Rorug04G0319700
MADS Family

MADS-box transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
49348151 .. 49349409
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0319700.1

Sequence Viewer

Length: 828 bp
ATGGAGAAGTACCAAACCCTAGAAATTGATCAGAAAAACCCAAACTCCCCAGTCTTCTACCTCTACCTGAATTGCCCAAAGCACCGCAACGCCCTATCACGTGACTTCTTCACCGAATTCCCCAAAGCCCTCTCCTCTCTCGACCAAAACCCCAACGTCAACGTCATCGTCCTCACCGGCGCCGGAGACCACTTCTGCGCCGGAATCGACCTCAACAACCTATCCTCGATCGCCGGGAGTTCCGTCTCCGGAGACCGGGGCCGCGACGGAGAGAGGCTCCGGCGAGCGATCAAGCTCATGCAGGACGCCATCACCGCGATCGAGCGGTGCCGGAAGCCGGTGATAGCCGCCATCCAAGGCGCGTGCATCGGCGGCGGGATCGATATCGTCACCGCCTGTGACATACGGTACTGCAGCAAGGACGCGTTCTTCTCGGTCAAAGAGGTCGACCTGGCGATCACGGCCGACCTCGGAACGCTTCAGCGGCTGCCCAGCATAGTCGGGTACGGCCACGCGCTTGAGTTGGCGTTAACGGGTCGGCGGTTCTCGGGTCAGGAGGCCAAGGAGCTGGGCCTGGTCTCTGGAGTGTTCGGGTCGAAGCAGGAGCTAGAGGGCAGCGTACGACTCGTCGCCGAGGGAATGGCTGCAAAGTCGCCGCTGGCGGTGACGGGGACGAAAGCGGTGCTGCAGAGGAGCAGGGAGATGAGTGTGGAGCAGGGATTGGATTACGTCGCCACGTGGAATTCGGCAATGCTGTTATCCGACGATTTGACGGAGGCGGTTTCGGCTCACATGCAGAAAAGGAAGCCGGTGTTTGCTAAGCTCTGA

Protein Analysis

275

Amino Acids

29.78

Weight (kDa)

7.6

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 16 - 273 1.5e-49 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 21 - 200 1.4e-25 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 327
AccBSI CCGCTC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 447
AccII CGCG 5 cut(s) 264, 317, 362, 425, 515
AccIII TCCGGA 1 cut(s) 248
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 2 cut(s) 462, 508
AcsI RAATTY 2 cut(s) 116, 742
AcuI CTGAAG 1 cut(s) 464
AcvI CACGTG 2 cut(s) 101, 738
AcyI GRCGYC 2 cut(s) 180, 306
AfaI GTAC 4 cut(s) 11, 410, 506, 621
AfiI CCNNNNNNNGG 2 cut(s) 255, 337
AflIII ACRYGT 1 cut(s) 423
AjnI CCWGG 2 cut(s) 450, 573
AluBI AGCT 4 cut(s) 295, 568, 607, 823
AluI AGCT 4 cut(s) 295, 568, 607, 823
Alw26I GTCTC 4 cut(s) 180, 246, 250, 583
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 547
Aor13HI TCCGGA 1 cut(s) 248
AoxI GGCC 5 cut(s) 259, 462, 508, 558, 571
ApeKI GCWGC 5 cut(s) 414, 487, 615, 644, 685
ApoI RAATTY 2 cut(s) 116, 742
AspLEI GCGC 4 cut(s) 182, 200, 362, 517
AspS9I GGNCC 2 cut(s) 259, 571
AsuC2I CCSGG 2 cut(s) 235, 257
AsuHPI GGTGA 6 cut(s) 103, 166, 304, 352, 382, 676
AvaI CYCGRG 1 cut(s) 547
BanI GGYRCC 2 cut(s) 179, 327
BbrPI CACGTG 2 cut(s) 101, 738
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 5 cut(s) 426, 474, 627, 631, 672
BccI CCATC 2 cut(s) 317, 359
BceAI ACGGC 2 cut(s) 477, 523
BcgI CGANNNNNNTGC 2 cut(s) 664, 698
BciT130I CCWGG 2 cut(s) 452, 575
BclI TGATCA 1 cut(s) 28
BcnI CCSGG 2 cut(s) 235, 257
BcoDI GTCTC 4 cut(s) 180, 246, 250, 583
BfaI CTAG 2 cut(s) 20, 608
BfmI CTRYAG 2 cut(s) 412, 686
BfoI RGCGCY 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 819
Bme1390I CCNGG 4 cut(s) 235, 257, 452, 575
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 259, 571
BmiI GGNNCC 4 cut(s) 181, 260, 278, 329
BmrFI CCNGG 4 cut(s) 235, 257, 452, 575
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 375
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 261, 293
BpmI CTGGAG 1 cut(s) 603
Bpu1102I GCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 2 cut(s) 235, 257
Bsa29I ATCGAT 1 cut(s) 381
BsaAI YACGTR 2 cut(s) 101, 738
BsaBI GATNNNNATC 1 cut(s) 383
BsaHI GRCGYC 2 cut(s) 180, 306
BsaI GGTCTC 3 cut(s) 180, 246, 583
BsaJI CCNNGG 5 cut(s) 256, 355, 469, 561, 633
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 337
Bse118I RCCGGY 3 cut(s) 176, 337, 808
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 756
Bse8I GATNNNNATC 1 cut(s) 383
BseAI TCCGGA 1 cut(s) 248
BseBI CCWGG 2 cut(s) 452, 575
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 5 cut(s) 256, 355, 469, 561, 633
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 255, 337
BseMI GCAATG 1 cut(s) 756
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 124, 706
BseX3I CGGCCG 1 cut(s) 462
BseXI GCAGC 5 cut(s) 426, 474, 627, 631, 672
BseYI CCCAGC 2 cut(s) 491, 568
Bsh1236I CGCG 5 cut(s) 264, 317, 362, 425, 515
Bsh1285I CGRYCG 3 cut(s) 231, 321, 465
BshFI GGCC 5 cut(s) 261, 464, 510, 560, 573
BshNI GGYRCC 2 cut(s) 179, 327
BshVI ATCGAT 1 cut(s) 381
BsiEI CGRYCG 3 cut(s) 231, 321, 465
BsiHKCI CYCGRG 1 cut(s) 547
BsiWI CGTACG 1 cut(s) 619
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 2 cut(s) 255, 337
BsmAI GTCTC 4 cut(s) 180, 246, 250, 583
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 5 cut(s) 261, 464, 510, 560, 573
Bso31I GGTCTC 3 cut(s) 180, 246, 583
BsoBI CYCGRG 1 cut(s) 547
Bsp13I TCCGGA 1 cut(s) 248
Bsp143I GATC 6 cut(s) 28, 228, 288, 318, 378, 456
Bsp1720I GCTNAGC 1 cut(s) 819
BspANI GGCC 5 cut(s) 261, 464, 510, 560, 573
BspDI ATCGAT 1 cut(s) 381
BspEI TCCGGA 1 cut(s) 248
BspFNI CGCG 5 cut(s) 264, 317, 362, 425, 515
BspLI GGNNCC 4 cut(s) 181, 260, 278, 329
BspMAI CTGCAG 2 cut(s) 416, 690
BspPI GGATC 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 179, 327
BspTNI GGTCTC 3 cut(s) 180, 246, 583
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 3 cut(s) 176, 337, 808
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 3 cut(s) 176, 337, 808
BssECI CCNNGG 5 cut(s) 256, 355, 469, 561, 633
BssMI GATC 6 cut(s) 28, 228, 288, 318, 378, 456
BssNI GRCGYC 2 cut(s) 180, 306
BssT1I CCWWGG 2 cut(s) 355, 561
Bst2UI CCWGG 2 cut(s) 452, 575
Bst4CI ACNGT 1 cut(s) 408
BstACI GRCGYC 2 cut(s) 180, 306
BstBAI YACGTR 2 cut(s) 101, 738
BstC8I GCNNGC 3 cut(s) 285, 364, 660
BstDEI CTNAG 1 cut(s) 819
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 5 cut(s) 264, 317, 362, 425, 515
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 4 cut(s) 182, 200, 362, 517
BstKTI GATC 6 cut(s) 31, 231, 291, 321, 381, 459
BstMAI GTCTC 4 cut(s) 180, 246, 250, 583
BstMBI GATC 6 cut(s) 28, 228, 288, 318, 378, 456
BstMCI CGRYCG 3 cut(s) 231, 321, 465
BstMWI GCNNNNNNNGC 5 cut(s) 314, 372, 461, 484, 785
BstNI CCWGG 2 cut(s) 452, 575
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 4 cut(s) 233, 255, 450, 573
BstSFI CTRYAG 2 cut(s) 412, 686
BstUI CGCG 5 cut(s) 264, 317, 362, 425, 515
BstV1I GCAGC 5 cut(s) 426, 474, 627, 631, 672
BstV2I GAAGAC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 568
BstZI CGGCCG 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 381
BsuRI GGCC 5 cut(s) 261, 464, 510, 560, 573
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 1 cut(s) 351
Cac8I GCNNGC 3 cut(s) 285, 364, 660
CaiI CAGNNNCTG 1 cut(s) 487
CfoI GCGC 4 cut(s) 182, 200, 362, 517
Cfr10I RCCGGY 3 cut(s) 176, 337, 808
Cfr13I GGNCC 2 cut(s) 259, 571
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 2 cut(s) 314, 431
Csp6I GTAC 4 cut(s) 10, 409, 505, 620
CviAII CATG 2 cut(s) 298, 793
CviQI GTAC 4 cut(s) 10, 409, 505, 620
DdeI CTNAG 1 cut(s) 819
DinI GGCGCC 1 cut(s) 181
DpnI GATC 6 cut(s) 30, 230, 290, 320, 380, 458
DpnII GATC 6 cut(s) 28, 228, 288, 318, 378, 456
EaeI YGGCCR 2 cut(s) 462, 508
EagI CGGCCG 1 cut(s) 462
EclXI CGGCCG 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 355, 561
Eco31I GGTCTC 3 cut(s) 180, 246, 583
Eco32I GATATC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 464
Eco72I CACGTG 2 cut(s) 101, 738
Eco88I CYCGRG 1 cut(s) 547
EcoRI GAATTC 2 cut(s) 116, 742
EcoRII CCWGG 2 cut(s) 450, 573
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 355, 561
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 355, 561
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 2 cut(s) 301, 796
FaiI YATR 4 cut(s) 299, 404, 497, 794
FaqI GGGAC 1 cut(s) 685
FatI CATG 2 cut(s) 297, 792
FauI CCCGC 1 cut(s) 368
FbaI TGATCA 1 cut(s) 28
FblI GTMKAC 1 cut(s) 447
FokI GGATG 1 cut(s) 338
FspBI CTAG 2 cut(s) 20, 608
GlaI GCGC 4 cut(s) 181, 199, 361, 516
GsaI CCCAGC 2 cut(s) 495, 572
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 5 cut(s) 261, 464, 510, 560, 573
HgaI GACGC 2 cut(s) 314, 431
HhaI GCGC 4 cut(s) 182, 200, 362, 517
Hin1I GRCGYC 2 cut(s) 180, 306
Hin1II CATG 2 cut(s) 301, 796
Hin6I GCGC 4 cut(s) 180, 198, 360, 515
HinP1I GCGC 4 cut(s) 180, 198, 360, 515
HincII GTYRAC 3 cut(s) 160, 448, 531
HindII GTYRAC 3 cut(s) 160, 448, 531
HinfI GANTC 2 cut(s) 204, 624
HpaI GTTAAC 1 cut(s) 531
HphI GGTGA 6 cut(s) 103, 166, 304, 352, 382, 676
Hpy166II GTNNAC 3 cut(s) 160, 448, 531
Hpy188I TCNGA 4 cut(s) 33, 473, 763, 827
Hpy188III TCNNGA 4 cut(s) 140, 249, 554, 582
Hpy8I GTNNAC 3 cut(s) 160, 448, 531
Hpy99I CGWCG 4 cut(s) 269, 632, 734, 767
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 5 cut(s) 100, 156, 162, 729, 737
HpyCH4V TGCA 6 cut(s) 301, 366, 414, 647, 688, 796
HpyF10VI GCNNNNNNNGC 5 cut(s) 314, 372, 461, 484, 785
HpyF3I CTNAG 1 cut(s) 819
HpySE526I ACGT 5 cut(s) 100, 156, 162, 729, 737
Hsp92I GRCGYC 2 cut(s) 180, 306
Hsp92II CATG 2 cut(s) 301, 796
HspAI GCGC 4 cut(s) 180, 198, 360, 515
KasI GGCGCC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 28
KspAI GTTAAC 1 cut(s) 531
Kzo9I GATC 6 cut(s) 28, 228, 288, 318, 378, 456
LmnI GCTCC 5 cut(s) 282, 565, 604, 693, 712
Lsp1109I GCAGC 5 cut(s) 426, 474, 627, 631, 672
LweI GCATC 1 cut(s) 375
MaeI CTAG 2 cut(s) 20, 608
MaeII ACGT 5 cut(s) 100, 156, 162, 729, 737
MaeIII GTNAC 4 cut(s) 101, 388, 398, 664
MalI GATC 6 cut(s) 30, 230, 290, 320, 380, 458
MbiI CCGCTC 1 cut(s) 325
MboI GATC 6 cut(s) 28, 228, 288, 318, 378, 456
MboII GAAGA 3 cut(s) 46, 100, 421
MluCI AATT 4 cut(s) 24, 70, 116, 742
MluI ACGCGT 1 cut(s) 423
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 1 cut(s) 786
MroI TCCGGA 1 cut(s) 248
MseI TTAA 1 cut(s) 530
MspA1I CMGCKG 2 cut(s) 484, 658
MspR9I CCNGG 4 cut(s) 235, 257, 452, 575
MvaI CCWGG 2 cut(s) 452, 575
MvnI CGCG 5 cut(s) 264, 317, 362, 425, 515
MwoI GCNNNNNNNGC 5 cut(s) 314, 372, 461, 484, 785
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 2 cut(s) 235, 257
NdeII GATC 6 cut(s) 28, 228, 288, 318, 378, 456
NlaIII CATG 2 cut(s) 301, 796
NlaIV GGNNCC 4 cut(s) 181, 260, 278, 329
NmeAIII GCCGAG 1 cut(s) 658
NmuCI GTSAC 4 cut(s) 101, 388, 398, 664
NspI RCATGY 1 cut(s) 796
PfeI GAWTC 1 cut(s) 204
Pfl23II CGTACG 1 cut(s) 619
Ple19I CGATCG 2 cut(s) 231, 321
PleI GAGTC 1 cut(s) 618
PluTI GGCGCC 1 cut(s) 183
PmaCI CACGTG 2 cut(s) 101, 738
PmlI CACGTG 2 cut(s) 101, 738
PpsI GAGTC 1 cut(s) 618
Ppu21I YACGTR 2 cut(s) 101, 738
Psp6I CCWGG 2 cut(s) 450, 573
PspCI CACGTG 2 cut(s) 101, 738
PspFI CCCAGC 2 cut(s) 491, 568
PspGI CCWGG 2 cut(s) 450, 573
PspLI CGTACG 1 cut(s) 619
PspN4I GGNNCC 4 cut(s) 181, 260, 278, 329
PspPI GGNCC 2 cut(s) 259, 571
PstI CTGCAG 2 cut(s) 416, 690
PstNI CAGNNNCTG 1 cut(s) 487
PvuI CGATCG 2 cut(s) 231, 321
RsaI GTAC 4 cut(s) 11, 410, 506, 621
RsaNI GTAC 4 cut(s) 10, 409, 505, 620
SalI GTCGAC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 530
Sau3AI GATC 6 cut(s) 28, 228, 288, 318, 378, 456
Sau96I GGNCC 2 cut(s) 259, 571
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 4 cut(s) 235, 257, 452, 575
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 2 cut(s) 412, 686
SfoI GGCGCC 1 cut(s) 181
SgrAI CRCCGGYG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 4 cut(s) 24, 70, 116, 742
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 2 cut(s) 20, 608
StyD4I CCNGG 4 cut(s) 233, 255, 450, 573
StyI CCWWGG 2 cut(s) 355, 561
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 5 cut(s) 103, 159, 165, 732, 740
TaqI TCGA 7 cut(s) 141, 207, 227, 321, 381, 447, 596
TaqII GACCGA 1 cut(s) 424
TasI AATT 4 cut(s) 24, 70, 116, 742
TauI GCSGC 5 cut(s) 264, 350, 375, 487, 658
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TseFI GTSAC 4 cut(s) 101, 388, 398, 664
TseI GCWGC 5 cut(s) 414, 487, 615, 644, 685
Tsp45I GTSAC 4 cut(s) 101, 388, 398, 664
TspGWI ACGGA 3 cut(s) 232, 282, 788
XapI RAATTY 2 cut(s) 116, 742
XceI RCATGY 1 cut(s) 796
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 2 cut(s) 20, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.