Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

4959976 .. 4964487

Gene Structure 4512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1070700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGTTGGAAAAGCAGAAACCTGTGTGCGATCAGAGGACAGAGTCGGAGGAGGAAGGAGGAGGGCGATGGAGACACAAAATTAAAAGAAATTGCTTTTGGTTAGTTGGTTTGGGAATTTCCGACGCTTCCGATTCTCCCGCTAATTTCGTTTACCCGAATTTTCCGGTCACCCGGTCGTGTTATGCAAAGCTATATGACATTGAACTTTGCTTTTCGATATTTTGGACTGTCAAAGAAGGGGAGTTCAAGCGTAAGATTCGCGGTCAAAAGTGCAGGATGGGAAGGGTAAAGCTAAAGATTAAGAGGTTGGAGAATACAAATGGGCGTCAAGCAACTTATGCTAAAAGGAAGAACGGCATCATGAAAAAGGCTAATGAATTATCTATACTATGCGACATTGACATTGTCCTTCTCATGTTTTCGCCGACTGGAAAACCTTCGTTGTGCAGTGGCAAACGCAGTAGCATCGAAGAGGTTATAGCAAAGTTTGCTCAACTTACTCCACAGGAAAGAGCTAAAAGGAAATTGGAAAGCCTCGAAGCACTGAAGAAAACATTCAAGAAGTTGGATCATGATGTTAATATACAAGAATTTTTGGGTACAAGTTCTCAAACGATTGAGGACCTGAGTAACCAGTCTAGCTTATTGCAAACCCAACTTTCAGAAATAAAAAAGAGACTAAGCTGCTGGACTAGCCTTGATAAGATCAACAGTGTAGAACAGTTGGGGCAAATGGAAGGTTCACTTAGAGAGTCGCTTAACCAGATTCGAACACATAAGGAAAATTTACAAAAGCAGCAAATTATGTCGTTAGAATGCACTAGTCAGTTCCAAAATGGGTTGCATATACCCTTCAGCATGAATACTGAGCAACAGCTCCAACCTTTGTCATGGATTCCGACTAATGAAAGCCGACATATGGATTTACCTGAGGACACGACCTTGCTTCCACATAGGGACATGGAATGCTCAGCAAGTTCCTCCTTTGGGAGTTACTCTGGTTACCTTGGCACAGGAAAAAATCCAGAGATTTCAACTTCTGAACAAGAAAATGGTATTCTTAATGACTTGAGCAGAACCGCACCACTGAGGCTACAGCTGGGTGGGCAATTTCCCTATCTTCCGTACAATCTTAATATGATGACTGATACGAAATTCCAACCACCGGCAGAAATGAGTCCTCAAGAAAACCCTGTTGAGTATCATGTTAATGGAAGCTTTGAAGCTCCTAGACCTGAGTTTTACCCTACTCAGCATAGTTGGGCTTCTACATCTGGTCCTTGTGCGGTTACCATGTTTGACGAGCATTTATTTTCCCAGCAGACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

444

Amino Acids

50.5

Weight (kDa)

8.19

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	102 - 146	2.5e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	4 cut(s)	138, 261, 1080, 1286
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	5 cut(s)	114, 157, 590, 784, 1154
AcuI	CTGAAG	2 cut(s)	566, 838
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	2 cut(s)	601, 1127
AfiI	CCNNNNNNNGG	3 cut(s)	919, 987, 1165
AgsI	TTSAA	5 cut(s)	203, 247, 559, 1035, 1223
AhlI	ACTAGT	1 cut(s)	821
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AluBI	AGCT	9 cut(s)	190, 292, 515, 642, 684, 877, 1099, 1218, 1226
AluI	AGCT	9 cut(s)	190, 292, 515, 642, 684, 877, 1099, 1218, 1226
Alw26I	GTCTC	2 cut(s)	64, 670
AlwI	GGATC	1 cut(s)	576
ApeKI	GCWGC	2 cut(s)	684, 796
ApoI	RAATTY	5 cut(s)	114, 157, 590, 784, 1154
Asp700I	GAANNNNTTC	2 cut(s)	436, 554
AspS9I	GGNCC	2 cut(s)	622, 1277
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	160
AsuII	TTCGAA	1 cut(s)	769
AvaII	GGWCC	2 cut(s)	622, 1277
AxyI	CCTNAGG	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	671, 808
BccI	CCATC	2 cut(s)	60, 271
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	64, 670
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	4 cut(s)	639, 693, 822, 1230
BfmI	CTRYAG	1 cut(s)	1094
BisI	GCNGC	2 cut(s)	685, 797
BlpI	GCTNAGC	1 cut(s)	970
BlsI	GCNGC	2 cut(s)	686, 798
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	2 cut(s)	622, 1277
BmgT120I	GGNCC	2 cut(s)	622, 1277
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	366, 474
Bpu1102I	GCTNAGC	1 cut(s)	970
Bpu14I	TTCGAA	1 cut(s)	769
BpuEI	CTTGAG	2 cut(s)	1090, 1167
BpuMI	CCSGG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	1006
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	3 cut(s)	919, 987, 1165
Bse118I	RCCGGY	1 cut(s)	1165
Bse1I	ACTGG	2 cut(s)	433, 634
Bse21I	CCTNAGG	1 cut(s)	930
BseDI	CCNNGG	1 cut(s)	1006
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	3 cut(s)	919, 987, 1165
BseMII	CTCAG	7 cut(s)	617, 858, 921, 984, 1079, 1227, 1265
BseNI	ACTGG	2 cut(s)	433, 634
BseRI	GAGGAG	2 cut(s)	62, 72
BseXI	GCAGC	2 cut(s)	671, 808
BseYI	CCCAGC	2 cut(s)	1099, 1317
BsgI	GTGCAG	2 cut(s)	292, 466
Bsh1236I	CGCG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	164, 172, 1166
BslFI	GGGAC	1 cut(s)	971
BslI	CCNNNNNNNGG	3 cut(s)	919, 987, 1165
BsmAI	GTCTC	2 cut(s)	64, 670
BsmFI	GGGAC	1 cut(s)	971
BsmI	GAATGC	2 cut(s)	821, 971
Bsp119I	TTCGAA	1 cut(s)	769
Bsp143I	GATC	3 cut(s)	28, 568, 705
Bsp1720I	GCTNAGC	1 cut(s)	970
BspACI	CCGC	4 cut(s)	138, 261, 1080, 1286
BspCNI	CTCAG	7 cut(s)	618, 859, 922, 983, 1080, 1228, 1264
BspFNI	CGCG	1 cut(s)	261
BspHI	TCATGA	2 cut(s)	360, 571
BspPI	GGATC	1 cut(s)	576
BspT104I	TTCGAA	1 cut(s)	769
BsrFI	RCCGGY	1 cut(s)	1165
BsrI	ACTGG	2 cut(s)	433, 634
BssAI	RCCGGY	1 cut(s)	1165
BssECI	CCNNGG	1 cut(s)	1006
BssMI	GATC	3 cut(s)	28, 568, 705
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	1006
Bst4CI	ACNGT	3 cut(s)	229, 713, 723
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	325
BstAPI	GCANNNNNTGC	2 cut(s)	338, 488
BstBI	TTCGAA	1 cut(s)	769
BstDEI	CTNAG	9 cut(s)	626, 680, 746, 867, 930, 970, 1088, 1236, 1251
BstEII	GGTNACC	3 cut(s)	166, 1001, 1288
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	3 cut(s)	31, 571, 708
BstMAI	GTCTC	2 cut(s)	64, 670
BstMBI	GATC	3 cut(s)	28, 568, 705
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 488, 693, 1105
BstPI	GGTNACC	3 cut(s)	166, 1001, 1288
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	1094
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	671, 808
Bsu36I	CCTNAGG	1 cut(s)	930
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	4 cut(s)	454, 542, 718, 1085
CciI	TCATGA	2 cut(s)	360, 571
Cfr10I	RCCGGY	1 cut(s)	1165
Cfr13I	GGNCC	2 cut(s)	622, 1277
CseI	GACGC	2 cut(s)	131, 314
Csp6I	GTAC	2 cut(s)	600, 1126
CviAII	CATG	8 cut(s)	361, 415, 572, 859, 891, 961, 1205, 1294
CviQI	GTAC	2 cut(s)	600, 1126
DdeI	CTNAG	9 cut(s)	626, 680, 746, 867, 930, 970, 1088, 1236, 1251
DpnI	GATC	3 cut(s)	30, 570, 707
DpnII	GATC	3 cut(s)	28, 568, 705
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	1006
Eco47I	GGWCC	2 cut(s)	622, 1277
Eco57I	CTGAAG	2 cut(s)	566, 838
Eco81I	CCTNAGG	1 cut(s)	930
Eco91I	GGTNACC	3 cut(s)	166, 1001, 1288
EcoO109I	RGGNCCY	1 cut(s)	622
EcoO65I	GGTNACC	3 cut(s)	166, 1001, 1288
EcoT14I	CCWWGG	1 cut(s)	1006
ErhI	CCWWGG	1 cut(s)	1006
FaeI	CATG	8 cut(s)	364, 418, 575, 862, 894, 964, 1208, 1297
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	1 cut(s)	971
FatI	CATG	8 cut(s)	360, 414, 571, 858, 890, 960, 1204, 1293
FauI	CCCGC	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	918
Fnu4HI	GCNGC	2 cut(s)	685, 797
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	685, 797
FspBI	CTAG	4 cut(s)	639, 693, 822, 1230
GluI	GCNGC	2 cut(s)	685, 797
GsaI	CCCAGC	2 cut(s)	1103, 1321
HapII	CCGG	3 cut(s)	164, 172, 1166
HgaI	GACGC	2 cut(s)	131, 314
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	8 cut(s)	364, 418, 575, 862, 894, 964, 1208, 1297
HindIII	AAGCTT	1 cut(s)	1216
HinfI	GANTC	7 cut(s)	41, 131, 256, 752, 766, 895, 1177
HpaII	CCGG	3 cut(s)	164, 172, 1166
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	151, 743
Hpy188I	TCNGA	7 cut(s)	33, 46, 121, 130, 664, 900, 1042
Hpy188III	TCNNGA	5 cut(s)	361, 559, 572, 1025, 1184
Hpy8I	GTNNAC	2 cut(s)	151, 743
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	7 cut(s)	47, 230, 276, 419, 447, 731, 862
HpyCH4III	ACNGT	3 cut(s)	229, 713, 723
HpyCH4V	TGCA	6 cut(s)	185, 273, 447, 649, 819, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 488, 693, 1105
HpyF3I	CTNAG	9 cut(s)	626, 680, 746, 867, 930, 970, 1088, 1236, 1251
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	8 cut(s)	364, 418, 575, 862, 894, 964, 1208, 1297
Kzo9I	GATC	3 cut(s)	28, 568, 705
LmnI	GCTCC	2 cut(s)	882, 1231
Lsp1109I	GCAGC	2 cut(s)	671, 808
LweI	GCATC	2 cut(s)	366, 474
MaeI	CTAG	4 cut(s)	639, 693, 822, 1230
MaeIII	GTNAC	5 cut(s)	166, 629, 992, 1001, 1288
MalI	GATC	3 cut(s)	30, 570, 707
MboI	GATC	3 cut(s)	28, 568, 705
MboII	GAAGA	4 cut(s)	361, 482, 559, 1112
MlyI	GAGTC	3 cut(s)	50, 761, 1186
MmeI	TCCRAC	7 cut(s)	24, 144, 288, 546, 904, 923, 1183
MroXI	GAANNNNTTC	2 cut(s)	436, 554
MseI	TTAA	7 cut(s)	81, 300, 579, 759, 1062, 1134, 1209
MslI	CAYNNNNRTG	1 cut(s)	1209
MspA1I	CMGCKG	1 cut(s)	1099
MspI	CCGG	3 cut(s)	164, 172, 1166
MspR9I	CCNGG	1 cut(s)	172
Mva1269I	GAATGC	2 cut(s)	821, 971
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	338, 488, 693, 1105
NciI	CCSGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	3 cut(s)	28, 568, 705
NlaIII	CATG	8 cut(s)	364, 418, 575, 862, 894, 964, 1208, 1297
NmuCI	GTSAC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	769
PagI	TCATGA	2 cut(s)	360, 571
PctI	GAATGC	2 cut(s)	821, 971
PdmI	GAANNNNTTC	2 cut(s)	436, 554
PfeI	GAWTC	4 cut(s)	131, 256, 766, 895
PflFI	GACNNNGTC	2 cut(s)	40, 404
PkrI	GCNGC	2 cut(s)	686, 798
PleI	GAGTC	3 cut(s)	49, 760, 1185
PpsI	GAGTC	3 cut(s)	49, 760, 1185
PpuMI	RGGWCCY	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	622
PspEI	GGTNACC	3 cut(s)	166, 1001, 1288
PspFI	CCCAGC	2 cut(s)	1099, 1317
PspPI	GGNCC	2 cut(s)	622, 1277
PspPPI	RGGWCCY	1 cut(s)	622
PsyI	GACNNNGTC	2 cut(s)	40, 404
PvuII	CAGCTG	1 cut(s)	1099
RsaI	GTAC	2 cut(s)	601, 1127
RsaNI	GTAC	2 cut(s)	600, 1126
RseI	CAYNNNNRTG	1 cut(s)	1209
SaqAI	TTAA	7 cut(s)	81, 300, 579, 759, 1062, 1134, 1209
SatI	GCNGC	2 cut(s)	685, 797
Sau3AI	GATC	3 cut(s)	28, 568, 705
Sau96I	GGNCC	2 cut(s)	622, 1277
SchI	GAGTC	3 cut(s)	50, 761, 1186
ScrFI	CCNGG	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	366, 474
SfcI	CTRYAG	1 cut(s)	1094
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	2 cut(s)	622, 1277
SmiMI	CAYNNNNRTG	1 cut(s)	1209
SmlI	CTYRAG	2 cut(s)	1069, 1182
SmoI	CTYRAG	2 cut(s)	1069, 1182
SpeI	ACTAGT	1 cut(s)	821
SsiI	CCGC	4 cut(s)	138, 261, 1080, 1286
SspMI	CTAG	4 cut(s)	639, 693, 822, 1230
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	1006
TaaI	ACNGT	3 cut(s)	229, 713, 723
TaqI	TCGA	4 cut(s)	215, 468, 537, 769
TfiI	GAWTC	4 cut(s)	131, 256, 766, 895
Tru1I	TTAA	7 cut(s)	81, 300, 579, 759, 1062, 1134, 1209
Tru9I	TTAA	7 cut(s)	81, 300, 579, 759, 1062, 1134, 1209
TscAI	CASTG	4 cut(s)	454, 549, 718, 1092
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	684, 796
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	377, 390, 875, 921
TspGWI	ACGGA	1 cut(s)	1113
TspRI	CASTG	4 cut(s)	454, 549, 718, 1092
Tth111I	GACNNNGTC	2 cut(s)	40, 404
VpaK11BI	GGWCC	2 cut(s)	622, 1277
XapI	RAATTY	5 cut(s)	114, 157, 590, 784, 1154
XmnI	GAANNNNTTC	2 cut(s)	436, 554
XspI	CTAG	4 cut(s)	639, 693, 822, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.