Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

49338462 .. 49340496

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTCTCAAGGCGCTTCAGCTCTGCTTGTTTCCCAAGCTTCTCCAAGTCCAAGAATATCCCACATTACCCTTCTTCTGCTCGCCATTGATGACTGAAGGTGAGAATGATGAAGGTGAAGAAAGAAAATGCAGACACAAATGGCCGAAGTTGGTATTGATAGGACACAGAGGAAATGGAATGAACATGCTGCAGTCCTCTGATATCAGAATGAGAGGAATCAGAGAGAACTCAATCCTCTCCTTCAATACTGCTGCTCAATTCCCAATTGATTTTGTTGAGTTTGACGTTCAGGTGACGGAAGATGACTGTCCAGTAATTTTTCATGACAACTTTATCGTCAGTGAGGACAATGGTGTTTTCATTGAGAAGAGAGTTACAGACCTTAAGCTACCAGAATTTCTTTCCTATGGACCCCAGAAACAGCTTGGAGAGGTGAAAATGCCTCTGTTCAGAAAAATGAAAGATGGAACATTTTTTGAGTGGAAGGTGGAAAAGGATGCCCCCCTATGCACATTGCAAGAGGCGTTTGAGAAAGTCGAGCATTCGCTGGGATTTAATATGGAATTGAAGTTTGATGATCACATAGTCTACACAGAGAGACAGCTTAAGCATGTTCTTCAAGTAATCTTGCAGGTGGTAAATGAGTATGCAAAGGGCAGACCAATCTTCTTTTCAACCTTTCAGCCTGATGCTGCTCTTTTGATAAGAAAAATGCAGAGCAGATACCCTGTATATTTTCTCACTGAAGGAGGGTCTCAAAGGTATGCTGATGCTAGAAAGAACTCTTTGGAAGAAGCAGTTAAGGTGTGCTTGGCAGGTGGTTTGCAAGGCATTGTTTCAGAAGTGAGTGCTATCTTGGGAAATCCAGAAGCTGTAACCAGGATTCAAGGGAAAAAACTCCACCTGTTAACTTACGGCCAACTAAATAATATTGTAAATGCTGTGTACATGCAACTTCAGATGGGTGTAGACGGAGTGATTGTTGACCTTGTTCAAGAGATCACAGAGGCAGTTTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

341

Amino Acids

38.86

Weight (kDa)

5.42

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	56 - 332	1.9e-42	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	625, 809
Acc36I	ACCTGC	2 cut(s)	625, 809
AccI	GTMKAC	2 cut(s)	591, 972
AcoI	YGGCCR	2 cut(s)	143, 919
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	3 cut(s)	117, 768, 944
AfaI	GTAC	1 cut(s)	950
AflII	CTTAAG	2 cut(s)	386, 608
AgsI	TTSAA	6 cut(s)	247, 571, 623, 678, 890, 998
AjnI	CCWGG	1 cut(s)	881
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AluBI	AGCT	6 cut(s)	22, 40, 391, 427, 607, 875
AluI	AGCT	6 cut(s)	22, 40, 391, 427, 607, 875
Alw26I	GTCTC	2 cut(s)	595, 762
AlwNI	CAGNNNCTG	1 cut(s)	875
AoxI	GGCC	2 cut(s)	143, 919
ApeKI	GCWGC	3 cut(s)	190, 254, 695
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	4 cut(s)	113, 128, 307, 448
AvaII	GGWCC	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	177, 241, 682
BccI	CCATC	2 cut(s)	461, 958
BceAI	ACGGC	1 cut(s)	934
BciT130I	CCWGG	1 cut(s)	883
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	595, 762
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	17
BfrI	CTTAAG	2 cut(s)	386, 608
BfuAI	ACCTGC	2 cut(s)	625, 809
BisI	GCNGC	3 cut(s)	191, 255, 696
BlsI	GCNGC	3 cut(s)	192, 256, 697
Bme1390I	CCNGG	1 cut(s)	883
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	883
BmsI	GCATC	3 cut(s)	490, 682, 763
BsaI	GGTCTC	1 cut(s)	762
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	883
BseGI	GGATG	1 cut(s)	505
BseMI	GCAATG	1 cut(s)	515
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	177, 241, 682
BseYI	CCCAGC	1 cut(s)	550
BshFI	GGCC	2 cut(s)	145, 921
BsmAI	GTCTC	2 cut(s)	595, 762
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	145, 921
Bso31I	GGTCTC	1 cut(s)	762
Bsp1407I	TGTACA	1 cut(s)	948
Bsp143I	GATC	2 cut(s)	580, 1002
BspANI	GGCC	2 cut(s)	145, 921
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	2 cut(s)	625, 809
BspTI	CTTAAG	2 cut(s)	386, 608
BspTNI	GGTCTC	1 cut(s)	762
BsrDI	GCAATG	1 cut(s)	515
BsrGI	TGTACA	1 cut(s)	948
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	580, 1002
Bst2UI	CCWGG	1 cut(s)	883
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	365
BstAFI	CTTAAG	2 cut(s)	386, 608
BstAUI	TGTACA	1 cut(s)	948
BstC8I	GCNNGC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	505
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	583, 1005
BstMAI	GTCTC	2 cut(s)	595, 762
BstMBI	GATC	2 cut(s)	580, 1002
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	883
BstNSI	RCATGY	3 cut(s)	190, 617, 955
BstSCI	CCNGG	1 cut(s)	881
BstSFI	CTRYAG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	177, 241, 682
BsuRI	GGCC	2 cut(s)	145, 921
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	349, 744
BveI	ACCTGC	2 cut(s)	625, 809
Cac8I	GCNNGC	1 cut(s)	83
CaiI	CAGNNNCTG	1 cut(s)	875
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	949
CviAII	CATG	4 cut(s)	187, 326, 614, 952
CviQI	GTAC	1 cut(s)	949
DpnI	GATC	2 cut(s)	582, 1004
DpnII	GATC	2 cut(s)	580, 1002
EaeI	YGGCCR	2 cut(s)	143, 919
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	3 cut(s)	117, 768, 944
EcoRII	CCWGG	1 cut(s)	881
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	4 cut(s)	190, 329, 617, 955
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	4 cut(s)	186, 325, 613, 951
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	2 cut(s)	591, 972
Fnu4HI	GCNGC	3 cut(s)	191, 255, 696
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	191, 255, 696
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	3 cut(s)	191, 255, 696
GsaI	CCCAGC	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	145, 921
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	190, 329, 617, 955
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	2 cut(s)	912, 988
HindII	GTYRAC	2 cut(s)	912, 988
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	219, 886
HpaI	GTTAAC	1 cut(s)	912
HphI	GGTGA	4 cut(s)	113, 128, 307, 448
Hpy166II	GTNNAC	5 cut(s)	592, 912, 949, 973, 988
Hpy188I	TCNGA	6 cut(s)	202, 209, 224, 455, 844, 963
Hpy188III	TCNNGA	3 cut(s)	326, 869, 998
Hpy8I	GTNNAC	5 cut(s)	592, 912, 949, 973, 988
HpyAV	CCTTC	6 cut(s)	82, 92, 107, 253, 481, 743
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	9 cut(s)	132, 193, 513, 520, 634, 653, 718, 829, 955
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	190, 329, 617, 955
HspAI	GCGC	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	580
KspAI	GTTAAC	1 cut(s)	912
Kzo9I	GATC	2 cut(s)	580, 1002
Lsp1109I	GCAGC	3 cut(s)	177, 241, 682
LweI	GCATC	3 cut(s)	490, 682, 763
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	4 cut(s)	295, 376, 877, 1019
MalI	GATC	2 cut(s)	582, 1004
MboI	GATC	2 cut(s)	580, 1002
MboII	GAAGA	7 cut(s)	67, 131, 314, 382, 611, 661, 806
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	5 cut(s)	260, 267, 318, 398, 566
MseI	TTAA	5 cut(s)	387, 558, 609, 804, 911
MspCI	CTTAAG	2 cut(s)	386, 608
MspR9I	CCNGG	1 cut(s)	883
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	883
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	580, 1002
NlaIII	CATG	4 cut(s)	190, 329, 617, 955
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	295, 1019
NspI	RCATGY	3 cut(s)	190, 617, 955
PagI	TCATGA	1 cut(s)	325
PaqCI	CACCTGC	2 cut(s)	625, 809
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	219, 886
PkrI	GCNGC	3 cut(s)	192, 256, 697
Psp6I	CCWGG	1 cut(s)	881
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	881
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	875
RsaI	GTAC	1 cut(s)	950
RsaNI	GTAC	1 cut(s)	949
SaqAI	TTAA	5 cut(s)	387, 558, 609, 804, 911
SatI	GCNGC	3 cut(s)	191, 255, 696
Sau3AI	GATC	2 cut(s)	580, 1002
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	883
SfaNI	GCATC	3 cut(s)	490, 682, 763
SfcI	CTRYAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	3 cut(s)	8, 386, 608
SmoI	CTYRAG	3 cut(s)	8, 386, 608
Sse9I	AATT	5 cut(s)	260, 267, 318, 398, 566
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	881
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	540
TasI	AATT	5 cut(s)	260, 267, 318, 398, 566
TatI	WGTACW	1 cut(s)	948
TfiI	GAWTC	2 cut(s)	219, 886
Tru1I	TTAA	5 cut(s)	387, 558, 609, 804, 911
Tru9I	TTAA	5 cut(s)	387, 558, 609, 804, 911
TscAI	CASTG	2 cut(s)	349, 751
TseFI	GTSAC	2 cut(s)	295, 1019
TseI	GCWGC	3 cut(s)	190, 254, 695
Tsp45I	GTSAC	2 cut(s)	295, 1019
TspDTI	ATGAA	5 cut(s)	126, 197, 314, 352, 476
TspGWI	ACGGA	2 cut(s)	314, 990
TspRI	CASTG	2 cut(s)	349, 751
Vha464I	CTTAAG	2 cut(s)	386, 608
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	3 cut(s)	190, 617, 955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	2 cut(s)	591, 972
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.