Prupe.8G031200_v2.0.a1

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010852
Physical Location & Seq
Forward (+)
2959621 .. 2961429
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G031200.1

Sequence Viewer

Length: 1191 bp
ATGCCAGCGACGGAATATCAAGGGTCGTCAGCTGGGTTCAACAATATTGGCCGTTCAATCTTCAGCCTCCGACGCGATCAGTTTAATTCAATGGAAGCCCAGAGCCATAGCGGTGGTCAAGGAGCTGTAGACCTCGACTCTTTCCAAACCCACGTCGCCGATTGCTTCATCCACCTCTCCTCTTCCTCCCAAGACATCCTTTCCCTCCAATGGCTCCGAGACCTCCTCGACGCCTTCCTCCAAATCCAGCAAGAATTCAAGAACCTCCTCCTCTCCTCCATCAACAAGCCCCTCCTCTCCAAGCCCACCGTCGACCGCTTCCTCTCCGACTACTTCGAGCGCAGCGTCAAGGCCCTCGACGTCTGCAACGCCATCCGCGACGGCATCGAGCAGGTGCGGCAGTGGCTCAAGCTCCTAGAAATCGTCCTGGTCGCCCTCGGCCGCGACAGGACGCTCGGCGAGGGCCAATTTCGTAGAGCTAAGAAAGCGCTCGTCGACCTTGCCATCGCAATGCTCGATGACAAGGACTCCTCCAACACCACCCTGGCCCACAGGAACCGCTCCTTCGGCCGGAACAACCCGACAAAGGATCACCAGCATCACCAGCAGCACCGCTCGCTGGGCCACTTCCGATCTCTTTCCTGGAGCGTTTCACGGTCATGGTCGGCCGCGAGGCAGCTCCAGGCGATCGGAAATAATTTATACGCCCCGAGGCCGAACGAGATTGTGGCCTCCAACGGGCTAGCGCCCGCCGTTTTTACGGTGAATTCGGTTTTGCTGTTCGTAATGTGGGCCCTGGTGGCGGCGATCCCGTGCCAGGATAGGGGCTTGCAGGTGCATTTCACGGTGCCGAGGAGCTTCGCCTGGGCGGGGCCCATGCTGTCGCTGCACGAGCGGATTCTGGAGGAGTCGAAGCGGCGGGACCGGAGGAACGCCTGCGCGCTGCTGAAGGAGATTCATCAGATCGAAAGGTGCTCACGGCTGATCGGTGATCTCGCAGACTCGGTGCAGTTCCCGATCTCGGAGGAGAAGGAGACGGAGGTCCGGCAGAGAGTGCAGGAATTGTCGAGCCTGTGTGAGGGGATTAAGGAGGGTTTGGATCCTCTGGAACGGCAGGTCAGGGAGGTGTTCCATGGAATCGTGAAAAGCCGAACAGAGGGCATGGATTCTTATGGAAGACCGAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

397

Amino Acids

44.8

Weight (kDa)

8.21

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18740 AT1G74450
fragaria_vesca FvH4_2g13680 FvH4_2g13680
malus_domestica MD05G1026700.v1.1 MD10G1025900.v1.1
prunus_persica Prupe.8G031200_v2.0.a1
pyrus_communis pycom05g01850 pycom10g01740
rosa_chinensis RchiOBHm_Chr6g0275361
rosa_laevigata RLG00000013471
rosa_multiflora Rmu_co8417379.1_g000001 Rmu_sc0004143.1_g000001 Rmu_sc0019329.1_g000002
rosa_roxburghii Rroxscaffold_7G00193380
rosa_rugosa Rorug06G0091100
rosa_samantha Rh6AG205000 Rh6CG210200 Rh6DG200500
rosa_wichuraiana Rw6G017790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 382, 823
AatII GACGTC 1 cut(s) 363
Acc36I ACCTGC 3 cut(s) 382, 823, 1105
AccB1I GGYRCC 1 cut(s) 847
AccBSI CCGCTC 3 cut(s) 561, 615, 895
AccI GTMKAC 3 cut(s) 129, 312, 495
AccII CGCG 5 cut(s) 75, 378, 444, 671, 941
AclWI GGATC 4 cut(s) 597, 802, 1094, 1107
AcoI YGGCCR 4 cut(s) 49, 439, 568, 666
AcsI RAATTY 2 cut(s) 254, 766
AcuI CTGAAG 2 cut(s) 46, 968
AcyI GRCGYC 2 cut(s) 231, 360
AfeI AGCGCT 1 cut(s) 489
AgsI TTSAA 4 cut(s) 40, 57, 90, 259
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 7 cut(s) 426, 543, 641, 681, 795, 816, 863
AluBI AGCT 6 cut(s) 32, 125, 412, 479, 679, 858
AluI AGCT 6 cut(s) 32, 125, 412, 479, 679, 858
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 2 cut(s) 213, 1028
AlwI GGATC 4 cut(s) 597, 802, 1094, 1107
Ama87I CYCGRG 1 cut(s) 709
Aor51HI AGCGCT 1 cut(s) 489
ApaI GGGCCC 2 cut(s) 796, 876
ApeKI GCWGC 5 cut(s) 342, 607, 676, 886, 943
ApoI RAATTY 2 cut(s) 254, 766
AspLEI GCGC 5 cut(s) 342, 490, 748, 941, 943
AsuHPI GGTGA 4 cut(s) 584, 593, 775, 1001
AsuNHI GCTAGC 1 cut(s) 742
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 2 cut(s) 922, 1042
BaeGI GKGCMC 2 cut(s) 796, 876
BamHI GGATCC 1 cut(s) 1099
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 796, 876
BauI CACGAG 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 1183
Bbv12I GWGCWC 1 cut(s) 977
BbvI GCAGC 5 cut(s) 354, 619, 688, 873, 930
BccI CCATC 3 cut(s) 287, 380, 512
BceAI ACGGC 5 cut(s) 36, 397, 737, 995, 1127
BciT130I CCWGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
BcoDI GTCTC 2 cut(s) 213, 1028
BfaI CTAG 2 cut(s) 416, 743
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 2 cut(s) 491, 749
BfuAI ACCTGC 3 cut(s) 382, 823, 1105
BglI GCCNNNNNGGC 1 cut(s) 800
Bme1390I CCNGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
Bme18I GGWCC 2 cut(s) 922, 1042
BmeT110I CYCGRG 1 cut(s) 709
BmgBI CACGTC 1 cut(s) 154
BmiI GGNNCC 8 cut(s) 215, 557, 794, 849, 873, 874, 923, 1101
BmrFI CCNGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
BmsI GCATC 2 cut(s) 393, 607
BmtI GCTAGC 1 cut(s) 746
BoxI GACNNNNGTC 1 cut(s) 1040
BpiI GAAGAC 1 cut(s) 1183
BplI GAGNNNNNCTC 2 cut(s) 210, 242
BpmI CTGGAG 3 cut(s) 664, 665, 923
BpuEI CTTGAG 1 cut(s) 392
BsaHI GRCGYC 2 cut(s) 231, 360
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 7 cut(s) 436, 543, 710, 795, 851, 864, 1132
BsaWI WCCGGW 1 cut(s) 924
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bse3DI GCAATG 1 cut(s) 516
BseBI CCWGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
BseDI CCNNGG 7 cut(s) 436, 543, 710, 795, 851, 864, 1132
BseGI GGATG 3 cut(s) 168, 195, 372
BseMI GCAATG 1 cut(s) 516
BsePI GCGCGC 1 cut(s) 939
BseSI GKGCMC 2 cut(s) 796, 876
BseX3I CGGCCG 3 cut(s) 439, 568, 666
BseXI GCAGC 5 cut(s) 354, 619, 688, 873, 930
BseYI CCCAGC 2 cut(s) 32, 619
BsgI GTGCAG 3 cut(s) 872, 1028, 1076
Bsh1236I CGCG 5 cut(s) 75, 378, 444, 671, 941
Bsh1285I CGRYCG 5 cut(s) 316, 442, 571, 669, 690
BshNI GGYRCC 1 cut(s) 847
BsiEI CGRYCG 5 cut(s) 316, 442, 571, 669, 690
BsiHKAI GWGCWC 1 cut(s) 977
BsiHKCI CYCGRG 1 cut(s) 709
BsiSI CCGG 3 cut(s) 571, 925, 1045
BslFI GGGAC 1 cut(s) 935
BsmAI GTCTC 2 cut(s) 213, 1028
BsmBI CGTCTC 1 cut(s) 1028
BsmFI GGGAC 1 cut(s) 935
Bso31I GGTCTC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 709
Bsp120I GGGCCC 2 cut(s) 792, 872
Bsp1286I GDGCHC 3 cut(s) 796, 876, 977
Bsp19I CCATGG 1 cut(s) 1132
BspFNI CGCG 5 cut(s) 75, 378, 444, 671, 941
BspLI GGNNCC 8 cut(s) 215, 557, 794, 849, 873, 874, 923, 1101
BspMI ACCTGC 3 cut(s) 382, 823, 1105
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 4 cut(s) 597, 802, 1094, 1107
BspT107I GGYRCC 1 cut(s) 847
BspTNI GGTCTC 1 cut(s) 213
BsrBI CCGCTC 3 cut(s) 561, 615, 895
BsrDI GCAATG 1 cut(s) 516
BssECI CCNNGG 7 cut(s) 436, 543, 710, 795, 851, 864, 1132
BssHII GCGCGC 1 cut(s) 939
BssNI GRCGYC 2 cut(s) 231, 360
BssSI CACGAG 1 cut(s) 890
BssT1I CCWWGG 1 cut(s) 1132
Bst2BI CACGAG 1 cut(s) 890
Bst2UI CCWGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
Bst4CI ACNGT 4 cut(s) 310, 657, 763, 847
Bst6I CTCTTC 1 cut(s) 187
BstACI GRCGYC 2 cut(s) 231, 360
BstAPI GCANNNNNTGC 1 cut(s) 1054
BstC8I GCNNGC 7 cut(s) 6, 617, 744, 750, 830, 937, 941
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 1 cut(s) 1132
BstENI CCTNNNNNAGG 1 cut(s) 1076
BstF5I GGATG 3 cut(s) 168, 195, 372
BstFNI CGCG 5 cut(s) 75, 378, 444, 671, 941
BstH2I RGCGCY 2 cut(s) 491, 749
BstHHI GCGC 5 cut(s) 342, 490, 748, 941, 943
BstMAI GTCTC 2 cut(s) 213, 1028
BstMCI CGRYCG 5 cut(s) 316, 442, 571, 669, 690
BstNI CCWGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
BstPAI GACNNNNGTC 1 cut(s) 1040
BstSCI CCNGG 7 cut(s) 426, 543, 641, 681, 795, 816, 863
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 2 cut(s) 796, 876
BstUI CGCG 5 cut(s) 75, 378, 444, 671, 941
BstV1I GCAGC 5 cut(s) 354, 619, 688, 873, 930
BstV2I GAAGAC 1 cut(s) 1183
BstX2I RGATCY 1 cut(s) 1099
BstXI CCANNNNNNTGG 1 cut(s) 113
BstYI RGATCY 1 cut(s) 1099
BstZI CGGCCG 3 cut(s) 439, 568, 666
BtgI CCRYGG 1 cut(s) 1132
BtgZI GCGATG 1 cut(s) 490
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 168, 195, 372
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 407
BveI ACCTGC 3 cut(s) 382, 823, 1105
Cac8I GCNNGC 7 cut(s) 6, 617, 744, 750, 830, 937, 941
CfoI GCGC 5 cut(s) 342, 490, 748, 941, 943
CseI GACGC 4 cut(s) 81, 239, 334, 460
CviAII CATG 4 cut(s) 660, 877, 1133, 1162
DdeI CTNAG 1 cut(s) 480
EaeI YGGCCR 4 cut(s) 49, 439, 568, 666
EagI CGGCCG 3 cut(s) 439, 568, 666
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
EclXI CGGCCG 3 cut(s) 439, 568, 666
Eco130I CCWWGG 1 cut(s) 1132
Eco24I GRGCYC 2 cut(s) 796, 876
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 922, 1042
Eco47III AGCGCT 1 cut(s) 489
Eco52I CGGCCG 3 cut(s) 439, 568, 666
Eco57I CTGAAG 2 cut(s) 46, 968
Eco88I CYCGRG 1 cut(s) 709
EcoNI CCTNNNNNAGG 1 cut(s) 1076
EcoO109I RGGNCCY 3 cut(s) 352, 793, 872
EcoRI GAATTC 2 cut(s) 254, 766
EcoRII CCWGG 7 cut(s) 426, 543, 641, 681, 795, 816, 863
EcoT14I CCWWGG 1 cut(s) 1132
EcoT38I GRGCYC 2 cut(s) 796, 876
ErhI CCWWGG 1 cut(s) 1132
Esp3I CGTCTC 1 cut(s) 1028
FaeI CATG 4 cut(s) 663, 880, 1136, 1165
FaiI YATR 7 cut(s) 108, 661, 703, 878, 1134, 1163, 1173
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 935
FatI CATG 4 cut(s) 659, 876, 1132, 1161
FauI CCCGC 3 cut(s) 757, 862, 912
FblI GTMKAC 3 cut(s) 129, 312, 495
FokI GGATG 3 cut(s) 155, 182, 359
FriOI GRGCYC 2 cut(s) 796, 876
FspBI CTAG 2 cut(s) 416, 743
GlaI GCGC 5 cut(s) 341, 489, 747, 940, 942
GsaI CCCAGC 2 cut(s) 36, 623
GsuI CTGGAG 3 cut(s) 664, 665, 923
HaeII RGCGCY 2 cut(s) 491, 749
HapII CCGG 3 cut(s) 571, 925, 1045
HgaI GACGC 4 cut(s) 81, 239, 334, 460
HhaI GCGC 5 cut(s) 342, 490, 748, 941, 943
Hin1I GRCGYC 2 cut(s) 231, 360
Hin1II CATG 4 cut(s) 663, 880, 1136, 1165
Hin6I GCGC 5 cut(s) 340, 488, 746, 939, 941
HinP1I GCGC 5 cut(s) 340, 488, 746, 939, 941
HincII GTYRAC 2 cut(s) 313, 496
HindII GTYRAC 2 cut(s) 313, 496
HinfI GANTC 8 cut(s) 137, 527, 898, 908, 955, 1001, 1137, 1166
HpaII CCGG 3 cut(s) 571, 925, 1045
HphI GGTGA 4 cut(s) 584, 593, 775, 1001
Hpy166II GTNNAC 3 cut(s) 130, 313, 496
Hpy188I TCNGA 7 cut(s) 71, 218, 328, 632, 692, 963, 1024
Hpy188III TCNNGA 5 cut(s) 259, 902, 1015, 1106, 1141
Hpy8I GTNNAC 3 cut(s) 130, 313, 496
Hpy99I CGWCG 8 cut(s) 13, 75, 158, 233, 314, 362, 383, 497
HpyAV CCTTC 4 cut(s) 244, 574, 943, 1024
HpyCH4III ACNGT 4 cut(s) 310, 657, 763, 847
HpyCH4IV ACGT 2 cut(s) 153, 360
HpyCH4V TGCA 6 cut(s) 366, 832, 838, 889, 1009, 1057
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 2 cut(s) 153, 360
Hsp92I GRCGYC 2 cut(s) 231, 360
Hsp92II CATG 4 cut(s) 663, 880, 1136, 1165
HspAI GCGC 5 cut(s) 340, 488, 746, 939, 941
LmnI GCTCC 7 cut(s) 122, 219, 417, 566, 645, 684, 855
Lsp1109I GCAGC 5 cut(s) 354, 619, 688, 873, 930
LweI GCATC 2 cut(s) 393, 607
MaeI CTAG 2 cut(s) 416, 743
MaeII ACGT 2 cut(s) 153, 360
MbiI CCGCTC 3 cut(s) 561, 615, 895
MboII GAAGA 3 cut(s) 52, 174, 1188
MflI RGATCY 1 cut(s) 1099
MhlI GDGCHC 3 cut(s) 796, 876, 977
MluCI AATT 6 cut(s) 85, 254, 467, 697, 766, 1061
MlyI GAGTC 4 cut(s) 131, 521, 917, 995
MmeI TCCRAC 4 cut(s) 94, 351, 558, 759
MseI TTAA 2 cut(s) 84, 1086
MslI CAYNNNNRTG 3 cut(s) 111, 509, 658
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 3 cut(s) 571, 925, 1045
MspR9I CCNGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
MvaI CCWGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
MvnI CGCG 5 cut(s) 75, 378, 444, 671, 941
NcoI CCATGG 1 cut(s) 1132
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 4 cut(s) 663, 880, 1136, 1165
NlaIV GGNNCC 8 cut(s) 215, 557, 794, 849, 873, 874, 923, 1101
NmeAIII GCCGAG 3 cut(s) 417, 435, 876
PaqCI CACCTGC 2 cut(s) 382, 823
PauI GCGCGC 1 cut(s) 939
PcsI WCGNNNNNNNCGW 3 cut(s) 342, 375, 513
PfeI GAWTC 4 cut(s) 898, 955, 1137, 1166
PfoI TCCNGGA 1 cut(s) 641
Ple19I CGATCG 1 cut(s) 690
PleI GAGTC 4 cut(s) 131, 521, 916, 995
PpsI GAGTC 4 cut(s) 131, 521, 916, 995
PshAI GACNNNNGTC 1 cut(s) 1040
Psp6I CCWGG 7 cut(s) 426, 543, 641, 681, 795, 816, 863
PspFI CCCAGC 2 cut(s) 32, 619
PspGI CCWGG 7 cut(s) 426, 543, 641, 681, 795, 816, 863
PspN4I GGNNCC 8 cut(s) 215, 557, 794, 849, 873, 874, 923, 1101
PspOMI GGGCCC 2 cut(s) 792, 872
PsuI RGATCY 1 cut(s) 1099
PteI GCGCGC 1 cut(s) 939
PvuI CGATCG 1 cut(s) 690
PvuII CAGCTG 1 cut(s) 32
RseI CAYNNNNRTG 3 cut(s) 111, 509, 658
SalI GTCGAC 2 cut(s) 311, 494
SaqAI TTAA 2 cut(s) 84, 1086
SchI GAGTC 4 cut(s) 131, 521, 917, 995
ScrFI CCNGG 7 cut(s) 428, 545, 643, 683, 797, 818, 865
SduI GDGCHC 3 cut(s) 796, 876, 977
SfaNI GCATC 2 cut(s) 393, 607
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 2 cut(s) 922, 1042
SmiMI CAYNNNNRTG 3 cut(s) 111, 509, 658
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 6 cut(s) 85, 254, 467, 697, 766, 1061
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 416, 743
StyD4I CCNGG 7 cut(s) 426, 543, 641, 681, 795, 816, 863
StyI CCWWGG 1 cut(s) 1132
TaaI ACNGT 4 cut(s) 310, 657, 763, 847
TaiI ACGT 2 cut(s) 156, 363
TasI AATT 6 cut(s) 85, 254, 467, 697, 766, 1061
TauI GCSGC 5 cut(s) 400, 444, 671, 806, 919
TfiI GAWTC 4 cut(s) 898, 955, 1137, 1166
Tru1I TTAA 2 cut(s) 84, 1086
Tru9I TTAA 2 cut(s) 84, 1086
TscAI CASTG 1 cut(s) 407
TseI GCWGC 5 cut(s) 342, 607, 676, 886, 943
TspDTI ATGAA 2 cut(s) 157, 947
TspGWI ACGGA 2 cut(s) 26, 1052
TspRI CASTG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 922, 1042
XagI CCTNNNNNAGG 1 cut(s) 1076
XapI RAATTY 2 cut(s) 254, 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmiI GTMKAC 3 cut(s) 129, 312, 495
XspI CTAG 2 cut(s) 416, 743
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.