Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Forward (+)

6466667 .. 6469984

Gene Structure 3318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18750.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGAAGGGTTAAGTTGAAGATTAAAAGACTTGAGAGCACAAGCAACAGGCAAGTTACATACACGAAGAGAAAAAATGGGATTTTGAAGAAAGCCAAAGAGTTATCGATTTTGTGTGATATTGATATTGTCCTTCTTATGTTTTCCCCTACCGGAAGAGCTACTGCTTTCCATGGAGAACACAGTTGCATTGAAGAGGTTATTTCCAAGTTTGCGCAATTAACTCCACAAGAAAGGACAAAAAGGAAACTGGAGAGCCTTGAAGCATTGAAGAAAACTTTTAAGAAACTGGATCATGATGTAAATATACATGACTTTTTAGGAGCAAGGAATCAAACTATTGAGGGTCTAAGTAACCAAGTAGCCATTTACCAAGCTCAGCTAATGGAGTGTCATAGGAGGTTGAGTTGTTGGACGAACATCGATAGAATAGAAAACACTGAGCACCTCGATTTATTGGAAGAATCATTGAGGAAATCCATTGAAAGAATCCAGATTCACAAGGAACATTACAGAAAGAACCAACTCTTGCCAATAGAATGTGCAACAACACAGTTTCACAGCGGGATACAGTTGCCTATGGCGATGGGAGGTAATAGTAGTATGCAAGAAGCTCACTCCATGTCTTGGCTTCCTGATAATGATCACCAGCAAACAATCTTACCTGGTGATTCCAGTTTTCTTCCCCATAGAGAGATGGATGGTTCGATTCCCGTTTACTCAAGCTGCTTCTTTGAGTCTACGAAACCAGAAGATCAGATATGCAGCAACCCGGGACAACAGTTTGAGCAGTTAGAACAACAAGGAAACGGTTGTTTGGGGTTACAACAACTTGGAGAGGAATATTCATATCCTACACCGTTTGGTACTACTTTGGGAATGGAAGAAGATCAAGAGAAAAAGATAAAATCTGAAATGGAATTGAACAACTTGCAACAACAGCAACAGCAACAACAACAACAACAACAACAAGATCCTTCAATGTATGATCCCATGGCTAATAATAATGGTGGCTGCTTTCAGATTCCTCATGATCAGTCCATGTTTGTCAATGATCATCATCATCATCATCACCACCATCATCAAAATTGGGTTCCAGATTCAATGTTTGGTCAGACTTCTTACAACCAGGTTTGTGTGTTCACACCTCCATTGGAACTATCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

389

Amino Acids

44.88

Weight (kDa)

6.05

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.6e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	740
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	3 cut(s)	300, 968, 983
AfaI	GTAC	1 cut(s)	868
AfiI	CCNNNNNNNGG	1 cut(s)	627
AgsI	TTSAA	9 cut(s)	19, 88, 194, 263, 271, 485, 925, 981, 1104
AjnI	CCWGG	2 cut(s)	664, 1128
AluBI	AGCT	5 cut(s)	161, 377, 382, 614, 726
AluI	AGCT	5 cut(s)	161, 377, 382, 614, 726
Alw21I	GWGCWC	2 cut(s)	41, 447
AlwI	GGATC	3 cut(s)	300, 968, 983
Ama87I	CYCGRG	1 cut(s)	772
ApeKI	GCWGC	3 cut(s)	726, 765, 1014
AspLEI	GCGC	1 cut(s)	217
AsuC2I	CCSGG	2 cut(s)	773, 774
AsuHPI	GGTGA	3 cut(s)	638, 680, 1064
AvaI	CYCGRG	1 cut(s)	772
Bbv12I	GWGCWC	2 cut(s)	41, 447
BbvI	GCAGC	3 cut(s)	713, 777, 1001
BccI	CCATC	4 cut(s)	580, 691, 695, 1086
BciT130I	CCWGG	2 cut(s)	666, 1130
BciVI	GTATCC	1 cut(s)	561
BclI	TGATCA	3 cut(s)	643, 1033, 1054
BcnI	CCSGG	2 cut(s)	773, 774
BfaI	CTAG	1 cut(s)	1164
BfuI	GTATCC	1 cut(s)	561
BisI	GCNGC	3 cut(s)	727, 766, 1015
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	3 cut(s)	728, 767, 1016
Bme1390I	CCNGG	4 cut(s)	666, 773, 774, 1130
BmeT110I	CYCGRG	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	1095
BmrFI	CCNGG	4 cut(s)	666, 773, 774, 1130
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	53, 706
BpuMI	CCSGG	2 cut(s)	773, 774
Bsa29I	ATCGAT	2 cut(s)	107, 423
BsaBI	GATNNNNATC	2 cut(s)	642, 1059
BsaJI	CCNNGG	3 cut(s)	172, 772, 993
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	3 cut(s)	255, 294, 675
Bse8I	GATNNNNATC	2 cut(s)	642, 1059
BseBI	CCWGG	2 cut(s)	666, 1130
BseCI	ATCGAT	2 cut(s)	107, 423
BseDI	CCNNGG	3 cut(s)	172, 772, 993
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	2 cut(s)	642, 1059
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	392, 432
BseNI	ACTGG	3 cut(s)	255, 294, 675
BseXI	GCAGC	3 cut(s)	713, 777, 1001
BshVI	ATCGAT	2 cut(s)	107, 423
BsiHKAI	GWGCWC	2 cut(s)	41, 447
BsiHKCI	CYCGRG	1 cut(s)	772
BsiSI	CCGG	2 cut(s)	153, 773
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	772
Bsp1286I	GDGCHC	2 cut(s)	41, 447
Bsp143I	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	2 cut(s)	172, 993
BspACI	CCGC	1 cut(s)	564
BspCNI	CTCAG	2 cut(s)	391, 433
BspDI	ATCGAT	2 cut(s)	107, 423
BspHI	TCATGA	2 cut(s)	295, 1030
BspLI	GGNNCC	1 cut(s)	1095
BspPI	GGATC	3 cut(s)	300, 968, 983
BspQI	GCTCTTC	1 cut(s)	151
BsrI	ACTGG	3 cut(s)	255, 294, 675
BssECI	CCNNGG	3 cut(s)	172, 772, 993
BssMI	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
BssT1I	CCWWGG	2 cut(s)	172, 993
Bst2UI	CCWGG	2 cut(s)	666, 1130
Bst4CI	ACNGT	6 cut(s)	185, 555, 573, 783, 812, 861
Bst6I	CTCTTC	3 cut(s)	62, 151, 189
BstDEI	CTNAG	3 cut(s)	350, 378, 441
BstDSI	CCRYGG	2 cut(s)	172, 993
BstF5I	GGATG	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	8 cut(s)	295, 646, 757, 892, 976, 991, 1036, 1057
BstMBI	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	940
BstNI	CCWGG	2 cut(s)	666, 1130
BstSCI	CCNGG	4 cut(s)	664, 771, 772, 1128
BstV1I	GCAGC	3 cut(s)	713, 777, 1001
BstX2I	RGATCY	1 cut(s)	973
BstYI	RGATCY	1 cut(s)	973
Bsu15I	ATCGAT	2 cut(s)	107, 423
BsuI	GTATCC	1 cut(s)	561
BsuTUI	ATCGAT	2 cut(s)	107, 423
BtgI	CCRYGG	2 cut(s)	172, 993
BtgZI	GCGATG	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	438
CciI	TCATGA	2 cut(s)	295, 1030
CfoI	GCGC	1 cut(s)	217
Cfr9I	CCCGGG	1 cut(s)	772
ClaI	ATCGAT	2 cut(s)	107, 423
CsiI	ACCWGGT	2 cut(s)	664, 1128
Csp6I	GTAC	1 cut(s)	867
CviAII	CATG	7 cut(s)	173, 296, 311, 622, 994, 1031, 1042
CviQI	GTAC	1 cut(s)	867
DdeI	CTNAG	3 cut(s)	350, 378, 441
DpnI	GATC	8 cut(s)	294, 645, 756, 891, 975, 990, 1035, 1056
DpnII	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
Eam1104I	CTCTTC	3 cut(s)	62, 151, 189
EarI	CTCTTC	3 cut(s)	62, 151, 189
Eco130I	CCWWGG	2 cut(s)	172, 993
Eco88I	CYCGRG	1 cut(s)	772
EcoRII	CCWGG	2 cut(s)	664, 1128
EcoT14I	CCWWGG	2 cut(s)	172, 993
ErhI	CCWWGG	2 cut(s)	172, 993
FaeI	CATG	7 cut(s)	176, 299, 314, 625, 997, 1034, 1045
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	7 cut(s)	172, 295, 310, 621, 993, 1030, 1041
FauI	CCCGC	1 cut(s)	557
FbaI	TGATCA	3 cut(s)	643, 1033, 1054
FblI	GTMKAC	1 cut(s)	740
Fnu4HI	GCNGC	3 cut(s)	727, 766, 1015
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	3 cut(s)	727, 766, 1015
FspBI	CTAG	1 cut(s)	1164
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	3 cut(s)	727, 766, 1015
GsuI	CTGGAG	1 cut(s)	272
HapII	CCGG	2 cut(s)	153, 773
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	7 cut(s)	176, 299, 314, 625, 997, 1034, 1045
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	9 cut(s)	331, 464, 489, 496, 671, 709, 737, 1024, 1100
HpaII	CCGG	2 cut(s)	153, 773
HphI	GGTGA	3 cut(s)	638, 680, 1064
Hpy166II	GTNNAC	3 cut(s)	718, 741, 1143
Hpy188I	TCNGA	4 cut(s)	759, 913, 1023, 1116
Hpy188III	TCNNGA	6 cut(s)	296, 493, 635, 893, 1031, 1097
Hpy8I	GTNNAC	3 cut(s)	718, 741, 1143
HpyAV	CCTTC	2 cut(s)	143, 987
HpyCH4III	ACNGT	6 cut(s)	185, 555, 573, 783, 812, 861
HpyCH4V	TGCA	5 cut(s)	189, 545, 607, 765, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	940
HpyF3I	CTNAG	3 cut(s)	350, 378, 441
Hsp92II	CATG	7 cut(s)	176, 299, 314, 625, 997, 1034, 1045
HspAI	GCGC	1 cut(s)	215
Ksp22I	TGATCA	3 cut(s)	643, 1033, 1054
Kzo9I	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	3 cut(s)	713, 777, 1001
MabI	ACCWGGT	2 cut(s)	664, 1128
MaeI	CTAG	1 cut(s)	1164
MaeIII	GTNAC	3 cut(s)	55, 353, 822
MalI	GATC	8 cut(s)	294, 645, 756, 891, 975, 990, 1035, 1056
MboI	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	2 cut(s)	41, 447
MluCI	AATT	3 cut(s)	218, 920, 1087
MlyI	GAGTC	1 cut(s)	746
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	9 cut(s)	190, 337, 393, 458, 465, 584, 832, 1038, 1158
MseI	TTAA	4 cut(s)	12, 24, 221, 282
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	2 cut(s)	153, 773
MspR9I	CCNGG	4 cut(s)	666, 773, 774, 1130
MvaI	CCWGG	2 cut(s)	666, 1130
MwoI	GCNNNNNNNGC	1 cut(s)	940
NciI	CCSGG	2 cut(s)	773, 774
NcoI	CCATGG	2 cut(s)	172, 993
NdeII	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
NlaIII	CATG	7 cut(s)	176, 299, 314, 625, 997, 1034, 1045
NlaIV	GGNNCC	1 cut(s)	1095
NsbI	TGCGCA	1 cut(s)	216
PagI	TCATGA	2 cut(s)	295, 1030
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	8 cut(s)	331, 464, 489, 496, 671, 709, 1024, 1100
PflMI	CCANNNNNTGG	1 cut(s)	627
PkrI	GCNGC	3 cut(s)	728, 767, 1016
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
Psp6I	CCWGG	2 cut(s)	664, 1128
PspGI	CCWGG	2 cut(s)	664, 1128
PspN4I	GGNNCC	1 cut(s)	1095
PsuI	RGATCY	1 cut(s)	973
RsaI	GTAC	1 cut(s)	868
RsaNI	GTAC	1 cut(s)	867
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	12, 24, 221, 282
SatI	GCNGC	3 cut(s)	727, 766, 1015
Sau3AI	GATC	8 cut(s)	292, 643, 754, 889, 973, 988, 1033, 1054
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	4 cut(s)	666, 773, 774, 1130
SduI	GDGCHC	2 cut(s)	41, 447
SexAI	ACCWGGT	2 cut(s)	664, 1128
SmaI	CCCGGG	1 cut(s)	774
SmlI	CTYRAG	2 cut(s)	32, 721
SmoI	CTYRAG	2 cut(s)	32, 721
Sse9I	AATT	3 cut(s)	218, 920, 1087
SsiI	CCGC	1 cut(s)	564
SspI	AATATT	1 cut(s)	845
SspMI	CTAG	1 cut(s)	1164
StyD4I	CCNGG	4 cut(s)	664, 771, 772, 1128
StyI	CCWWGG	2 cut(s)	172, 993
TaaI	ACNGT	6 cut(s)	185, 555, 573, 783, 812, 861
TaqI	TCGA	4 cut(s)	107, 423, 450, 707
TasI	AATT	3 cut(s)	218, 920, 1087
TfiI	GAWTC	8 cut(s)	331, 464, 489, 496, 671, 709, 1024, 1100
Tru1I	TTAA	4 cut(s)	12, 24, 221, 282
Tru9I	TTAA	4 cut(s)	12, 24, 221, 282
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	3 cut(s)	726, 765, 1014
TspDTI	ATGAA	1 cut(s)	837
TspMI	CCCGGG	1 cut(s)	772
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	627
XmaI	CCCGGG	1 cut(s)	772
XmiI	GTMKAC	1 cut(s)	740
XspI	CTAG	1 cut(s)	1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.