Rh4CG397100
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002890
Physical Location & Seq
Reverse (-)
64662851 .. 64667092
4242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG397100.1

Sequence Viewer

Length: 1077 bp
ATGGGAAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAATACAAATGGGCGTCAAGCAACTTATGCCAAAAGGAAGCATGGCATCATGAAAAAGGCTAATGAATTATCTATACTATGTGACATAGACATTGTCCTTCTTATGTTTTCCCCGACTGGGAAGCCTTCTTTATGCAGCGGAAAACGCAGTAGCATTGAAGAGGTTATAGTAAAGTTTTCCCAACTAACTCCACAGGAAAGAGCTAAAAGGAAACTGGAAAGCCTTGAAGCACTGAAGAAAACATTCAAGAAGTTGGACCATGATGTGAATATACAAGAATTTTTGGGTACGAGTTCTCAAACGGTTGAGGACTTGAGTAACCAATCTAGGTTATTGCAAACCCAACTTTCCGAAATAAAGAAGAGATTAAGCTGTTGGATGAACCCTGATAAGATCAACAGTGTAGATCAGTTGGGGCAAATGGAAGATTCAATTAGAGAATCGCTTAACCAGATTCGAACACATAAGTGCTATGCTATCTATTGGCAGGAAAACTTACAAAAACAACAACTAATGTCATTAGAATGCACCAGTCAGTTCCAAAATGGATTGCATATACCCTTCAGCATGAGTACTGAGCAACAACTCCAGCCTCTGCCATGGATTCCTAGTAATGAAAACCGGCATATCGTTTTACCAGAGGACCCGAACTTGCTTCCTCATAGGGATATAGAATGTTCTGCAAGTTCCTCCTTTGGCAGTTACTCTGGTTACCTTGGGACAGGAAAAAGTCCAGAGATTTCCAACTCTGGTCAGGAAAACGGTATTCTAAATGACTTGAGCAGAACTGCGCCACTGAGGCTACAGCTGGGCGGGCAGTTTTCCTCCTACCTTCCATACAATCTCAATATGTTGACCGATACAAAATTTCAACAACCCACAGAAATGAGTCCTCAAGAAAAACCTGTGGAATATCATGTTAATGGAAGCTTTGAAGCTCCTAGACCTGATTTTTTCGCTACCCAGCATAGCTGGGCATCTACATCTGGTCCCTGTGCTGTTACTATGTTTGACGAGCATTTATATTCCCAGACAAACTAA

Protein Analysis

358

Amino Acids

40.68

Weight (kDa)

7.62

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 54 5.1e-20 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 174, 849
AcsI RAATTY 2 cut(s) 314, 902
AcuI CTGAAG 2 cut(s) 290, 583
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 2 cut(s) 325, 610
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 6 cut(s) 194, 263, 283, 468, 908, 971
AleI CACNNNNGTG 1 cut(s) 502
AluBI AGCT 7 cut(s) 16, 239, 408, 844, 966, 974, 1008
AluI AGCT 7 cut(s) 16, 239, 408, 844, 966, 974, 1008
AlwNI CAGNNNCTG 1 cut(s) 631
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 2 cut(s) 314, 902
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 3 cut(s) 292, 679, 1025
AsuII TTCGAA 1 cut(s) 493
AvaII GGWCC 3 cut(s) 292, 679, 1025
BbvI GCAGC 1 cut(s) 183
BfaI CTAG 3 cut(s) 363, 645, 978
BfmI CTRYAG 1 cut(s) 839
BglI GCCNNNNNGGC 1 cut(s) 835
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
BmcAI AGTACT 1 cut(s) 610
Bme18I GGWCC 3 cut(s) 292, 679, 1025
BmgT120I GGNCC 3 cut(s) 292, 679, 1025
BmiI GGNNCC 2 cut(s) 681, 1027
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 90, 1022
BmuI ACTGGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 3 cut(s) 370, 835, 915
BsaHI GRCGYC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 635, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 657
Bse1I ACTGG 3 cut(s) 157, 255, 567
BseDI CCNNGG 2 cut(s) 635, 751
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 603, 824
BseNI ACTGG 3 cut(s) 157, 255, 567
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 3 cut(s) 844, 999, 1008
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 2 cut(s) 769, 1011
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 2 cut(s) 769, 1011
BsmI GAATGC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 493
Bsp143I GATC 2 cut(s) 429, 442
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 2 cut(s) 174, 849
BspCNI CTCAG 2 cut(s) 604, 825
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 681, 1027
BspT104I TTCGAA 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 657
BsrI ACTGG 3 cut(s) 157, 255, 567
BssAI RCCGGY 1 cut(s) 657
BssECI CCNNGG 2 cut(s) 635, 751
BssMI GATC 2 cut(s) 429, 442
BssNI GRCGYC 1 cut(s) 49
BssT1I CCWWGG 2 cut(s) 635, 751
Bst4CI ACNGT 3 cut(s) 340, 437, 800
Bst6I CTCTTC 2 cut(s) 189, 392
BstACI GRCGYC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 851
BstDEI CTNAG 2 cut(s) 612, 833
BstDSI CCRYGG 1 cut(s) 635
BstEII GGTNACC 1 cut(s) 746
BstF5I GGATG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 2 cut(s) 432, 445
BstMBI GATC 2 cut(s) 429, 442
BstMWI GCNNNNNNNGC 4 cut(s) 62, 180, 835, 850
BstPI GGTNACC 1 cut(s) 746
BstSFI CTRYAG 1 cut(s) 839
BstV1I GCAGC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 266, 442, 830
Cac8I GCNNGC 1 cut(s) 851
CaiI CAGNNNCTG 1 cut(s) 631
CciI TCATGA 1 cut(s) 84
CfoI GCGC 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 657
Cfr13I GGNCC 3 cut(s) 292, 679, 1025
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 324, 609
CviAII CATG 6 cut(s) 77, 85, 296, 604, 636, 953
CviQI GTAC 2 cut(s) 324, 609
DdeI CTNAG 2 cut(s) 612, 833
DpnI GATC 2 cut(s) 431, 444
DpnII GATC 2 cut(s) 429, 442
Eam1104I CTCTTC 2 cut(s) 189, 392
EarI CTCTTC 2 cut(s) 189, 392
Eco130I CCWWGG 2 cut(s) 635, 751
Eco47I GGWCC 3 cut(s) 292, 679, 1025
Eco57I CTGAAG 2 cut(s) 290, 583
Eco91I GGTNACC 1 cut(s) 746
EcoO109I RGGNCCY 1 cut(s) 679
EcoO65I GGTNACC 1 cut(s) 746
EcoT14I CCWWGG 2 cut(s) 635, 751
ErhI CCWWGG 2 cut(s) 635, 751
FaeI CATG 6 cut(s) 80, 88, 299, 607, 639, 956
FaqI GGGAC 2 cut(s) 769, 1011
FatI CATG 6 cut(s) 76, 84, 295, 603, 635, 952
FauI CCCGC 1 cut(s) 842
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 3 cut(s) 363, 645, 978
GlaI GCGC 1 cut(s) 828
GluI GCNGC 1 cut(s) 172
GsaI CCCAGC 3 cut(s) 848, 1003, 1012
GsuI CTGGAG 1 cut(s) 608
HapII CCGG 1 cut(s) 658
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 829
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 6 cut(s) 80, 88, 299, 607, 639, 956
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HindIII AAGCTT 1 cut(s) 964
HinfI GANTC 5 cut(s) 464, 476, 490, 640, 925
HpaII CCGG 1 cut(s) 658
Hpy166II GTNNAC 1 cut(s) 891
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 5 cut(s) 85, 283, 770, 791, 932
Hpy8I GTNNAC 1 cut(s) 891
HpyAV CCTTC 4 cut(s) 143, 171, 607, 878
HpyCH4III ACNGT 3 cut(s) 340, 437, 800
HpyCH4V TGCA 5 cut(s) 171, 373, 564, 589, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 180, 835, 850
HpyF3I CTNAG 2 cut(s) 612, 833
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 6 cut(s) 80, 88, 299, 607, 639, 956
HspAI GCGC 1 cut(s) 827
Kzo9I GATC 2 cut(s) 429, 442
LmnI GCTCC 1 cut(s) 979
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 2 cut(s) 90, 1022
MaeI CTAG 3 cut(s) 363, 645, 978
MaeIII GTNAC 5 cut(s) 116, 353, 737, 746, 1036
MalI GATC 2 cut(s) 431, 444
MboI GATC 2 cut(s) 429, 442
MboII GAAGA 4 cut(s) 206, 283, 409, 473
MluCI AATT 4 cut(s) 101, 314, 468, 902
MlyI GAGTC 1 cut(s) 934
MmeI TCCRAC 4 cut(s) 12, 270, 392, 804
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 3 cut(s) 404, 483, 957
MslI CAYNNNNRTG 4 cut(s) 502, 559, 920, 957
MspA1I CMGCKG 2 cut(s) 174, 844
MspI CCGG 1 cut(s) 658
Mva1269I GAATGC 1 cut(s) 566
MwoI GCNNNNNNNGC 4 cut(s) 62, 180, 835, 850
NcoI CCATGG 1 cut(s) 635
NdeII GATC 2 cut(s) 429, 442
NlaIII CATG 6 cut(s) 80, 88, 299, 607, 639, 956
NlaIV GGNNCC 2 cut(s) 681, 1027
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 493
OliI CACNNNNGTG 1 cut(s) 502
PagI TCATGA 1 cut(s) 84
PctI GAATGC 1 cut(s) 566
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 4 cut(s) 464, 476, 490, 640
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 1 cut(s) 933
PpsI GAGTC 1 cut(s) 933
PpuMI RGGWCCY 1 cut(s) 679
Psp5II RGGWCCY 1 cut(s) 679
PspEI GGTNACC 1 cut(s) 746
PspFI CCCAGC 3 cut(s) 844, 999, 1008
PspN4I GGNNCC 2 cut(s) 681, 1027
PspPI GGNCC 3 cut(s) 292, 679, 1025
PspPPI RGGWCCY 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 844
RsaI GTAC 2 cut(s) 325, 610
RsaNI GTAC 2 cut(s) 324, 609
RseI CAYNNNNRTG 4 cut(s) 502, 559, 920, 957
SaqAI TTAA 3 cut(s) 404, 483, 957
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 2 cut(s) 429, 442
Sau96I GGNCC 3 cut(s) 292, 679, 1025
ScaI AGTACT 1 cut(s) 610
SchI GAGTC 1 cut(s) 934
SfaNI GCATC 2 cut(s) 90, 1022
SfcI CTRYAG 1 cut(s) 839
SfuI TTCGAA 1 cut(s) 493
SinI GGWCC 3 cut(s) 292, 679, 1025
SmiMI CAYNNNNRTG 4 cut(s) 502, 559, 920, 957
SmlI CTYRAG 3 cut(s) 349, 814, 930
SmoI CTYRAG 3 cut(s) 349, 814, 930
Sse9I AATT 4 cut(s) 101, 314, 468, 902
SsiI CCGC 2 cut(s) 174, 849
SspMI CTAG 3 cut(s) 363, 645, 978
StyI CCWWGG 2 cut(s) 635, 751
TaaI ACNGT 3 cut(s) 340, 437, 800
TaqI TCGA 1 cut(s) 493
TaqII GACCGA 1 cut(s) 908
TasI AATT 4 cut(s) 101, 314, 468, 902
TatI WGTACW 1 cut(s) 608
TfiI GAWTC 4 cut(s) 464, 476, 490, 640
Tru1I TTAA 3 cut(s) 404, 483, 957
Tru9I TTAA 3 cut(s) 404, 483, 957
TscAI CASTG 3 cut(s) 273, 442, 837
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 4 cut(s) 101, 114, 431, 666
TspRI CASTG 3 cut(s) 273, 442, 837
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 3 cut(s) 292, 679, 1025
XapI RAATTY 2 cut(s) 314, 902
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 3 cut(s) 363, 645, 978
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.