Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

53761334 .. 53765576

Gene Structure 4243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG382500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTTGCAATTTTTTCCCCCGTCTCATATTATCTCTCTGCACAGGACTTGAGTAACCAATCTAGGTTATTGCAAACCCAACTTTCCGAAATAAAGAAGAGATTAAGCTGTTGGATGAACCCTGATAAGATCAACAGTGTAGATCAGTTGGGGCAAATGGAAGATTCAATTAGAGAATCGCTTAACCAGATTCGAACACATAAGGAAAACTTACAAAAACAACAACTAATGTCATTAGAATGCACCAGTCAGTTCCAAAATGGATTGCATATACCCTTCAGCATGAGTACTGAGCAACAACTCCAGCCTCTGCCATGGATTCCTAGTAATGAAAACCGGCATATCGTTTTACCAGAGGACCCGAACTTGCTTCCTCATAGGGATATAGAATGTTCTGCAAGTTCCTCCTTTGGCAGTTACTCTGGTTACCTTGGGACAGGAAAAAGTCCAGAGATTTCCAACTCTGGTCAGGAAAACGGTATTCTAAATGACTTGAGCAGAACTGCGCCACTGAGGCTACAGCTGGGCGGGCAGTTTTCCTCCTACCTTCCATACAATCTCAATATGTTGACCGATACAAAATTTCAACAACCCACAGAAATGAGTCCTCAAGAAAAACCTGTGGAATATCATGTTAATGGAAGCTTTGAAGCTCCTAGACCTGATTTTTTCGCTACCCAGCATAGCTGGGCATCTACATCTGGTCCCTGTGCTGTTACTATGTTTGACGAGCATTTATATTCCCAGACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

251

Amino Acids

28.38

Weight (kDa)

5.21

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	3 cut(s)	168, 587, 650
AluBI	AGCT	5 cut(s)	108, 523, 645, 653, 687
AluI	AGCT	5 cut(s)	108, 523, 645, 653, 687
Alw26I	GTCTC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	358, 704
AsuII	TTCGAA	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	358, 704
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	3 cut(s)	63, 324, 657
BfmI	CTRYAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	514
BmcAI	AGTACT	1 cut(s)	289
Bme18I	GGWCC	2 cut(s)	358, 704
BmgT120I	GGNCC	2 cut(s)	358, 704
BmiI	GGNNCC	2 cut(s)	360, 706
BmsI	GCATC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	193
BpuEI	CTTGAG	3 cut(s)	70, 514, 594
BsaJI	CCNNGG	2 cut(s)	314, 430
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	314, 430
BseGI	GGATG	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	282, 503
BseNI	ACTGG	1 cut(s)	246
BseYI	CCCAGC	3 cut(s)	523, 678, 687
BsgI	GTGCAG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	2 cut(s)	448, 690
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	448, 690
BsmI	GAATGC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	129, 142
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	1 cut(s)	528
BspCNI	CTCAG	2 cut(s)	283, 504
BspLI	GGNNCC	2 cut(s)	360, 706
BspT104I	TTCGAA	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	314, 430
BssMI	GATC	2 cut(s)	129, 142
BssT1I	CCWWGG	2 cut(s)	314, 430
Bst4CI	ACNGT	2 cut(s)	137, 479
Bst6I	CTCTTC	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	2 cut(s)	291, 512
BstDSI	CCRYGG	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	2 cut(s)	132, 145
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	2 cut(s)	129, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 529
BstPI	GGTNACC	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	518
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	142, 509
Cac8I	GCNNGC	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	358, 704
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	283, 315, 632
CviJI	RGCY	7 cut(s)	108, 307, 517, 523, 645, 653, 687
CviKI_1	RGCY	7 cut(s)	108, 307, 517, 523, 645, 653, 687
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	291, 512
DpnI	GATC	2 cut(s)	131, 144
DpnII	GATC	2 cut(s)	129, 142
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	314, 430
Eco47I	GGWCC	2 cut(s)	358, 704
Eco57I	CTGAAG	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	314, 430
ErhI	CCWWGG	2 cut(s)	314, 430
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	286, 318, 635
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	2 cut(s)	448, 690
FatI	CATG	3 cut(s)	282, 314, 631
FauI	CCCGC	1 cut(s)	521
FokI	GGATG	1 cut(s)	127
FspBI	CTAG	3 cut(s)	63, 324, 657
GlaI	GCGC	1 cut(s)	507
GsaI	CCCAGC	3 cut(s)	527, 682, 691
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	1 cut(s)	337
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	3 cut(s)	286, 318, 635
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	5 cut(s)	164, 176, 190, 319, 604
HpaII	CCGG	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	449, 470, 611
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	286, 557
HpyCH4III	ACNGT	2 cut(s)	137, 479
HpyCH4V	TGCA	6 cut(s)	8, 41, 73, 243, 268, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 529
HpyF3I	CTNAG	2 cut(s)	291, 512
Hsp92II	CATG	3 cut(s)	286, 318, 635
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	2 cut(s)	129, 142
LmnI	GCTCC	1 cut(s)	658
LweI	GCATC	1 cut(s)	701
MaeI	CTAG	3 cut(s)	63, 324, 657
MaeIII	GTNAC	4 cut(s)	53, 416, 425, 715
MalI	GATC	2 cut(s)	131, 144
MboI	GATC	2 cut(s)	129, 142
MboII	GAAGA	2 cut(s)	109, 173
MluCI	AATT	3 cut(s)	9, 168, 581
MlyI	GAGTC	1 cut(s)	613
MmeI	TCCRAC	2 cut(s)	92, 483
MnlI	CCTC	7 cut(s)	318, 349, 384, 415, 507, 550, 618
MseI	TTAA	3 cut(s)	104, 183, 636
MslI	CAYNNNNRTG	3 cut(s)	238, 599, 636
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	514, 529
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	2 cut(s)	129, 142
NlaIII	CATG	3 cut(s)	286, 318, 635
NlaIV	GGNNCC	2 cut(s)	360, 706
NspV	TTCGAA	1 cut(s)	193
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	4 cut(s)	164, 176, 190, 319
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PpuMI	RGGWCCY	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	425
PspFI	CCCAGC	3 cut(s)	523, 678, 687
PspN4I	GGNNCC	2 cut(s)	360, 706
PspPI	GGNCC	2 cut(s)	358, 704
PspPPI	RGGWCCY	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	3 cut(s)	238, 599, 636
SaqAI	TTAA	3 cut(s)	104, 183, 636
Sau3AI	GATC	2 cut(s)	129, 142
Sau96I	GGNCC	2 cut(s)	358, 704
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	1 cut(s)	613
SfaNI	GCATC	1 cut(s)	701
SfcI	CTRYAG	1 cut(s)	518
SfuI	TTCGAA	1 cut(s)	193
SinI	GGWCC	2 cut(s)	358, 704
SmiMI	CAYNNNNRTG	3 cut(s)	238, 599, 636
SmlI	CTYRAG	3 cut(s)	49, 493, 609
SmoI	CTYRAG	3 cut(s)	49, 493, 609
Sse9I	AATT	3 cut(s)	9, 168, 581
SsiI	CCGC	1 cut(s)	528
SspMI	CTAG	3 cut(s)	63, 324, 657
StyI	CCWWGG	2 cut(s)	314, 430
TaaI	ACNGT	2 cut(s)	137, 479
TaqI	TCGA	1 cut(s)	193
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	3 cut(s)	9, 168, 581
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	4 cut(s)	164, 176, 190, 319
Tru1I	TTAA	3 cut(s)	104, 183, 636
Tru9I	TTAA	3 cut(s)	104, 183, 636
TscAI	CASTG	2 cut(s)	142, 516
TspDTI	ATGAA	2 cut(s)	131, 345
TspRI	CASTG	2 cut(s)	142, 516
VpaK11BI	GGWCC	2 cut(s)	358, 704
XapI	RAATTY	1 cut(s)	581
XspI	CTAG	3 cut(s)	63, 324, 657
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.