Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

8407910 .. 8409645

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCGAGCTCGTCGGAAGCCACCGAGATGATGATGAGAATGGCGGAGAAGCCACCCAGTTTCAGTCAGACTTGTAGCATGCTCTACCAGTTCCTCAAGGAGAAAGGTGCCAACTTGGGAGATCTGAACCTTGACATGCAGCTCCCTAATAATAATGGGAGTGGTGAGATGTTTCACCAGAAGACCCAGCAGATGAATTTTTTTCCGGTCATGGAGAAACCGAGGAACGTGCCGGCTCCGAGTCCGAGGGACTTCAAATCCATGGATTTGTTCCCTCAGCAAGCTGGATTTGGACCTCCTCTGCCCAAGATGACTGATTCTAGTGTGAAGAAGACGGTCCCAGGGGAGCCCCAAAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTGATAGTGTTCGATGATTTTCCGGCTGAGAAGGCAAAGGAGGTGATGCTCTTAGCAAGCAAGGAGAGCTCCAAGAGCCACCACGCTGCTCATGTTTCTGCTCCGGTCAAGGCCAACACCAACTCTGCTTTTGCCTCTCATTTGGGGAAGGTTCCGATCAATTCCGGCACCGGCACCGCCCCGGTTGCTCCGAGCTCAAACCCTTTCCCCAAGTTCGGCAATCAAGTGATTCAGCAACAGGAGACCATCAAGCCAACCCCGACTCGTCCCATCATTTCTGATATACCAATGCAAAGGAAGGCTTCACTTCAACGCTTCCTGGCGAAGAGGAAGGATAGGATTAACAGCACGGCTCCATACCAAATGAGCAGCCCCAGTCCTTCAGGCCCTGCAAAGCCGGAAGCTGAAAGCAAGTCATGGTTAGGCTTGGCAGCTCAGCCAACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

278

Amino Acids

30.34

Weight (kDa)

9.58

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	116 - 149	1.3e-19	tify domain
Jas_motif	PF09425	225 - 250	2.3e-13	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	107, 554, 560
AciI	CCGC	2 cut(s)	44, 564
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	753
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	256, 698
AjnI	CCWGG	2 cut(s)	340, 705
AluBI	AGCT	7 cut(s)	9, 142, 284, 456, 582, 791, 821
AluI	AGCT	7 cut(s)	9, 142, 284, 456, 582, 791, 821
Alw21I	GWGCWC	3 cut(s)	11, 458, 584
Alw26I	GTCTC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	3 cut(s)	357, 498, 772
ApeKI	GCWGC	4 cut(s)	139, 473, 756, 818
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	4 cut(s)	293, 337, 358, 773
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	167, 176, 442
AvaII	GGWCC	2 cut(s)	293, 337
BanI	GGYRCC	3 cut(s)	107, 554, 560
BanII	GRGCYC	4 cut(s)	11, 351, 458, 584
BbsI	GAAGAC	2 cut(s)	188, 338
Bbv12I	GWGCWC	3 cut(s)	11, 458, 584
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	4 cut(s)	151, 460, 768, 830
BccI	CCATC	3 cut(s)	377, 641, 665
BceAI	ACGGC	1 cut(s)	753
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	342, 707
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	321
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	4 cut(s)	140, 474, 757, 819
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	4 cut(s)	141, 475, 758, 820
Bme1390I	CCNGG	3 cut(s)	342, 569, 707
Bme18I	GGWCC	2 cut(s)	293, 337
BmgT120I	GGNCC	4 cut(s)	293, 337, 358, 773
BmiI	GGNNCC	8 cut(s)	109, 237, 339, 348, 540, 556, 562, 741
BmrFI	CCNGG	3 cut(s)	342, 569, 707
BmrI	ACTGGG	2 cut(s)	51, 756
BmsI	GCATC	1 cut(s)	423
BmuI	ACTGGG	2 cut(s)	51, 756
BpiI	GAAGAC	2 cut(s)	188, 338
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	6 cut(s)	221, 245, 261, 340, 341, 567
BsaWI	WCCGGW	2 cut(s)	205, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	2 cut(s)	232, 557
Bse1I	ACTGG	3 cut(s)	57, 88, 762
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	342, 707
BseDI	CCNNGG	6 cut(s)	221, 245, 261, 340, 341, 567
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMII	CTCAG	3 cut(s)	290, 405, 836
BseNI	ACTGG	3 cut(s)	57, 88, 762
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	4 cut(s)	151, 460, 768, 830
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	3 cut(s)	359, 500, 774
BshNI	GGYRCC	3 cut(s)	107, 554, 560
BsiHKAI	GWGCWC	3 cut(s)	11, 458, 584
BsiSI	CCGG	8 cut(s)	206, 233, 410, 491, 552, 558, 569, 785
BslFI	GGGAC	3 cut(s)	263, 323, 639
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	3 cut(s)	263, 323, 639
BsnI	GGCC	3 cut(s)	359, 500, 774
Bso31I	GGTCTC	1 cut(s)	623
Bsp1286I	GDGCHC	4 cut(s)	11, 351, 458, 584
Bsp143I	GATC	2 cut(s)	121, 543
Bsp1720I	GCTNAGC	1 cut(s)	822
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	2 cut(s)	44, 564
BspANI	GGCC	3 cut(s)	359, 500, 774
BspCNI	CTCAG	3 cut(s)	289, 406, 835
BspLI	GGNNCC	8 cut(s)	109, 237, 339, 348, 540, 556, 562, 741
BspT107I	GGYRCC	3 cut(s)	107, 554, 560
BspTNI	GGTCTC	1 cut(s)	623
BsrFI	RCCGGY	2 cut(s)	232, 557
BsrI	ACTGG	3 cut(s)	57, 88, 762
BssAI	RCCGGY	2 cut(s)	232, 557
BssECI	CCNNGG	6 cut(s)	221, 245, 261, 340, 341, 567
BssMI	GATC	2 cut(s)	121, 543
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	342, 707
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	707
BstC8I	GCNNGC	4 cut(s)	80, 234, 282, 445
BstDEI	CTNAG	5 cut(s)	276, 414, 439, 822, 831
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	124, 546
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	121, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 572
BstNI	CCWGG	2 cut(s)	342, 707
BstNSI	RCATGY	2 cut(s)	82, 139
BstSCI	CCNGG	3 cut(s)	340, 567, 705
BstV1I	GCAGC	4 cut(s)	151, 460, 768, 830
BstV2I	GAAGAC	2 cut(s)	188, 338
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	359, 500, 774
BtgI	CCRYGG	1 cut(s)	261
Cac8I	GCNNGC	4 cut(s)	80, 234, 282, 445
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr10I	RCCGGY	2 cut(s)	232, 557
Cfr13I	GGNCC	4 cut(s)	293, 337, 358, 773
CviAII	CATG	6 cut(s)	79, 136, 211, 262, 479, 804
DdeI	CTNAG	5 cut(s)	276, 414, 439, 822, 831
DpnI	GATC	2 cut(s)	123, 545
DpnII	GATC	2 cut(s)	121, 543
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	3 cut(s)	9, 456, 582
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	4 cut(s)	11, 351, 458, 584
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	293, 337
Eco53kI	GAGCTC	3 cut(s)	9, 456, 582
Eco57I	CTGAAG	1 cut(s)	753
EcoICRI	GAGCTC	3 cut(s)	9, 456, 582
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	2 cut(s)	340, 705
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	4 cut(s)	11, 351, 458, 584
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	6 cut(s)	82, 139, 214, 265, 482, 807
FaiI	YATR	9 cut(s)	80, 137, 212, 263, 378, 480, 671, 745, 805
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	3 cut(s)	263, 323, 639
FatI	CATG	6 cut(s)	78, 135, 210, 261, 478, 803
Fnu4HI	GCNGC	4 cut(s)	140, 474, 757, 819
FriOI	GRGCYC	4 cut(s)	11, 351, 458, 584
Fsp4HI	GCNGC	4 cut(s)	140, 474, 757, 819
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	4 cut(s)	140, 474, 757, 819
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	359, 500, 774
HapII	CCGG	8 cut(s)	206, 233, 410, 491, 552, 558, 569, 785
Hin1II	CATG	6 cut(s)	82, 139, 214, 265, 482, 807
HinfI	GANTC	4 cut(s)	241, 317, 616, 649
HpaII	CCGG	8 cut(s)	206, 233, 410, 491, 552, 558, 569, 785
HphI	GGTGA	3 cut(s)	167, 176, 442
Hpy188I	TCNGA	8 cut(s)	16, 69, 126, 240, 246, 543, 579, 667
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	412, 529, 679, 712, 777
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	139, 679, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 572
HpyF3I	CTNAG	5 cut(s)	276, 414, 439, 822, 831
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	82, 139, 214, 265, 482, 807
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	121, 543
LmnI	GCTCC	7 cut(s)	147, 241, 346, 461, 493, 580, 745
Lsp1109I	GCAGC	4 cut(s)	151, 460, 768, 830
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	123, 545
MboI	GATC	2 cut(s)	121, 543
MboII	GAAGA	5 cut(s)	193, 340, 343, 364, 724
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	4 cut(s)	11, 351, 458, 584
MluCI	AATT	2 cut(s)	196, 547
MlyI	GAGTC	2 cut(s)	250, 643
MnlI	CCTC	9 cut(s)	104, 216, 240, 285, 306, 309, 421, 532, 708
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	8 cut(s)	206, 233, 410, 491, 552, 558, 569, 785
MspR9I	CCNGG	3 cut(s)	342, 569, 707
MvaI	CCWGG	2 cut(s)	342, 707
MwoI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 572
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	121, 543
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	6 cut(s)	82, 139, 214, 265, 482, 807
NlaIV	GGNNCC	8 cut(s)	109, 237, 339, 348, 540, 556, 562, 741
NspI	RCATGY	2 cut(s)	82, 139
PaeI	GCATGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	341
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	317, 616
PkrI	GCNGC	4 cut(s)	141, 475, 758, 820
PleI	GAGTC	2 cut(s)	249, 643
PpsI	GAGTC	2 cut(s)	249, 643
Psp124BI	GAGCTC	3 cut(s)	11, 458, 584
Psp6I	CCWGG	2 cut(s)	340, 705
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	340, 705
PspN4I	GGNNCC	8 cut(s)	109, 237, 339, 348, 540, 556, 562, 741
PspPI	GGNCC	4 cut(s)	293, 337, 358, 773
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	3 cut(s)	11, 458, 584
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	4 cut(s)	140, 474, 757, 819
Sau3AI	GATC	2 cut(s)	121, 543
Sau96I	GGNCC	4 cut(s)	293, 337, 358, 773
SchI	GAGTC	2 cut(s)	250, 643
ScrFI	CCNGG	3 cut(s)	342, 569, 707
SduI	GDGCHC	4 cut(s)	11, 351, 458, 584
SfaNI	GCATC	1 cut(s)	423
SinI	GGWCC	2 cut(s)	293, 337
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	196, 547
SsiI	CCGC	2 cut(s)	44, 564
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	3 cut(s)	11, 458, 584
StyD4I	CCNGG	3 cut(s)	340, 567, 705
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	5, 399
TasI	AATT	2 cut(s)	196, 547
TfiI	GAWTC	2 cut(s)	317, 616
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TseI	GCWGC	4 cut(s)	139, 473, 756, 818
TspDTI	ATGAA	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	293, 337
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	2 cut(s)	82, 139
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.