Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Forward (+)

28177961 .. 28182950

Gene Structure 4990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G276600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGAAGGGTAAAGCTCAAGATAAAGAGGTTGGAGAATACAAATGGGCGTCAAGCAACTTATGCTAAAAGGAAGCATGGCATCATGAAAAAGGCTAATGAATTATCTATACTCTGTGACATAGATATTGTTCTTCTCATGTTTTCACCAACCGGAAAGCCTTCTTTATGCAGTGGAAAACGCAGTAGCATTGAAGAGGTTATAGCAAAGTTTGCTCAACTAACTCCACAGGAAAGAGCCAAAAGGAAACTGGAAAGCCTCGAAGCACTGAAGAAAACATTCAAGAAGTTGGATCATGACGTGAATATACAAGAGTTTTTGGGTACAAGTTCTCAAACAATTGAGGATCTGACTAACCAGTCTAGGTTATTGCAAACCCAACTTTCCGAAATAAAAAAGAGACTAAGCTGTTGGTCTAGCCCTGATAAGATCACCAGTGTAGAACAATTGGGGCAAATGGAAGATTCAGTAAGAGAATCGCTTAACCAGATTCGGGCAAATAAGGAAAACCTACAAAAGCAGCAACTTATGTCGTTAGAGTGCACTAGTCAGTTCCAAAATGGGTTGCATATACCTTTCAGCATGGGTGCTGAGCAGCAGCTCCAGCCTTTGTCATGGATTCCGACTAATGAAAGCCGGCATATGGTTTTACCGGAGGACCCAAACTTGCTTCCCCATAGGGATATGGAATGCTCTGCAAGTTCCTCCTTTGGGAGTTATTCTGGTTACCTTGGTACAGGAAAAAGTTCAGAGATTTCTACTTCTGGGCAAGAAAATGGTATTCTTAATGACTTAAGTAGAACTGCACCGCTGAGGCTACAGCTGGGTGGGCAATTTCCTTACCTGCCGTACAATCTCAATATGCTGACTGATACGAAATTCCAGCCACCAGCAGAAATGAGTCCTCAAGAAAACCCTGTGGAGTATCATGTTAATGGAAGCTTTGAAGCTCCTAGACCCGAGTTTTACCCTACTCAGCATAGTTGGGCCTCTACATCTGGTCCTTGTGCTGTTACCATGTTTGACGAGCATTTATATTCCCAGTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

351

Amino Acids

39.42

Weight (kDa)

7.08

Isoelectric Point (pI)

61.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	852
AciI	CCGC	1 cut(s)	809
AclWI	GGATC	2 cut(s)	300, 354
AcsI	RAATTY	1 cut(s)	878
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	3 cut(s)	325, 736, 851
AfiI	CCNNNNNNNGG	3 cut(s)	493, 643, 711
AflII	CTTAAG	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	194, 283, 947
AhlI	ACTAGT	1 cut(s)	545
AjiI	CACGTC	1 cut(s)	301
AluBI	AGCT	6 cut(s)	16, 408, 601, 823, 942, 950
AluI	AGCT	6 cut(s)	16, 408, 601, 823, 942, 950
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	394
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	300, 354
Ama87I	CYCGRG	1 cut(s)	959
AoxI	GGCC	1 cut(s)	987
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	520, 595, 598
ApoI	RAATTY	1 cut(s)	878
Asp700I	GAANNNNTTC	3 cut(s)	160, 278, 745
AspS9I	GGNCC	3 cut(s)	658, 987, 1001
AsuHPI	GGTGA	2 cut(s)	138, 424
AvaI	CYCGRG	1 cut(s)	959
AvaII	GGWCC	2 cut(s)	658, 1001
BaeGI	GKGCMC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	545
BbvCI	CCTCAGC	1 cut(s)	812
BbvI	GCAGC	3 cut(s)	532, 607, 610
BceAI	ACGGC	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	394
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	4 cut(s)	363, 417, 546, 954
BfmI	CTRYAG	1 cut(s)	818
BfrI	CTTAAG	1 cut(s)	793
BfuAI	ACCTGC	1 cut(s)	852
BisI	GCNGC	3 cut(s)	521, 596, 599
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	3 cut(s)	522, 597, 600
Bme18I	GGWCC	2 cut(s)	658, 1001
BmeT110I	CYCGRG	1 cut(s)	959
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	658, 987, 1001
BmiI	GGNNCC	1 cut(s)	660
BmrI	ACTGGG	1 cut(s)	1036
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	1036
BpmI	CTGGAG	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	812
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	891
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	2 cut(s)	152, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 643, 711
Bse118I	RCCGGY	1 cut(s)	636
Bse1I	ACTGG	4 cut(s)	255, 358, 435, 1042
BseDI	CCNNGG	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	493, 643, 711
BseMII	CTCAG	3 cut(s)	582, 803, 989
BseNI	ACTGG	4 cut(s)	255, 358, 435, 1042
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	532, 607, 610
BseYI	CCCAGC	1 cut(s)	823
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	1 cut(s)	989
BsiHKAI	GWGCWC	1 cut(s)	545
BsiHKCI	CYCGRG	1 cut(s)	959
BsiSI	CCGG	3 cut(s)	153, 637, 653
BslI	CCNNNNNNNGG	3 cut(s)	493, 643, 711
BsmAI	GTCTC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	1 cut(s)	989
BsoBI	CYCGRG	1 cut(s)	959
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	292, 346, 429
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	1 cut(s)	809
BspANI	GGCC	1 cut(s)	989
BspCNI	CTCAG	3 cut(s)	583, 804, 988
BspHI	TCATGA	2 cut(s)	84, 295
BspLI	GGNNCC	1 cut(s)	660
BspMI	ACCTGC	1 cut(s)	852
BspPI	GGATC	2 cut(s)	300, 354
BspTI	CTTAAG	1 cut(s)	793
BsrFI	RCCGGY	1 cut(s)	636
BsrI	ACTGG	4 cut(s)	255, 358, 435, 1042
BssAI	RCCGGY	1 cut(s)	636
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	3 cut(s)	292, 346, 429
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	730
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	49
BstAFI	CTTAAG	1 cut(s)	793
BstAPI	GCANNNNNTGC	2 cut(s)	62, 212
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	4 cut(s)	404, 591, 812, 975
BstEII	GGTNACC	1 cut(s)	725
BstKTI	GATC	3 cut(s)	295, 349, 432
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	3 cut(s)	292, 346, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 212, 604, 829
BstPI	GGTNACC	1 cut(s)	725
BstSFI	CTRYAG	1 cut(s)	818
BstSLI	GKGCMC	1 cut(s)	545
BstV1I	GCAGC	3 cut(s)	532, 607, 610
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	989
BtrI	CACGTC	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	3 cut(s)	178, 266, 442
BveI	ACCTGC	1 cut(s)	852
Cac8I	GCNNGC	1 cut(s)	638
CciI	TCATGA	2 cut(s)	84, 295
Cfr10I	RCCGGY	1 cut(s)	636
Cfr13I	GGNCC	3 cut(s)	658, 987, 1001
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	324, 735, 850
CviAII	CATG	8 cut(s)	77, 85, 139, 296, 583, 615, 929, 1018
CviQI	GTAC	3 cut(s)	324, 735, 850
DdeI	CTNAG	4 cut(s)	404, 591, 812, 975
DpnI	GATC	3 cut(s)	294, 348, 431
DpnII	GATC	3 cut(s)	292, 346, 429
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	730
Eco47I	GGWCC	2 cut(s)	658, 1001
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	959
Eco91I	GGTNACC	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	8 cut(s)	80, 88, 142, 299, 586, 618, 932, 1021
FatI	CATG	8 cut(s)	76, 84, 138, 295, 582, 614, 928, 1017
FauNDI	CATATG	1 cut(s)	642
Fnu4HI	GCNGC	3 cut(s)	521, 596, 599
Fsp4HI	GCNGC	3 cut(s)	521, 596, 599
FspBI	CTAG	4 cut(s)	363, 417, 546, 954
GluI	GCNGC	3 cut(s)	521, 596, 599
GsaI	CCCAGC	1 cut(s)	827
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	989
HapII	CCGG	3 cut(s)	153, 637, 653
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	8 cut(s)	80, 88, 142, 299, 586, 618, 932, 1021
HindIII	AAGCTT	1 cut(s)	940
HinfI	GANTC	5 cut(s)	464, 476, 490, 619, 901
HpaII	CCGG	3 cut(s)	153, 637, 653
HphI	GGTGA	2 cut(s)	138, 424
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	4 cut(s)	351, 388, 624, 751
Hpy188III	TCNNGA	5 cut(s)	19, 85, 283, 296, 908
Hpy8I	GTNNAC	1 cut(s)	543
HpyAV	CCTTC	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	171, 373, 543, 568, 698, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 212, 604, 829
HpyF3I	CTNAG	4 cut(s)	404, 591, 812, 975
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	8 cut(s)	80, 88, 142, 299, 586, 618, 932, 1021
KroI	GCCGGC	1 cut(s)	636
KroNI	GCCGGC	1 cut(s)	638
Kzo9I	GATC	3 cut(s)	292, 346, 429
LmnI	GCTCC	2 cut(s)	606, 955
Lsp1109I	GCAGC	3 cut(s)	532, 607, 610
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	4 cut(s)	363, 417, 546, 954
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	116, 725, 1012
MalI	GATC	3 cut(s)	294, 348, 431
MboI	GATC	3 cut(s)	292, 346, 429
MboII	GAAGA	4 cut(s)	125, 206, 283, 473
MfeI	CAATTG	2 cut(s)	339, 446
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	5 cut(s)	101, 339, 446, 833, 878
MlyI	GAGTC	1 cut(s)	910
MmeI	TCCRAC	3 cut(s)	12, 270, 647
MnlI	CCTC	9 cut(s)	21, 190, 269, 337, 649, 715, 807, 915, 1000
MroNI	GCCGGC	1 cut(s)	636
MroXI	GAANNNNTTC	3 cut(s)	160, 278, 745
MseI	TTAA	4 cut(s)	483, 786, 794, 933
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	2 cut(s)	811, 823
MspCI	CTTAAG	1 cut(s)	793
MspI	CCGG	3 cut(s)	153, 637, 653
MunI	CAATTG	2 cut(s)	339, 446
Mva1269I	GAATGC	1 cut(s)	695
MwoI	GCNNNNNNNGC	4 cut(s)	62, 212, 604, 829
NaeI	GCCGGC	1 cut(s)	638
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	3 cut(s)	292, 346, 429
NgoMIV	GCCGGC	1 cut(s)	636
NlaIII	CATG	8 cut(s)	80, 88, 142, 299, 586, 618, 932, 1021
NlaIV	GGNNCC	1 cut(s)	660
NmuCI	GTSAC	1 cut(s)	116
PagI	TCATGA	2 cut(s)	84, 295
PctI	GAATGC	1 cut(s)	695
PdiI	GCCGGC	1 cut(s)	638
PdmI	GAANNNNTTC	3 cut(s)	160, 278, 745
PfeI	GAWTC	4 cut(s)	464, 476, 490, 619
PkrI	GCNGC	3 cut(s)	522, 597, 600
PleI	GAGTC	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	909
PpuMI	RGGWCCY	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	658
PspEI	GGTNACC	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	823
PspN4I	GGNNCC	1 cut(s)	660
PspPI	GGNCC	3 cut(s)	658, 987, 1001
PspPPI	RGGWCCY	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	3 cut(s)	325, 736, 851
RsaNI	GTAC	3 cut(s)	324, 735, 850
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	4 cut(s)	483, 786, 794, 933
SatI	GCNGC	3 cut(s)	521, 596, 599
Sau3AI	GATC	3 cut(s)	292, 346, 429
Sau96I	GGNCC	3 cut(s)	658, 987, 1001
SchI	GAGTC	1 cut(s)	910
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	818
SinI	GGWCC	2 cut(s)	658, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	3 cut(s)	17, 793, 906
SmoI	CTYRAG	3 cut(s)	17, 793, 906
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	5 cut(s)	101, 339, 446, 833, 878
SsiI	CCGC	1 cut(s)	809
SspMI	CTAG	4 cut(s)	363, 417, 546, 954
StyI	CCWWGG	1 cut(s)	730
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	261
TasI	AATT	5 cut(s)	101, 339, 446, 833, 878
TfiI	GAWTC	4 cut(s)	464, 476, 490, 619
Tru1I	TTAA	4 cut(s)	483, 786, 794, 933
Tru9I	TTAA	4 cut(s)	483, 786, 794, 933
TscAI	CASTG	3 cut(s)	178, 273, 442
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	3 cut(s)	520, 595, 598
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	101, 114, 645
TspRI	CASTG	3 cut(s)	178, 273, 442
Vha464I	CTTAAG	1 cut(s)	793
VneI	GTGCAC	1 cut(s)	541
VpaK11BI	GGWCC	2 cut(s)	658, 1001
XapI	RAATTY	1 cut(s)	878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XmnI	GAANNNNTTC	3 cut(s)	160, 278, 745
XspI	CTAG	4 cut(s)	363, 417, 546, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.