Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

49341017 .. 49342861

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0319600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCCACGGCCCTCAAGGCTGTTTATGTCTCAGACGTTCCCAATGTCGACCAAGTCTCGGAAATTAATGCTGCATTGGCCCTAATCAAAGCTCCATGGTCAGCGCAAGGTGTGAATGGTCATGATGAAGGCGTAGAAACTAAATGCGGATTCAAATGGCCAAAGTTTGTGGTGATGGGACACAGAGGCAGCGGAATGAACATGTTGCAATCATCTGATGACAGAATGAAATCCATCAAAGAGAACTCAATTCGCTCCTTCAACTCTGCCGCTAAATTCCCTATCGATTACATTGAATTTGATGTTCAAGTGACCAAAGATGACTGTCCAGTCATTTTTCATGACAACTTTATCGCTACCGAGGAGAATGGTGTTCTAGTTGAGAAAAGAGTTACAGACATTACTTTGCCAGAATTTCTTTCATATGGACCCCAGAAAGAACTTGGAAAGGCAGGAATCCCTATGTTTAGAAAAACCAAAGAGGGGACAATTTTTGAGTGGAAGGTGGAGAAGGATGACCCCCTATGCACGTTGCAAGATGTGTTTGAGAAAGTCGACCACTCTATGGGTTTCAATATAGAACTGAAGTTTGATGATCAGTTTGTGTACAATGAGAAACAACACCAACATGTTCTTGAAGTAGTCTTGCAGGTAATAAACAAGTATGCGAAGGATAGACCAATCATGTTTTCGAGCTTTCAGCCTGATATAGTGCTGTTGATCAGAAAAATGCAGAGCACCTATCCAGTATATTTCCTCACCAATGGAGGGTCCGAAATATACAAAGATGTTAGAAGGAACTCTTTGGAAGAGGCAATTAAGGTGTGTATGGCTGGCGGTTTGCAAGGAGTTGTGTCAGAAGCGAGAGCTATCTTGAGAGATCCGAATGCAGTAACCAGGATTAAAGACTCCAACCTTTCCCTTCTAACCTATGGCCAATTAAATAATGTGCCAGAGAAAGTTTACATGCAACATCTGATGGGTGTTGAGGGAGTGATTGTTGATCTGGTAGGAGAGATCACCCAGGCAGTTTCTGATCCAAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

349

Amino Acids

39.24

Weight (kDa)

5.3

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	61 - 338	7.6e-47	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccI	GTMKAC	2 cut(s)	48, 555
AciI	CCGC	4 cut(s)	147, 192, 270, 837
AclWI	GGATC	2 cut(s)	875, 1031
AcoI	YGGCCR	3 cut(s)	3, 158, 934
AcsI	RAATTY	3 cut(s)	275, 296, 413
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	4 cut(s)	58, 483, 565, 768
AflIII	ACRYGT	2 cut(s)	201, 628
AgsI	TTSAA	6 cut(s)	154, 262, 296, 308, 574, 638
AjnI	CCWGG	2 cut(s)	896, 1023
AjuI	GAANNNNNNNTTGG	2 cut(s)	673, 705
AluBI	AGCT	3 cut(s)	92, 696, 869
AluI	AGCT	3 cut(s)	92, 696, 869
Alw21I	GWGCWC	1 cut(s)	740
Alw26I	GTCTC	2 cut(s)	34, 61
AlwI	GGATC	2 cut(s)	875, 1031
AlwNI	CAGNNNCTG	1 cut(s)	1034
AoxI	GGCC	5 cut(s)	3, 9, 78, 158, 934
ApeKI	GCWGC	2 cut(s)	71, 189
ApoI	RAATTY	3 cut(s)	275, 296, 413
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	4 cut(s)	10, 79, 428, 771
AsuHPI	GGTGA	3 cut(s)	184, 751, 1012
AvaII	GGWCC	2 cut(s)	428, 771
BalI	TGGCCA	3 cut(s)	5, 160, 936
Bbv12I	GWGCWC	1 cut(s)	740
BbvI	GCAGC	2 cut(s)	58, 201
BccI	CCATC	3 cut(s)	169, 242, 973
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	898, 1025
BclI	TGATCA	2 cut(s)	595, 720
BcoDI	GTCTC	2 cut(s)	34, 61
BfaI	CTAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	640
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	3 cut(s)	72, 190, 270
BlsI	GCNGC	3 cut(s)	73, 191, 271
Bme1390I	CCNGG	2 cut(s)	898, 1025
Bme18I	GGWCC	2 cut(s)	428, 771
BmgT120I	GGNCC	4 cut(s)	10, 79, 428, 771
BmiI	GGNNCC	2 cut(s)	430, 772
BmrFI	CCNGG	2 cut(s)	898, 1025
BpuEI	CTTGAG	1 cut(s)	895
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	6, 95, 360, 1023
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 483, 565, 768
Bse1I	ACTGG	2 cut(s)	329, 746
BseBI	CCWGG	2 cut(s)	898, 1025
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	4 cut(s)	6, 95, 360, 1023
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	58, 483, 565, 768
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	329, 746
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	58, 201
BshFI	GGCC	5 cut(s)	5, 11, 80, 160, 936
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	740
BslFI	GGGAC	2 cut(s)	192, 499
BslI	CCNNNNNNNGG	4 cut(s)	58, 483, 565, 768
BsmAI	GTCTC	2 cut(s)	34, 61
BsmFI	GGGAC	2 cut(s)	192, 499
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	5 cut(s)	5, 11, 80, 160, 936
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	4 cut(s)	147, 192, 270, 837
BspANI	GGCC	5 cut(s)	5, 11, 80, 160, 936
BspCNI	CTCAG	1 cut(s)	44
BspDI	ATCGAT	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	121, 340
BspLI	GGNNCC	2 cut(s)	430, 772
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	875, 1031
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	329, 746
BssECI	CCNNGG	4 cut(s)	6, 95, 360, 1023
BssMI	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	898, 1025
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	804
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	835
BstDEI	CTNAG	1 cut(s)	31
BstDSI	CCRYGG	2 cut(s)	6, 95
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	6 cut(s)	598, 723, 883, 1006, 1020, 1039
BstMAI	GTCTC	2 cut(s)	34, 61
BstMBI	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 77
BstNI	CCWGG	2 cut(s)	898, 1025
BstNSI	RCATGY	3 cut(s)	205, 632, 970
BstSCI	CCNGG	2 cut(s)	896, 1023
BstV1I	GCAGC	2 cut(s)	58, 201
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	5, 11, 80, 160, 936
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	6, 95
BtsCI	GGATG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	835
CaiI	CAGNNNCTG	1 cut(s)	1034
CciI	TCATGA	2 cut(s)	121, 340
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	4 cut(s)	10, 79, 428, 771
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	607
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	7 cut(s)	96, 122, 202, 341, 629, 685, 967
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	6 cut(s)	597, 722, 882, 1005, 1019, 1038
DpnII	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	3 cut(s)	3, 158, 934
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	428, 771
Eco57I	CTGAAG	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	896, 1023
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	7 cut(s)	99, 125, 205, 344, 632, 688, 970
FalI	AAGNNNNNCTT	2 cut(s)	787, 819
FaqI	GGGAC	2 cut(s)	192, 499
FatI	CATG	7 cut(s)	95, 121, 201, 340, 628, 684, 966
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	2 cut(s)	595, 720
FblI	GTMKAC	2 cut(s)	48, 555
Fnu4HI	GCNGC	3 cut(s)	72, 190, 270
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	72, 190, 270
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	72, 190, 270
HaeIII	GGCC	5 cut(s)	5, 11, 80, 160, 936
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	7 cut(s)	99, 125, 205, 344, 632, 688, 970
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	2 cut(s)	49, 556
HindII	GTYRAC	2 cut(s)	49, 556
HinfI	GANTC	3 cut(s)	150, 456, 908
HphI	GGTGA	3 cut(s)	184, 751, 1012
Hpy166II	GTNNAC	4 cut(s)	49, 556, 607, 964
Hpy188I	TCNGA	9 cut(s)	34, 61, 217, 725, 775, 859, 885, 978, 1036
Hpy188III	TCNNGA	4 cut(s)	122, 341, 635, 874
Hpy8I	GTNNAC	4 cut(s)	49, 556, 607, 964
HpyAV	CCTTC	7 cut(s)	122, 268, 496, 505, 664, 789, 932
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	36, 530
HpyCH4V	TGCA	9 cut(s)	74, 208, 528, 535, 649, 733, 844, 890, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 77
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	2 cut(s)	36, 530
Hsp92II	CATG	7 cut(s)	99, 125, 205, 344, 632, 688, 970
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	2 cut(s)	595, 720
Kzo9I	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
LmnI	GCTCC	2 cut(s)	97, 260
Lsp1109I	GCAGC	2 cut(s)	58, 201
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	36, 530
MaeIII	GTNAC	3 cut(s)	310, 391, 892
MalI	GATC	6 cut(s)	597, 722, 882, 1005, 1019, 1038
MboI	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
MboII	GAAGA	1 cut(s)	821
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	740
MlsI	TGGCCA	3 cut(s)	5, 160, 936
MluCI	AATT	8 cut(s)	63, 249, 275, 296, 413, 489, 816, 938
MluNI	TGGCCA	3 cut(s)	5, 160, 936
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	1 cut(s)	936
MnlI	CCTC	8 cut(s)	23, 179, 355, 475, 761, 767, 805, 982
Mox20I	TGGCCA	3 cut(s)	5, 160, 936
MscI	TGGCCA	3 cut(s)	5, 160, 936
MseI	TTAA	4 cut(s)	66, 819, 903, 941
MslI	CAYNNNNRTG	1 cut(s)	627
Msp20I	TGGCCA	3 cut(s)	5, 160, 936
MspA1I	CMGCKG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	898, 1025
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	2 cut(s)	898, 1025
MwoI	GCNNNNNNNGC	2 cut(s)	17, 77
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
NlaIII	CATG	7 cut(s)	99, 125, 205, 344, 632, 688, 970
NlaIV	GGNNCC	2 cut(s)	430, 772
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	3 cut(s)	205, 632, 970
PagI	TCATGA	2 cut(s)	121, 340
PciI	ACATGT	2 cut(s)	201, 628
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	150, 456
PflFI	GACNNNGTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	73, 191, 271
PleI	GAGTC	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	902
PscI	ACATGT	2 cut(s)	201, 628
PshBI	ATTAAT	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	896, 1023
PspGI	CCWGG	2 cut(s)	896, 1023
PspN4I	GGNNCC	2 cut(s)	430, 772
PspPI	GGNCC	4 cut(s)	10, 79, 428, 771
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	1 cut(s)	880
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	627
SalI	GTCGAC	2 cut(s)	47, 554
SaqAI	TTAA	4 cut(s)	66, 819, 903, 941
SatI	GCNGC	3 cut(s)	72, 190, 270
Sau3AI	GATC	6 cut(s)	595, 720, 880, 1003, 1017, 1036
Sau96I	GGNCC	4 cut(s)	10, 79, 428, 771
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	2 cut(s)	898, 1025
SduI	GDGCHC	1 cut(s)	740
SinI	GGWCC	2 cut(s)	428, 771
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	14, 874
SmoI	CTYRAG	2 cut(s)	14, 874
Sse9I	AATT	8 cut(s)	63, 249, 275, 296, 413, 489, 816, 938
SsiI	CCGC	4 cut(s)	147, 192, 270, 837
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	896, 1023
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	39, 533
TaqI	TCGA	4 cut(s)	48, 285, 555, 692
TasI	AATT	8 cut(s)	63, 249, 275, 296, 413, 489, 816, 938
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	150, 456
Tru1I	TTAA	4 cut(s)	66, 819, 903, 941
Tru9I	TTAA	4 cut(s)	66, 819, 903, 941
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	71, 189
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	141, 212, 242, 329, 411
Tth111I	GACNNNGTC	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	428, 771
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	3 cut(s)	275, 296, 413
XceI	RCATGY	3 cut(s)	205, 632, 970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	2 cut(s)	48, 555
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.