Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007276.1

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

79123 .. 81762

Gene Structure 2640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007276.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgggaagggtaaagctaaagataaagaggttggagaatacaaatgggcgtcaagcaacttatgcgaaaaggaagcatggcatcatgaaaaaggctaatgaattatctatactatgtgacatagacattgtccttcttatgttttccccgactgggaagccttctctatgcagcggaaaacgcagtagcattgaagaggttatagcaaagttttcccaactaactccacaggaaagagctaaaaggttattgcaaacccaactttccgaaataaagaagagattaagctgttggatgaaccctgataagatcaacagtgtagatcagttggggcaaatggaagattcaattagagaatcgcttagccagattcgaacacataaggaaaacttacaaaaacaacaactaatgtcattagaatgcaccagtcagttccaaaatggattgcatatacccttcagcatgagtactgagcaacaactccagcctctgccatggattcctagtaatgaaaaccggcatatcgttttaccagaggacccgaacttgcttcctcatagggatatagaatgttctgcaagttcctccttcggcagttactctggttaccttgggacaggaaaaagtccagagatttccaactctggtcaggaaaacggtattctaaatgacttgagcagaactgcgccactgaggctacagctgggcggacagttttcctcctaccttccatacaatctcaatatgttgaccgatacaaaatttcaacaacccacagaaatgagtcctcaagaaaaccctgtggattatcatgttaatggaagctttgaagctcctagacctgattttttcactacccagcatagctgggcatctacacctggtccctgtgttgttactatgtttgacgagcatttatattcccaggtcagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

311

Amino Acids

35.15

Weight (kDa)

7.65

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 708
AcsI	RAATTY	1 cut(s)	761
AcuI	CTGAAG	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	4 cut(s)	194, 348, 767, 830
AjnI	CCWGG	2 cut(s)	880, 924
AluBI	AGCT	7 cut(s)	16, 239, 288, 703, 825, 833, 867
AluI	AGCT	7 cut(s)	16, 239, 288, 703, 825, 833, 867
AlwNI	CAGNNNCTG	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	538, 884
AsuII	TTCGAA	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	538, 884
BbvI	GCAGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	882, 926
BfaI	CTAG	2 cut(s)	504, 837
BfmI	CTRYAG	1 cut(s)	698
BglI	GCCNNNNNGGC	1 cut(s)	694
BisI	GCNGC	1 cut(s)	172
BlpI	GCTNAGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	173
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	2 cut(s)	882, 926
Bme18I	GGWCC	2 cut(s)	538, 884
BmgT120I	GGNCC	2 cut(s)	538, 884
BmiI	GGNNCC	2 cut(s)	540, 886
BmrFI	CCNGG	2 cut(s)	882, 926
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	90, 881
BmuI	ACTGGG	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	694, 774
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	494, 610, 924
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	2 cut(s)	157, 426
BseBI	CCWGG	2 cut(s)	882, 926
BseDI	CCNNGG	3 cut(s)	494, 610, 924
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	462, 683
BseNI	ACTGG	2 cut(s)	157, 426
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	3 cut(s)	703, 858, 867
BsiSI	CCGG	1 cut(s)	517
BslFI	GGGAC	2 cut(s)	628, 870
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	2 cut(s)	628, 870
BsmI	GAATGC	1 cut(s)	425
Bsp119I	TTCGAA	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	309, 322
Bsp1720I	GCTNAGC	1 cut(s)	362
Bsp19I	CCATGG	1 cut(s)	494
BspACI	CCGC	2 cut(s)	174, 708
BspCNI	CTCAG	2 cut(s)	463, 684
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	540, 886
BspT104I	TTCGAA	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	157, 426
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	494, 610, 924
BssMI	GATC	2 cut(s)	309, 322
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	494, 610
Bst2UI	CCWGG	2 cut(s)	882, 926
Bst4CI	ACNGT	3 cut(s)	317, 659, 714
Bst6I	CTCTTC	2 cut(s)	189, 272
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	362, 471, 692
BstDSI	CCRYGG	1 cut(s)	494
BstEII	GGTNACC	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	2 cut(s)	312, 325
BstMBI	GATC	2 cut(s)	309, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 180, 694
BstNI	CCWGG	2 cut(s)	882, 926
BstPI	GGTNACC	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	880, 924
BstSFI	CTRYAG	1 cut(s)	698
BstV1I	GCAGC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	322, 689
CaiI	CAGNNNCTG	1 cut(s)	490
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	516
Cfr13I	GGNCC	2 cut(s)	538, 884
CseI	GACGC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	880
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	5 cut(s)	77, 85, 463, 495, 812
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	3 cut(s)	362, 471, 692
DpnI	GATC	2 cut(s)	311, 324
DpnII	GATC	2 cut(s)	309, 322
Eam1104I	CTCTTC	2 cut(s)	189, 272
EarI	CTCTTC	2 cut(s)	189, 272
EciI	GGCGGA	1 cut(s)	723
Eco130I	CCWWGG	2 cut(s)	494, 610
Eco47I	GGWCC	2 cut(s)	538, 884
Eco57I	CTGAAG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	880, 924
EcoT14I	CCWWGG	2 cut(s)	494, 610
ErhI	CCWWGG	2 cut(s)	494, 610
FaeI	CATG	5 cut(s)	80, 88, 466, 498, 815
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	2 cut(s)	628, 870
FatI	CATG	5 cut(s)	76, 84, 462, 494, 811
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	2 cut(s)	504, 837
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	1 cut(s)	172
GsaI	CCCAGC	3 cut(s)	707, 862, 871
GsuI	CTGGAG	1 cut(s)	467
HapII	CCGG	1 cut(s)	517
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	688
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	80, 88, 466, 498, 815
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	5 cut(s)	344, 356, 370, 499, 784
HpaII	CCGG	1 cut(s)	517
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	4 cut(s)	85, 629, 650, 791
Hpy8I	GTNNAC	1 cut(s)	750
HpyAV	CCTTC	5 cut(s)	143, 171, 466, 598, 737
HpyCH4III	ACNGT	3 cut(s)	317, 659, 714
HpyCH4V	TGCA	5 cut(s)	171, 253, 423, 448, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 180, 694
HpyF3I	CTNAG	3 cut(s)	362, 471, 692
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	80, 88, 466, 498, 815
HspAI	GCGC	1 cut(s)	686
Kzo9I	GATC	2 cut(s)	309, 322
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	90, 881
MabI	ACCWGGT	1 cut(s)	880
MaeI	CTAG	2 cut(s)	504, 837
MaeIII	GTNAC	4 cut(s)	116, 596, 605, 895
MalI	GATC	2 cut(s)	311, 324
MboI	GATC	2 cut(s)	309, 322
MboII	GAAGA	3 cut(s)	206, 289, 353
MluCI	AATT	3 cut(s)	101, 348, 761
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	3 cut(s)	12, 272, 663
MnlI	CCTC	9 cut(s)	21, 190, 498, 529, 564, 595, 687, 730, 798
MseI	TTAA	3 cut(s)	284, 816, 934
MslI	CAYNNNNRTG	3 cut(s)	418, 779, 816
MspA1I	CMGCKG	2 cut(s)	174, 703
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	882, 926
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	2 cut(s)	882, 926
MwoI	GCNNNNNNNGC	3 cut(s)	62, 180, 694
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	2 cut(s)	309, 322
NlaIII	CATG	5 cut(s)	80, 88, 466, 498, 815
NlaIV	GGNNCC	2 cut(s)	540, 886
NmuCI	GTSAC	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	373
PagI	TCATGA	1 cut(s)	84
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	4 cut(s)	344, 356, 370, 499
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
PpuMI	RGGWCCY	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	880, 924
PspEI	GGTNACC	1 cut(s)	605
PspFI	CCCAGC	3 cut(s)	703, 858, 867
PspGI	CCWGG	2 cut(s)	880, 924
PspN4I	GGNNCC	2 cut(s)	540, 886
PspPI	GGNCC	2 cut(s)	538, 884
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	490
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	703
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	3 cut(s)	418, 779, 816
SaqAI	TTAA	3 cut(s)	284, 816, 934
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	2 cut(s)	309, 322
Sau96I	GGNCC	2 cut(s)	538, 884
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	2 cut(s)	882, 926
SexAI	ACCWGGT	1 cut(s)	880
SfaNI	GCATC	2 cut(s)	90, 881
SfcI	CTRYAG	1 cut(s)	698
SfuI	TTCGAA	1 cut(s)	373
SinI	GGWCC	2 cut(s)	538, 884
SmiMI	CAYNNNNRTG	3 cut(s)	418, 779, 816
SmlI	CTYRAG	2 cut(s)	673, 789
SmoI	CTYRAG	2 cut(s)	673, 789
Sse9I	AATT	3 cut(s)	101, 348, 761
SsiI	CCGC	2 cut(s)	174, 708
SspMI	CTAG	2 cut(s)	504, 837
StyD4I	CCNGG	2 cut(s)	880, 924
StyI	CCWWGG	2 cut(s)	494, 610
TaaI	ACNGT	3 cut(s)	317, 659, 714
TaqI	TCGA	1 cut(s)	373
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	3 cut(s)	101, 348, 761
TatI	WGTACW	1 cut(s)	467
TfiI	GAWTC	4 cut(s)	344, 356, 370, 499
Tru1I	TTAA	3 cut(s)	284, 816, 934
Tru9I	TTAA	3 cut(s)	284, 816, 934
TscAI	CASTG	2 cut(s)	322, 696
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	101, 114, 311, 525
TspRI	CASTG	2 cut(s)	322, 696
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	538, 884
XapI	RAATTY	1 cut(s)	761
XspI	CTAG	2 cut(s)	504, 837
ZrmI	AGTACT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.