Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Forward (+)

8310800 .. 8312122

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCGAGCTCGTCGGAAGCCACCGAGATGATGATGAGAATGGCGGAGAAGCCGCCCAGTTTCAGTCAGACTTGTAGCATGCTCTACCAGTTCCTCAAGGAGAAAGGTGCCAACTTGGGAGATCTGAACCTCGACATGCAGCTCCCTAATAATAATGGGAGTGGTGAGATGTTTCACCAGAAGACCCAGCAGCAGATGAATTTTTTTCCGGTCATGGAGAAACCGAGGAACGTGCCGGCTCCGAGTCCGAGGGACTTCAAATCCATGGATTTGTTCCCTCAGCAAGCTGGATTTGGACCCCCTCTGCCCAAGATGACTGATTCTAGTGTGAAGAAGACGGTCCCAGGGGAGCCCCAAAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTGATAGTGTTCGATGATTTTCCGGCTGAGAAGGCAAAGGAGGTGATGCTCTTAGCAAGCAAGGAGAGCTCCAAGAGCCACCACGCTGCTCATGTTTCTGCTCCGGTCAAGGCCAACACCAACTCTGCTTTTGCCTCTCATTTGGGCAAGGTTCCGATCAATTCCGGCACCGGCACCGGCACCGGCACCGGCACGGGCACCGGCACCGCCCCGGTTGCTCCGAGCTCAAACCCTTTCCCCAAGTTCGGCAATCAAGTGATTCAGCAACAGGAGACCATCAAGCCAACCCCGACTCGTCCCATCATTTCTGATATACCAATGCAAAGGAAGGCTTCACTTCAACGCTTCCTGGCGAAGAGGAAGGATAGGATTAACAGCACGGCTCCATACCAAATGAGCAGCCCCAGTCCTTCAGGGCCTGCAAAGCCGGAAGCTGAAAGCAAGTCATGGTTAGGCTTGGCAGCTCAGCCAACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

289

Amino Acids

31.26

Weight (kDa)

9.58

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	117 - 150	1.4e-19	tify domain
Jas_motif	PF09425	236 - 261	2.4e-13	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	7 cut(s)	107, 557, 563, 569, 575, 587, 593
AciI	CCGC	3 cut(s)	44, 53, 597
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	786
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	259, 731
AjnI	CCWGG	2 cut(s)	343, 738
AluBI	AGCT	7 cut(s)	9, 142, 287, 459, 615, 824, 854
AluI	AGCT	7 cut(s)	9, 142, 287, 459, 615, 824, 854
Alw21I	GWGCWC	3 cut(s)	11, 461, 617
Alw26I	GTCTC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	3 cut(s)	360, 501, 806
ApeKI	GCWGC	5 cut(s)	139, 190, 476, 789, 851
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	4 cut(s)	296, 340, 361, 806
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	3 cut(s)	167, 176, 445
AvaII	GGWCC	2 cut(s)	296, 340
BaeGI	GKGCMC	1 cut(s)	590
BanI	GGYRCC	7 cut(s)	107, 557, 563, 569, 575, 587, 593
BanII	GRGCYC	4 cut(s)	11, 354, 461, 617
BbsI	GAAGAC	2 cut(s)	188, 341
Bbv12I	GWGCWC	3 cut(s)	11, 461, 617
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	151, 202, 463, 801, 863
BccI	CCATC	3 cut(s)	380, 674, 698
BceAI	ACGGC	1 cut(s)	786
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	2 cut(s)	345, 740
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	1 cut(s)	324
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	6 cut(s)	53, 140, 191, 477, 790, 852
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	6 cut(s)	54, 141, 192, 478, 791, 853
Bme1390I	CCNGG	3 cut(s)	345, 602, 740
Bme18I	GGWCC	2 cut(s)	296, 340
BmgT120I	GGNCC	4 cut(s)	296, 340, 361, 806
BmrFI	CCNGG	3 cut(s)	345, 602, 740
BmrI	ACTGGG	2 cut(s)	51, 789
BmsI	GCATC	1 cut(s)	426
BmuI	ACTGGG	2 cut(s)	51, 789
BpiI	GAAGAC	2 cut(s)	188, 341
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	6 cut(s)	224, 248, 264, 343, 344, 600
BsaWI	WCCGGW	2 cut(s)	208, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse118I	RCCGGY	6 cut(s)	235, 560, 566, 572, 578, 590
Bse1I	ACTGG	3 cut(s)	57, 88, 795
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	345, 740
BseDI	CCNNGG	6 cut(s)	224, 248, 264, 343, 344, 600
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	3 cut(s)	293, 408, 869
BseNI	ACTGG	3 cut(s)	57, 88, 795
BseSI	GKGCMC	1 cut(s)	590
BseXI	GCAGC	5 cut(s)	151, 202, 463, 801, 863
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	3 cut(s)	362, 503, 808
BshNI	GGYRCC	7 cut(s)	107, 557, 563, 569, 575, 587, 593
BsiHKAI	GWGCWC	3 cut(s)	11, 461, 617
BslFI	GGGAC	3 cut(s)	266, 326, 672
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	3 cut(s)	266, 326, 672
BsnI	GGCC	3 cut(s)	362, 503, 808
Bso31I	GGTCTC	1 cut(s)	656
Bsp1286I	GDGCHC	5 cut(s)	11, 354, 461, 590, 617
Bsp143I	GATC	2 cut(s)	121, 546
Bsp1720I	GCTNAGC	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	44, 53, 597
BspANI	GGCC	3 cut(s)	362, 503, 808
BspCNI	CTCAG	3 cut(s)	292, 409, 868
BspT107I	GGYRCC	7 cut(s)	107, 557, 563, 569, 575, 587, 593
BspTNI	GGTCTC	1 cut(s)	656
BsrFI	RCCGGY	6 cut(s)	235, 560, 566, 572, 578, 590
BsrI	ACTGG	3 cut(s)	57, 88, 795
BssAI	RCCGGY	6 cut(s)	235, 560, 566, 572, 578, 590
BssECI	CCNNGG	6 cut(s)	224, 248, 264, 343, 344, 600
BssMI	GATC	2 cut(s)	121, 546
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	345, 740
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	740
BstC8I	GCNNGC	5 cut(s)	80, 237, 285, 448, 810
BstDEI	CTNAG	5 cut(s)	279, 417, 442, 855, 864
BstDSI	CCRYGG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	124, 549
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	2 cut(s)	121, 546
BstMWI	GCNNNNNNNGC	5 cut(s)	422, 456, 465, 605, 814
BstNI	CCWGG	2 cut(s)	345, 740
BstNSI	RCATGY	2 cut(s)	82, 139
BstSCI	CCNGG	3 cut(s)	343, 600, 738
BstSLI	GKGCMC	1 cut(s)	590
BstV1I	GCAGC	5 cut(s)	151, 202, 463, 801, 863
BstV2I	GAAGAC	2 cut(s)	188, 341
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	362, 503, 808
BtgI	CCRYGG	1 cut(s)	264
Cac8I	GCNNGC	5 cut(s)	80, 237, 285, 448, 810
CaiI	CAGNNNCTG	1 cut(s)	809
Cfr10I	RCCGGY	6 cut(s)	235, 560, 566, 572, 578, 590
Cfr13I	GGNCC	4 cut(s)	296, 340, 361, 806
CviAII	CATG	6 cut(s)	79, 136, 214, 265, 482, 837
DdeI	CTNAG	5 cut(s)	279, 417, 442, 855, 864
DpnI	GATC	2 cut(s)	123, 548
DpnII	GATC	2 cut(s)	121, 546
Eam1104I	CTCTTC	1 cut(s)	740
EarI	CTCTTC	1 cut(s)	740
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	3 cut(s)	9, 459, 615
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	4 cut(s)	11, 354, 461, 617
Eco31I	GGTCTC	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	296, 340
Eco53kI	GAGCTC	3 cut(s)	9, 459, 615
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	3 cut(s)	9, 459, 615
EcoO109I	RGGNCCY	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	343, 738
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	4 cut(s)	11, 354, 461, 617
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	82, 139, 217, 268, 485, 840
FaiI	YATR	9 cut(s)	80, 137, 215, 266, 381, 483, 704, 778, 838
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FaqI	GGGAC	3 cut(s)	266, 326, 672
FatI	CATG	6 cut(s)	78, 135, 213, 264, 481, 836
Fnu4HI	GCNGC	6 cut(s)	53, 140, 191, 477, 790, 852
FriOI	GRGCYC	4 cut(s)	11, 354, 461, 617
Fsp4HI	GCNGC	6 cut(s)	53, 140, 191, 477, 790, 852
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	6 cut(s)	53, 140, 191, 477, 790, 852
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	362, 503, 808
Hin1II	CATG	6 cut(s)	82, 139, 217, 268, 485, 840
HinfI	GANTC	4 cut(s)	244, 320, 649, 682
HphI	GGTGA	3 cut(s)	167, 176, 445
Hpy188I	TCNGA	8 cut(s)	16, 69, 126, 243, 249, 546, 612, 700
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	415, 712, 745, 810
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	139, 712, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	422, 456, 465, 605, 814
HpyF3I	CTNAG	5 cut(s)	279, 417, 442, 855, 864
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	82, 139, 217, 268, 485, 840
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	121, 546
LmnI	GCTCC	7 cut(s)	147, 244, 349, 464, 496, 613, 778
Lsp1109I	GCAGC	5 cut(s)	151, 202, 463, 801, 863
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	123, 548
MboI	GATC	2 cut(s)	121, 546
MboII	GAAGA	5 cut(s)	193, 343, 346, 367, 757
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	5 cut(s)	11, 354, 461, 590, 617
MluCI	AATT	2 cut(s)	199, 550
MlyI	GAGTC	2 cut(s)	253, 676
MnlI	CCTC	9 cut(s)	104, 140, 219, 243, 288, 312, 424, 535, 741
MroNI	GCCGGC	1 cut(s)	235
MseI	TTAA	1 cut(s)	762
MslI	CAYNNNNRTG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	345, 602, 740
MvaI	CCWGG	2 cut(s)	345, 740
MwoI	GCNNNNNNNGC	5 cut(s)	422, 456, 465, 605, 814
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	602
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	121, 546
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	6 cut(s)	82, 139, 217, 268, 485, 840
NspI	RCATGY	2 cut(s)	82, 139
PaeI	GCATGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	320, 649
PkrI	GCNGC	6 cut(s)	54, 141, 192, 478, 791, 853
PleI	GAGTC	2 cut(s)	252, 676
PpsI	GAGTC	2 cut(s)	252, 676
Psp124BI	GAGCTC	3 cut(s)	11, 461, 617
Psp6I	CCWGG	2 cut(s)	343, 738
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	343, 738
PspPI	GGNCC	4 cut(s)	296, 340, 361, 806
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	3 cut(s)	11, 461, 617
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	6 cut(s)	53, 140, 191, 477, 790, 852
Sau3AI	GATC	2 cut(s)	121, 546
Sau96I	GGNCC	4 cut(s)	296, 340, 361, 806
SchI	GAGTC	2 cut(s)	253, 676
ScrFI	CCNGG	3 cut(s)	345, 602, 740
SduI	GDGCHC	5 cut(s)	11, 354, 461, 590, 617
SfaNI	GCATC	1 cut(s)	426
SinI	GGWCC	2 cut(s)	296, 340
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	199, 550
SsiI	CCGC	3 cut(s)	44, 53, 597
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	3 cut(s)	11, 461, 617
StyD4I	CCNGG	3 cut(s)	343, 600, 738
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	5, 132, 402
TasI	AATT	2 cut(s)	199, 550
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	320, 649
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TseI	GCWGC	5 cut(s)	139, 190, 476, 789, 851
TspDTI	ATGAA	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	296, 340
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	2 cut(s)	82, 139
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.