Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Forward (+)

901061 .. 904149

Gene Structure 3089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03060.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGAAGGGTAAAATTGAAGATAAAGAAGTTAGAGAACACAAATGGACGCCAATCTACATTTGCTAAAAGGAAAAATGGGATCTTGAAAAAGGCTAATGAGCTATCTATTCTTTGTGACATTGATATTGTTCTTCTTATGTTCTCTCCTACTGGCAAGGCTGCAATATGTTGCGGTACACGAAGTAGCATGGAAGAGGTGATTGCTAAGTTTTCTCAAGTAACACCGCAGGAAAGAACGAAAAGGAAGTTCGAGAGTCTTGAAAACTTGAAGAAAACTTTCCAAAAGTTGGATCACGATGTAAATATACGCGAATTTATAGCCTCAAGTAATTCAACAGTAGAGGACTTGAGTACTCAAGCAAGGATTCTGCAGGCTCGGATTTCTGAGATACATGGAAGATTAAGTTATTGGACGGAACCAGATAAGATTAACAATGTTGAACACTTGGGACAGCTCGAAATTTCGATTAGGCAATCCCTTGATCAATTGCGTGCACACAAGGAACATTTTGGGCAGCAGCAACAGGCAATGCAAATAGAAAACGCAAACTTTGTTAAGGATTGGTCAACATGCTCGATGCAAGATGGGATTCAGATTCCTTTAGAACAACAGCTTCAATCTATGTCATGGATTCTTAATAGCAACACCACCAACATTGTCACCGAGGAACACAATTCAATCCCGCAGAGGGAAGTCGAGTGCTCAGCGAGTTCTTCATTCGGGAGCTATCCAGGCTACTTTGGAACAGGGAAATCTCCTGAAATGACAATTCCGGGTCAAGAAACAAGCTTTCTTGATGAACTAAACACCGGACAGCTGAAACAGGACACAAGCTCGCAGCAGCAGTTCACTAATAATAATAATATCACAGCATACAATCCCAATCTTCACAATGATATGAATCATCACCAAACGTTGCCTCCTCCTCCTCTTCCTCTTACTCTTCCGCATGCTCAGGTGTATATTCCAATGAATCAGAGAGAGTATCATATGAATGGATTCTTTGAAGCACCACCACCTGATTCTTCTGCTTACAACGACAACACCAACCAAACCAGGTTTGGTTCTAGCAGCAGCTCCTTGCCTTGCTCAATCTCAATGTTCGACGAATACTTGTTTTCCCAGATGCAGCAGCCGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

381

Amino Acids

43.2

Weight (kDa)

6.02

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccII	CGCG	1 cut(s)	312
AciI	CCGC	4 cut(s)	174, 227, 686, 950
AclI	AACGTT	1 cut(s)	917
AclWI	GGATC	2 cut(s)	89, 300
AcsI	RAATTY	2 cut(s)	314, 462
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	178, 355
AfiI	CCNNNNNNNGG	2 cut(s)	289, 691
AgsI	TTSAA	9 cut(s)	19, 88, 263, 271, 336, 443, 620, 681, 1010
AjnI	CCWGG	2 cut(s)	733, 1058
AluBI	AGCT	8 cut(s)	103, 457, 616, 729, 792, 820, 837, 1080
AluI	AGCT	8 cut(s)	103, 457, 616, 729, 792, 820, 837, 1080
Alw21I	GWGCWC	2 cut(s)	499, 707
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	89, 300
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	9 cut(s)	161, 517, 520, 841, 844, 1074, 1077, 1132, 1135
ApoI	RAATTY	2 cut(s)	314, 462
Asp700I	GAANNNNTTC	2 cut(s)	278, 1001
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	3 cut(s)	211, 655, 902
BaeGI	GKGCMC	1 cut(s)	499
Bbv12I	GWGCWC	2 cut(s)	499, 707
BbvI	GCAGC	7 cut(s)	148, 529, 532, 853, 856, 1086, 1089
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	735, 1060
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	777
BfaI	CTAG	1 cut(s)	1071
BfmI	CTRYAG	1 cut(s)	371
BisI	GCNGC	9 cut(s)	162, 518, 521, 842, 845, 1075, 1078, 1133, 1136
BlpI	GCTNAGC	1 cut(s)	706
BlsI	GCNGC	9 cut(s)	163, 519, 522, 843, 846, 1076, 1079, 1134, 1137
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	735, 777, 1060
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	3 cut(s)	735, 777, 1060
BmsI	GCATC	2 cut(s)	570, 1119
Bpu10I	CCTNAGC	1 cut(s)	957
Bpu1102I	GCTNAGC	1 cut(s)	706
BpuEI	CTTGAG	4 cut(s)	201, 310, 342, 370
BpuMI	CCSGG	1 cut(s)	777
BsaBI	GATNNNNATC	1 cut(s)	903
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	666
BsaWI	WCCGGW	1 cut(s)	812
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 691
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	903
BseBI	CCWGG	2 cut(s)	735, 1060
BseDI	CCNNGG	1 cut(s)	666
BseJI	GATNNNNATC	1 cut(s)	903
BseLI	CCNNNNNNNGG	2 cut(s)	289, 691
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	378, 720, 971
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	3 cut(s)	915, 918, 921
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	7 cut(s)	148, 529, 532, 853, 856, 1086, 1089
Bsh1236I	CGCG	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	499, 707
BsiSI	CCGG	2 cut(s)	776, 813
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	289, 691
BsmFI	GGGAC	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	499, 707
Bsp143I	GATC	3 cut(s)	81, 292, 484
Bsp1720I	GCTNAGC	1 cut(s)	706
BspACI	CCGC	4 cut(s)	174, 227, 686, 950
BspCNI	CTCAG	3 cut(s)	379, 719, 970
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	375
BspPI	GGATC	2 cut(s)	89, 300
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	3 cut(s)	81, 292, 484
BssNI	GRCGYC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	735, 1060
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	3 cut(s)	189, 939, 951
BstACI	GRCGYC	1 cut(s)	49
BstC8I	GCNNGC	4 cut(s)	375, 495, 839, 954
BstDEI	CTNAG	4 cut(s)	207, 387, 706, 957
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	3 cut(s)	84, 295, 487
BstMBI	GATC	3 cut(s)	81, 292, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	735
BstNI	CCWGG	2 cut(s)	735, 1060
BstNSI	RCATGY	2 cut(s)	576, 956
BstSCI	CCNGG	3 cut(s)	733, 775, 1058
BstSFI	CTRYAG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	499
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	7 cut(s)	148, 529, 532, 853, 856, 1086, 1089
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
Cac8I	GCNNGC	4 cut(s)	375, 495, 839, 954
CseI	GACGC	1 cut(s)	57
CsiI	ACCWGGT	1 cut(s)	1058
Csp6I	GTAC	2 cut(s)	177, 354
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	5 cut(s)	190, 395, 573, 630, 953
CviQI	GTAC	2 cut(s)	177, 354
DdeI	CTNAG	4 cut(s)	207, 387, 706, 957
DpnI	GATC	3 cut(s)	83, 294, 486
DpnII	GATC	3 cut(s)	81, 292, 484
Eam1104I	CTCTTC	3 cut(s)	189, 939, 951
EarI	CTCTTC	3 cut(s)	189, 939, 951
EcoRII	CCWGG	2 cut(s)	733, 1058
FaeI	CATG	5 cut(s)	193, 398, 576, 633, 956
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	5 cut(s)	189, 394, 572, 629, 952
FauI	CCCGC	1 cut(s)	693
FauNDI	CATATG	1 cut(s)	993
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	9 cut(s)	162, 518, 521, 842, 845, 1075, 1078, 1133, 1136
Fsp4HI	GCNGC	9 cut(s)	162, 518, 521, 842, 845, 1075, 1078, 1133, 1136
FspBI	CTAG	1 cut(s)	1071
GluI	GCNGC	9 cut(s)	162, 518, 521, 842, 845, 1075, 1078, 1133, 1136
HapII	CCGG	2 cut(s)	776, 813
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	193, 398, 576, 633, 956
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	790
HinfI	GANTC	9 cut(s)	256, 367, 592, 598, 634, 904, 976, 1002, 1025
HpaII	CCGG	2 cut(s)	776, 813
HphI	GGTGA	3 cut(s)	211, 655, 902
Hpy166II	GTNNAC	4 cut(s)	179, 497, 570, 852
Hpy188I	TCNGA	4 cut(s)	381, 388, 597, 981
Hpy188III	TCNNGA	8 cut(s)	85, 253, 260, 296, 724, 761, 782, 797
Hpy8I	GTNNAC	4 cut(s)	179, 497, 570, 852
Hpy99I	CGWCG	1 cut(s)	1112
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	917
HpyCH4V	TGCA	6 cut(s)	164, 373, 497, 535, 583, 1132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	735
HpyF3I	CTNAG	4 cut(s)	207, 387, 706, 957
HpySE526I	ACGT	1 cut(s)	917
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	193, 398, 576, 633, 956
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	81, 292, 484
LmnI	GCTCC	2 cut(s)	726, 1085
Lsp1109I	GCAGC	7 cut(s)	148, 529, 532, 853, 856, 1086, 1089
LweI	GCATC	2 cut(s)	570, 1119
MabI	ACCWGGT	1 cut(s)	1058
MaeI	CTAG	1 cut(s)	1071
MaeII	ACGT	1 cut(s)	917
MaeIII	GTNAC	3 cut(s)	116, 220, 661
MalI	GATC	3 cut(s)	83, 294, 486
MboI	GATC	3 cut(s)	81, 292, 484
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	499, 707
MluCI	AATT	7 cut(s)	14, 314, 331, 462, 488, 676, 771
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	270
MroXI	GAANNNNTTC	2 cut(s)	278, 1001
MseI	TTAA	4 cut(s)	404, 432, 558, 639
MslI	CAYNNNNRTG	1 cut(s)	996
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	2 cut(s)	776, 813
MspR9I	CCNGG	3 cut(s)	735, 777, 1060
MunI	CAATTG	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	735, 1060
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	735
NciI	CCSGG	1 cut(s)	777
NdeI	CATATG	1 cut(s)	993
NdeII	GATC	3 cut(s)	81, 292, 484
NlaIII	CATG	5 cut(s)	193, 398, 576, 633, 956
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	116, 661
NspI	RCATGY	2 cut(s)	576, 956
PaeI	GCATGC	1 cut(s)	956
PdmI	GAANNNNTTC	2 cut(s)	278, 1001
PfeI	GAWTC	8 cut(s)	367, 592, 598, 634, 904, 976, 1002, 1025
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	9 cut(s)	163, 519, 522, 843, 846, 1076, 1079, 1134, 1137
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Psp1406I	AACGTT	1 cut(s)	917
Psp6I	CCWGG	2 cut(s)	733, 1058
PspGI	CCWGG	2 cut(s)	733, 1058
PspN4I	GGNNCC	1 cut(s)	420
PstI	CTGCAG	1 cut(s)	375
PsuI	RGATCY	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	2 cut(s)	178, 355
RsaNI	GTAC	2 cut(s)	177, 354
RseI	CAYNNNNRTG	1 cut(s)	996
SaqAI	TTAA	4 cut(s)	404, 432, 558, 639
SatI	GCNGC	9 cut(s)	162, 518, 521, 842, 845, 1075, 1078, 1133, 1136
Sau3AI	GATC	3 cut(s)	81, 292, 484
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	3 cut(s)	735, 777, 1060
SduI	GDGCHC	2 cut(s)	499, 707
SexAI	ACCWGGT	1 cut(s)	1058
SfaNI	GCATC	2 cut(s)	570, 1119
SfcI	CTRYAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	996
SmlI	CTYRAG	4 cut(s)	216, 325, 349, 357
SmoI	CTYRAG	4 cut(s)	216, 325, 349, 357
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	7 cut(s)	14, 314, 331, 462, 488, 676, 771
SsiI	CCGC	4 cut(s)	174, 227, 686, 950
SspMI	CTAG	1 cut(s)	1071
StyD4I	CCNGG	3 cut(s)	733, 775, 1058
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	920
TaqI	TCGA	6 cut(s)	252, 459, 467, 578, 699, 1107
TasI	AATT	7 cut(s)	14, 314, 331, 462, 488, 676, 771
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	8 cut(s)	367, 592, 598, 634, 904, 976, 1002, 1025
Tru1I	TTAA	4 cut(s)	404, 432, 558, 639
Tru9I	TTAA	4 cut(s)	404, 432, 558, 639
TseFI	GTSAC	2 cut(s)	116, 661
TseI	GCWGC	9 cut(s)	161, 517, 520, 841, 844, 1074, 1077, 1132, 1135
Tsp45I	GTSAC	2 cut(s)	116, 661
TspDTI	ATGAA	5 cut(s)	708, 816, 917, 989, 1010
TspGWI	ACGGA	1 cut(s)	431
Van91I	CCANNNNNTGG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	495
XapI	RAATTY	2 cut(s)	314, 462
XceI	RCATGY	2 cut(s)	576, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1061
XmnI	GAANNNNTTC	2 cut(s)	278, 1001
XspI	CTAG	1 cut(s)	1071
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.