Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

6621777 .. 6623668

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCGAGTTCTATGGAATGTTCTGAGTTCGTCGGTAGCCGGAGATTTACTGGGAAGAAGCCTAGCTTCTCACAGACGTGTAGTCGATTGAGTCAGTATCTAAAAGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGAATGGCATGCAAGCCTGATGTCAATGGAACTTTAGGCAACTCACGTCAGCCGACAACAACCATGAGTTTATTCCCTTGTGAAGCTTCTAACATGGATTCCATGGTTCAAGATGTTAAACCGACGAATCTGTTTCCTAGGCAACCAAGCTTTTCTTCCTCATCTTCCTCTCTTCCAAAGGAAGATGTTTTGAAAATGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCTACGCCGGGCAAGTGATTGTATTCAATGACTTTTCTGCTGAGAAAGCCAAAGAAGTGATCAACTTGGCGAGCAAAGGCACCGCTAATAGCTTAGCCAAGAATCAAACCGATATCAGAAGCAACATCGCTACTATCGCAAACCAAGTTCCTCATCCAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTCCTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGAGTTACGTCAAAGGCACCATACCAATTATGCGATCCAGCCAAAGCGTCTTCAAACCCTCAAACCACAGGCAACATGTCGTGGCTCGGTTTAGCAGCTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

253

Amino Acids

27.61

Weight (kDa)

9.44

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	122 - 154	6.2e-16	tify domain
Jas_motif	PF09425	202 - 227	3.1e-15	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	467, 670
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	1 cut(s)	683
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflIII	ACRYGT	2 cut(s)	77, 729
AgeI	ACCGGT	1 cut(s)	630
AgsI	TTSAA	4 cut(s)	245, 328, 415, 708
AhdI	GACNNNNNGTC	1 cut(s)	81
AjiI	CACGTC	2 cut(s)	78, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AleI	CACNNNNGTG	1 cut(s)	76
AluBI	AGCT	8 cut(s)	66, 117, 132, 221, 285, 480, 620, 752
AluI	AGCT	8 cut(s)	66, 117, 132, 221, 285, 480, 620, 752
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	683
ApeKI	GCWGC	1 cut(s)	749
AsiGI	ACCGGT	1 cut(s)	630
Asp700I	GAANNNNTTC	1 cut(s)	619
AspA2I	CCTAGG	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	620
AvrII	CCTAGG	1 cut(s)	272
BanI	GGYRCC	2 cut(s)	467, 670
BbsI	GAAGAC	1 cut(s)	696
BclI	TGATCA	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	3 cut(s)	63, 273, 612
BglII	AGATCT	2 cut(s)	124, 347
BisI	GCNGC	1 cut(s)	750
BlnI	CCTAGG	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	751
Bme1390I	CCNGG	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmgBI	CACGTC	2 cut(s)	78, 182
BmiI	GGNNCC	2 cut(s)	469, 672
BmrFI	CCNGG	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	481
BpuMI	CCSGG	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	237, 272
BsaWI	WCCGGW	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse118I	RCCGGY	1 cut(s)	630
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	237, 272
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMII	CTCAG	3 cut(s)	15, 119, 420
BseNI	ACTGG	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	357
BshNI	GGYRCC	2 cut(s)	467, 670
BshTI	ACCGGT	1 cut(s)	630
BsiSI	CCGG	3 cut(s)	40, 396, 631
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	124, 347, 447, 688
Bsp1720I	GCTNAGC	1 cut(s)	481
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	1 cut(s)	471
BspCNI	CTCAG	3 cut(s)	16, 120, 421
BspLI	GGNNCC	2 cut(s)	469, 672
BspPI	GGATC	1 cut(s)	683
BspQI	GCTCTTC	1 cut(s)	610
BspT107I	GGYRCC	2 cut(s)	467, 670
BsrFI	RCCGGY	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	630
BssECI	CCNNGG	2 cut(s)	237, 272
BssMI	GATC	4 cut(s)	124, 347, 447, 688
BssT1I	CCWWGG	2 cut(s)	237, 272
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	3 cut(s)	312, 610, 638
BstC8I	GCNNGC	3 cut(s)	145, 149, 460
BstDEI	CTNAG	5 cut(s)	24, 128, 133, 429, 481
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	4 cut(s)	127, 350, 450, 691
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	4 cut(s)	124, 347, 447, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 524, 617
BstNSI	RCATGY	2 cut(s)	147, 733
BstSCI	CCNGG	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	124, 347
BstYI	RGATCY	2 cut(s)	124, 347
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	499
BtrI	CACGTC	2 cut(s)	78, 182
BtsCI	GGATG	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	145, 149, 460
Cfr10I	RCCGGY	1 cut(s)	630
CseI	GACGC	1 cut(s)	690
CspAI	ACCGGT	1 cut(s)	630
CviAII	CATG	5 cut(s)	144, 199, 229, 238, 730
DdeI	CTNAG	5 cut(s)	24, 128, 133, 429, 481
DpnI	GATC	4 cut(s)	126, 349, 449, 690
DpnII	GATC	4 cut(s)	124, 347, 447, 688
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1104I	CTCTTC	3 cut(s)	312, 610, 638
Eam1105I	GACNNNNNGTC	1 cut(s)	81
EarI	CTCTTC	3 cut(s)	312, 610, 638
Eco130I	CCWWGG	2 cut(s)	237, 272
Eco32I	GATATC	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	237, 272
ErhI	CCWWGG	2 cut(s)	237, 272
FaeI	CATG	5 cut(s)	147, 202, 232, 241, 733
FalI	AAGNNNNNCTT	4 cut(s)	50, 82, 274, 306
FatI	CATG	5 cut(s)	143, 198, 228, 237, 729
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	750
FokI	GGATG	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	750
FspBI	CTAG	3 cut(s)	63, 273, 612
GluI	GCNGC	1 cut(s)	750
HapII	CCGG	3 cut(s)	40, 396, 631
HgaI	GACGC	1 cut(s)	690
Hin1II	CATG	5 cut(s)	147, 202, 232, 241, 733
HindIII	AAGCTT	2 cut(s)	219, 283
HinfI	GANTC	5 cut(s)	91, 233, 262, 362, 490
HpaII	CCGG	3 cut(s)	40, 396, 631
HphI	GGTGA	1 cut(s)	620
Hpy188I	TCNGA	3 cut(s)	25, 129, 506
Hpy188III	TCNNGA	1 cut(s)	245
Hpy99I	CGWCG	2 cut(s)	35, 262
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	3 cut(s)	77, 181, 662
HpyCH4V	TGCA	2 cut(s)	147, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 524, 617
HpyF3I	CTNAG	5 cut(s)	24, 128, 133, 429, 481
HpySE526I	ACGT	3 cut(s)	77, 181, 662
Hsp92II	CATG	5 cut(s)	147, 202, 232, 241, 733
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	124, 347, 447, 688
LguI	GCTCTTC	1 cut(s)	610
LpnPI	CCDG	9 cut(s)	36, 53, 165, 358, 372, 409, 644, 705, 708
MaeI	CTAG	3 cut(s)	63, 273, 612
MaeII	ACGT	3 cut(s)	77, 181, 662
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	4 cut(s)	126, 349, 449, 690
MboI	GATC	4 cut(s)	124, 347, 447, 688
MboII	GAAGA	8 cut(s)	67, 282, 291, 299, 329, 627, 655, 696
MflI	RGATCY	2 cut(s)	124, 347
MluCI	AATT	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	100, 371
MnlI	CCTC	5 cut(s)	304, 313, 549, 589, 723
MroXI	GAANNNNTTC	1 cut(s)	619
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	76
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	3 cut(s)	40, 396, 631
MspR9I	CCNGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	3 cut(s)	434, 524, 617
NciI	CCSGG	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	4 cut(s)	124, 347, 447, 688
NlaIII	CATG	5 cut(s)	147, 202, 232, 241, 733
NlaIV	GGNNCC	2 cut(s)	469, 672
NspI	RCATGY	2 cut(s)	147, 733
OliI	CACNNNNGTG	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	147
PciI	ACATGT	1 cut(s)	729
PciSI	GCTCTTC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	233, 262, 490
PinAI	ACCGGT	1 cut(s)	630
PkrI	GCNGC	1 cut(s)	751
PleI	GAGTC	2 cut(s)	99, 370
PpsI	GAGTC	2 cut(s)	99, 370
PscI	ACATGT	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	469, 672
PsuI	RGATCY	2 cut(s)	124, 347
PvuII	CAGCTG	1 cut(s)	752
RseI	CAYNNNNRTG	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	750
Sau3AI	GATC	4 cut(s)	124, 347, 447, 688
SchI	GAGTC	2 cut(s)	100, 371
ScrFI	CCNGG	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	76
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	1 cut(s)	680
SsiI	CCGC	1 cut(s)	471
SspMI	CTAG	3 cut(s)	63, 273, 612
StyD4I	CCNGG	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	237, 272
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	3 cut(s)	80, 184, 665
TaqI	TCGA	2 cut(s)	5, 85
TasI	AATT	1 cut(s)	680
TfiI	GAWTC	3 cut(s)	233, 262, 490
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	1 cut(s)	749
XceI	RCATGY	2 cut(s)	147, 733
XmaJI	CCTAGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	3 cut(s)	63, 273, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.