Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

3925869 .. 3929055

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06150.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGAAGGGTAAAGCTAAAGATTAAGAGGTTGGAGAATACAAATGGGCGTCAAGCAACATATGCTAAAAGGAAGAACGGCATCATGAAAAAGGCTAATGAATTATCTATACTTTGCGACATTGACATTGTCCTTCTCATGTTTTCGCCGACTGGAAAACCTTCTTTGTGCAGTGGCAAACGCAGTAGCATCGAAGAGGTTATAGCGAAGTTTGCTCAGCTTACTCCACAGGAAAGAGCTAAAAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACATTCAAGAAGTTGGATCATGATGTTAATATACAAGAATTTTTGGGTACAAGTTCTCAAACGATTGAGGACCTGAGTAACCAGTCTAGCTTATTGCAAGCCCAACTTTCCGAAATAAAAAAGAGACTAAGCTGCTGGACTAGCCCTGATAAGATCAACAGTGTAGAACAGTTGGGCCAAATGGAAGATTCACTTAGAGAATCGCTTAACCAGATTCGAACACATAAGGAAAATTTACAAAAGCAGCAAATTATGTCGTTAGAATGCACTAGTCAGTTCCAAAATGGGTTGCATATACCCTTCAGCATGAATGCTGAGCAACAGTTCCAACCTTTGTCATGGATTCCTACTAATGAAAGCCGACATATGGTTTTACCTGAGGACACGACCTTGCTTCCGCATAGGGACATGGAATGCTCAGCAAGTTCCTCCTTTGGGAGTTATTCCGGTTACCTTGGCACAGGAAAAAGTCCAGAGATTTCAACTTCTGAACAAGAAAACGGTATTCTTAATGACTTGAGCAGAACCGCACCACTGAGGCTACAGCTGGGTGGGCAATTTCCCTATCTGCCGTACAATCTTAATATGATGACTGATACGAAATTCCAACCACCGGCAGAAATGAGTCCTCAAGAAAACCCTGTTGAGTATCATGTTAATGGAAGCTTTGAAGCTCCTAGACCTGAGTTTTACCCTACTCAGCATAGTTGGGCTTCTACATCTGGTCCTTGTGCGGTTACCATGTTTGACGAGCATTTATATTCCCAGATAAACTGCAGAGTCAATTGTTTTCCTCCCCGTTGCGTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

363

Amino Acids

40.96

Weight (kDa)

7.07

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	674, 804, 1010
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	314, 508, 878
AcuI	CTGAAG	2 cut(s)	290, 562
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	325, 851
AfiI	CCNNNNNNNGG	3 cut(s)	643, 711, 889
AgsI	TTSAA	4 cut(s)	263, 283, 759, 947
AhlI	ACTAGT	1 cut(s)	545
AluBI	AGCT	8 cut(s)	16, 220, 239, 366, 408, 823, 942, 950
AluI	AGCT	8 cut(s)	16, 220, 239, 366, 408, 823, 942, 950
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	408, 520
ApoI	RAATTY	3 cut(s)	314, 508, 878
Asp700I	GAANNNNTTC	2 cut(s)	160, 278
AspS9I	GGNCC	3 cut(s)	346, 451, 1001
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	2 cut(s)	346, 1001
AxyI	CCTNAGG	1 cut(s)	654
BbvI	GCAGC	2 cut(s)	395, 532
BceAI	ACGGC	2 cut(s)	94, 832
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcoDI	GTCTC	1 cut(s)	394
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	4 cut(s)	363, 417, 546, 954
BfmI	CTRYAG	2 cut(s)	818, 1051
BisI	GCNGC	2 cut(s)	409, 521
BlpI	GCTNAGC	3 cut(s)	216, 591, 694
BlsI	GCNGC	2 cut(s)	410, 522
Bme18I	GGWCC	2 cut(s)	346, 1001
BmgT120I	GGNCC	3 cut(s)	346, 451, 1001
BmsI	GCATC	2 cut(s)	90, 198
Bpu1102I	GCTNAGC	3 cut(s)	216, 591, 694
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	2 cut(s)	814, 891
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	3 cut(s)	643, 711, 889
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	157, 358
Bse21I	CCTNAGG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	643, 711, 889
BseMII	CTCAG	8 cut(s)	230, 341, 582, 645, 708, 803, 951, 989
BseNI	ACTGG	2 cut(s)	157, 358
BseXI	GCAGC	2 cut(s)	395, 532
BseYI	CCCAGC	1 cut(s)	823
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	723, 890
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	3 cut(s)	643, 711, 889
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	3 cut(s)	545, 592, 695
BsnI	GGCC	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	292, 429
Bsp1720I	GCTNAGC	3 cut(s)	216, 591, 694
BspACI	CCGC	3 cut(s)	674, 804, 1010
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	8 cut(s)	229, 342, 583, 646, 707, 804, 952, 988
BspHI	TCATGA	2 cut(s)	84, 295
BspMAI	CTGCAG	1 cut(s)	1055
BspPI	GGATC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	157, 358
BssAI	RCCGGY	1 cut(s)	889
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	2 cut(s)	292, 429
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	730
Bst4CI	ACNGT	4 cut(s)	437, 447, 600, 779
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	375
BstEII	GGTNACC	2 cut(s)	725, 1012
BstKTI	GATC	2 cut(s)	295, 432
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	292, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 212, 417, 829
BstPI	GGTNACC	2 cut(s)	725, 1012
BstSFI	CTRYAG	2 cut(s)	818, 1051
BstV1I	GCAGC	2 cut(s)	395, 532
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	4 cut(s)	178, 266, 442, 809
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	2 cut(s)	84, 295
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	3 cut(s)	346, 451, 1001
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	324, 850
CviAII	CATG	8 cut(s)	85, 139, 296, 583, 615, 685, 929, 1018
CviQI	GTAC	2 cut(s)	324, 850
DpnI	GATC	2 cut(s)	294, 431
DpnII	GATC	2 cut(s)	292, 429
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	730
Eco47I	GGWCC	2 cut(s)	346, 1001
Eco57I	CTGAAG	2 cut(s)	290, 562
Eco81I	CCTNAGG	1 cut(s)	654
Eco91I	GGTNACC	2 cut(s)	725, 1012
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	2 cut(s)	725, 1012
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 453, 485
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	8 cut(s)	84, 138, 295, 582, 614, 684, 928, 1017
FauNDI	CATATG	2 cut(s)	61, 642
Fnu4HI	GCNGC	2 cut(s)	409, 521
Fsp4HI	GCNGC	2 cut(s)	409, 521
FspBI	CTAG	4 cut(s)	363, 417, 546, 954
GluI	GCNGC	2 cut(s)	409, 521
GsaI	CCCAGC	1 cut(s)	827
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	2 cut(s)	723, 890
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
HindIII	AAGCTT	1 cut(s)	940
HinfI	GANTC	6 cut(s)	464, 476, 490, 619, 901, 1056
HpaII	CCGG	2 cut(s)	723, 890
Hpy188I	TCNGA	2 cut(s)	388, 766
Hpy188III	TCNNGA	5 cut(s)	85, 283, 296, 749, 908
HpyAV	CCTTC	3 cut(s)	143, 171, 586
HpyCH4III	ACNGT	4 cut(s)	437, 447, 600, 779
HpyCH4V	TGCA	5 cut(s)	171, 373, 543, 568, 1053
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 212, 417, 829
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
Kzo9I	GATC	2 cut(s)	292, 429
LmnI	GCTCC	1 cut(s)	955
Lsp1109I	GCAGC	2 cut(s)	395, 532
LweI	GCATC	2 cut(s)	90, 198
MaeI	CTAG	4 cut(s)	363, 417, 546, 954
MaeIII	GTNAC	4 cut(s)	353, 725, 1012, 1081
MalI	GATC	2 cut(s)	294, 431
MboI	GATC	2 cut(s)	292, 429
MboII	GAAGA	4 cut(s)	85, 206, 283, 473
MfeI	CAATTG	1 cut(s)	1060
MluCI	AATT	8 cut(s)	101, 248, 314, 508, 525, 833, 878, 1060
MlyI	GAGTC	2 cut(s)	910, 1065
MmeI	TCCRAC	4 cut(s)	12, 270, 628, 907
MnlI	CCTC	8 cut(s)	21, 190, 337, 649, 715, 807, 915, 1080
MroXI	GAANNNNTTC	2 cut(s)	160, 278
MseI	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	2 cut(s)	723, 890
MunI	CAATTG	1 cut(s)	1060
Mva1269I	GAATGC	3 cut(s)	545, 592, 695
MwoI	GCNNNNNNNGC	4 cut(s)	62, 212, 417, 829
NdeI	CATATG	2 cut(s)	61, 642
NdeII	GATC	2 cut(s)	292, 429
NlaIII	CATG	8 cut(s)	88, 142, 299, 586, 618, 688, 932, 1021
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	2 cut(s)	84, 295
PctI	GAATGC	3 cut(s)	545, 592, 695
PdmI	GAANNNNTTC	2 cut(s)	160, 278
PfeI	GAWTC	4 cut(s)	464, 476, 490, 619
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	410, 522
PleI	GAGTC	2 cut(s)	909, 1064
PpsI	GAGTC	2 cut(s)	909, 1064
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
PspEI	GGTNACC	2 cut(s)	725, 1012
PspFI	CCCAGC	1 cut(s)	823
PspPI	GGNCC	3 cut(s)	346, 451, 1001
PspPPI	RGGWCCY	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	1055
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	2 cut(s)	325, 851
RsaNI	GTAC	2 cut(s)	324, 850
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
SatI	GCNGC	2 cut(s)	409, 521
Sau3AI	GATC	2 cut(s)	292, 429
Sau96I	GGNCC	3 cut(s)	346, 451, 1001
SchI	GAGTC	2 cut(s)	910, 1065
SfaNI	GCATC	2 cut(s)	90, 198
SfcI	CTRYAG	2 cut(s)	818, 1051
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	2 cut(s)	346, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	2 cut(s)	793, 906
SmoI	CTYRAG	2 cut(s)	793, 906
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	8 cut(s)	101, 248, 314, 508, 525, 833, 878, 1060
SsiI	CCGC	3 cut(s)	674, 804, 1010
SspMI	CTAG	4 cut(s)	363, 417, 546, 954
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	4 cut(s)	437, 447, 600, 779
TaqI	TCGA	2 cut(s)	192, 493
TasI	AATT	8 cut(s)	101, 248, 314, 508, 525, 833, 878, 1060
TfiI	GAWTC	4 cut(s)	464, 476, 490, 619
Tru1I	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
Tru9I	TTAA	6 cut(s)	24, 303, 483, 786, 858, 933
TscAI	CASTG	4 cut(s)	178, 273, 442, 816
TseI	GCWGC	2 cut(s)	408, 520
TspDTI	ATGAA	4 cut(s)	101, 114, 599, 645
TspRI	CASTG	4 cut(s)	178, 273, 442, 816
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	346, 1001
XapI	RAATTY	3 cut(s)	314, 508, 878
XmnI	GAANNNNTTC	2 cut(s)	160, 278
XspI	CTAG	4 cut(s)	363, 417, 546, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.