 84, 671, 806, 828, 872, 877, 919
TfiI GAWTC 5 cut(s) 382, 808, 847, 955, 1001
TscAI CASTG 1 cut(s) 416
TseI GCWGC 7 cut(s) 32, 351, 540, 676, 877, 886, 1069
TspDTI ATGAA 2 cut(s) 735, 947
TspGWI ACGGA 4 cut(s) 26, 52, 801, 1005
TspMI CCCGGG 1 cut(s) 978
TspRI CASTG 1 cut(s) 416
VpaK11BI GGWCC 7 cut(s) 454, 576, 820, 835, 855, 922, 1099
XapI RAATTY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmaI CCCGGG 1 cut(s) 978
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 1 cut(s) 524
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.