Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Reverse (-)

28148574 .. 28150446

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCGAGTTTTTCTGCCGAGTGTTGGGACTTCTCTGGTCGTAAACCGAGCTTTTCACAAACATGTACTCGATTGAGTCGTTACCTGAAGGAGAAGGGTAGTTTTGGAGATCTGAGCTTAGGGATGACATGCAAGCCCGACGTTAATGGAGGTTCACGTCAGCCTACAATGATGAATCTGTTCCCTTGTGAAGCTTCAGGAATGGATTCTTCTGCTGGTCAAGAAGACATTAAACCGAAGACTATGTTTCCGAGACAATCAAGCTTTTCTTCTTCCTCTTCCTCTGGGACCAAAGAAGATGTACAGATGATCAAAGAGACTACTAAATCTGTGAAGCCAGAGTCTCAATCTGCTCCGTTGACTATATTCTACGGTGGTCGAGTTATGGTGTTTGATGATTTTTCTGCTGAGAAAGCTAAAGAAGTCATTGATTTGGCTAACAAAGGAAGTGCCAAAAGCTTCACATGTTTCACAGCTGAAGTAAACAATAACCATAGTGCTTATTCTCAAAAAGAGATTGCTTCTAGCCCAAATCCTGTTTGTAGTCCTGCAAAAACCGCAGCACAAGAGCCAATTCAGCCTAACCCGGCCTCTTTAGCCTGCGAACTCCCGATTGCAAGAAGAGCTTCACTTCATCGGTTCCTTGAGAAGAGGAAGGATAGGATCACATCAAAGGCACCATACCAAATAGACGGTTCAGCTGAAGCGTCTTCCAAGCCTACTAACCCAGCTTGGCTCAGTTCACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

249

Amino Acids

27.07

Weight (kDa)

8.92

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	115 - 147	4.2e-17	tify domain
Jas_motif	PF09425	204 - 229	1.6e-15	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	676
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	1 cut(s)	671
AcuI	CTGAAG	4 cut(s)	107, 180, 498, 723
AfaI	GTAC	2 cut(s)	67, 303
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflIII	ACRYGT	2 cut(s)	62, 464
AjiI	CACGTC	1 cut(s)	158
Alw26I	GTCTC	3 cut(s)	247, 311, 348
AlwI	GGATC	1 cut(s)	671
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	560
Asp700I	GAANNNNTTC	3 cut(s)	179, 205, 625
AspS9I	GGNCC	1 cut(s)	288
AsuC2I	CCSGG	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	676
BbsI	GAAGAC	3 cut(s)	231, 245, 702
BbvI	GCAGC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	3 cut(s)	247, 311, 348
BfaI	CTAG	1 cut(s)	525
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	3 cut(s)	289, 641, 678
BmrFI	CCNGG	1 cut(s)	587
BpiI	GAAGAC	3 cut(s)	231, 245, 702
Bpu10I	CCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	104, 399
BseXI	GCAGC	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	727
BshFI	GGCC	1 cut(s)	590
BshNI	GGYRCC	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	2 cut(s)	41, 301
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	247, 311, 348
BsmFI	GGGAC	2 cut(s)	41, 301
BsnI	GGCC	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	109, 309, 663
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	3 cut(s)	105, 400, 750
BspLI	GGNNCC	3 cut(s)	289, 641, 678
BspPI	GGATC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	676
BsrGI	TGTACA	1 cut(s)	301
BssMI	GATC	3 cut(s)	109, 309, 663
Bst4CI	ACNGT	3 cut(s)	374, 695, 747
Bst6I	CTCTTC	3 cut(s)	283, 616, 644
BstAUI	TGTACA	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	134, 601
BstDEI	CTNAG	4 cut(s)	113, 118, 408, 737
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	112, 312, 666
BstMAI	GTCTC	3 cut(s)	247, 311, 348
BstMBI	GATC	3 cut(s)	109, 309, 663
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 557, 577, 596, 623
BstNSI	RCATGY	3 cut(s)	66, 132, 468
BstSCI	CCNGG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	572
BstV2I	GAAGAC	3 cut(s)	231, 245, 702
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	134, 601
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	66, 302
CviAII	CATG	3 cut(s)	63, 129, 465
CviQI	GTAC	2 cut(s)	66, 302
DdeI	CTNAG	4 cut(s)	113, 118, 408, 737
DpnI	GATC	3 cut(s)	111, 311, 665
DpnII	GATC	3 cut(s)	109, 309, 663
Eam1104I	CTCTTC	3 cut(s)	283, 616, 644
EarI	CTCTTC	3 cut(s)	283, 616, 644
Eco47I	GGWCC	1 cut(s)	288
Eco57I	CTGAAG	4 cut(s)	107, 180, 498, 723
FaeI	CATG	3 cut(s)	66, 132, 468
FaiI	YATR	8 cut(s)	64, 130, 245, 365, 386, 466, 495, 682
FalI	AAGNNNNNCTT	4 cut(s)	253, 285, 610, 642
FaqI	GGGAC	2 cut(s)	41, 301
FatI	CATG	3 cut(s)	62, 128, 464
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	1 cut(s)	587
HgaI	GACGC	1 cut(s)	696
Hin1II	CATG	3 cut(s)	66, 132, 468
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	3 cut(s)	192, 262, 457
HinfI	GANTC	4 cut(s)	76, 175, 206, 341
HpaII	CCGG	1 cut(s)	587
Hpy166II	GTNNAC	5 cut(s)	44, 155, 360, 484, 743
Hpy188I	TCNGA	2 cut(s)	114, 252
Hpy188III	TCNNGA	3 cut(s)	198, 221, 610
Hpy8I	GTNNAC	5 cut(s)	44, 155, 360, 484, 743
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	82, 88, 649
HpyCH4III	ACNGT	3 cut(s)	374, 695, 747
HpyCH4IV	ACGT	2 cut(s)	141, 157
HpyCH4V	TGCA	3 cut(s)	132, 551, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 557, 577, 596, 623
HpyF3I	CTNAG	4 cut(s)	113, 118, 408, 737
HpySE526I	ACGT	2 cut(s)	141, 157
Hsp92II	CATG	3 cut(s)	66, 132, 468
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	109, 309, 663
LguI	GCTCTTC	1 cut(s)	616
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	1 cut(s)	572
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	2 cut(s)	141, 157
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	111, 311, 665
MboI	GATC	3 cut(s)	109, 309, 663
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	1 cut(s)	573
MlyI	GAGTC	2 cut(s)	85, 350
MnlI	CCTC	5 cut(s)	143, 286, 292, 601, 645
MroXI	GAANNNNTTC	3 cut(s)	179, 205, 625
MseI	TTAA	2 cut(s)	144, 231
MslI	CAYNNNNRTG	1 cut(s)	61
MspA1I	CMGCKG	2 cut(s)	476, 701
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	5 cut(s)	413, 557, 577, 596, 623
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	3 cut(s)	109, 309, 663
NlaIII	CATG	3 cut(s)	66, 132, 468
NlaIV	GGNNCC	3 cut(s)	289, 641, 678
NmeAIII	GCCGAG	1 cut(s)	43
NspI	RCATGY	3 cut(s)	66, 132, 468
PciI	ACATGT	2 cut(s)	62, 464
PciSI	GCTCTTC	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PdmI	GAANNNNTTC	3 cut(s)	179, 205, 625
PfeI	GAWTC	2 cut(s)	175, 206
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	2 cut(s)	84, 349
PpsI	GAGTC	2 cut(s)	84, 349
PscI	ACATGT	2 cut(s)	62, 464
PspFI	CCCAGC	1 cut(s)	727
PspN4I	GGNNCC	3 cut(s)	289, 641, 678
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	2 cut(s)	476, 701
RsaI	GTAC	2 cut(s)	67, 303
RsaNI	GTAC	2 cut(s)	66, 302
RseI	CAYNNNNRTG	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	616
SaqAI	TTAA	2 cut(s)	144, 231
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	3 cut(s)	109, 309, 663
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	2 cut(s)	85, 350
ScrFI	CCNGG	1 cut(s)	587
SinI	GGWCC	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	585
TaaI	ACNGT	3 cut(s)	374, 695, 747
TaiI	ACGT	2 cut(s)	144, 160
TaqI	TCGA	3 cut(s)	5, 70, 379
TasI	AATT	1 cut(s)	573
TatI	WGTACW	2 cut(s)	65, 301
TfiI	GAWTC	2 cut(s)	175, 206
Tru1I	TTAA	2 cut(s)	144, 231
Tru9I	TTAA	2 cut(s)	144, 231
TseI	GCWGC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	188, 623
TspGWI	ACGGA	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	288
XceI	RCATGY	3 cut(s)	66, 132, 468
XmnI	GAANNNNTTC	3 cut(s)	179, 205, 625
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.