Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006076.1

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Reverse (-)

37057 .. 38361

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006076.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgtcgagctcgtcggaagcaaccgagatgatgatgagaatggcggagaagccgcccagtttcagtcagacttgtagcatgctctaccagttcctcaaggagaaaggtgccaacttgggagatctgaacctcgacatgcagctccctaataataatgggagtggtgagatgtttcgccagaagacccagcagatgaatttttttccggtcatggagaaaccgaggaacgtgccggctctgagtccgagggacttcaaatccatggatttgttccctcagcaagctggatttggacctgctctgcccaagatgactgattctagtgtgaagaagacggtcccaggggagccccaaaaggcccagatgaccatcttctatggtgggcaagtgatagtgttcgatgattttccagctgagaaggcaaaggaggtgatgctcttagcaagcaaggagagctccaagagccaccacgctgctcatggttctgctccggtcaaggccaacaccaactctgcttttgcctctcatttggggaaggttccgatcaattccggcaccggcaccggcaccggcaccgccccggttgctccgagctcaaaccctttccccaagttcggcaatcaagtgattcagcaacaggagaccatcaagccaaccccgactcgtcccatcatttctgatataccaatgcaaaggaaggcttcacttcaacgcttcctggcgaagaggaaggataggattaacagcacggctccataccaaatgagcagccccggtccttcaggccctgcaaagccggaagctgaaagcaagtcatggttaggcttggcagctcagccaactcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

282

Amino Acids

30.59

Weight (kDa)

9.66

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccB1I	GGYRCC	5 cut(s)	107, 554, 560, 566, 572
AciI	CCGC	3 cut(s)	44, 53, 576
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	2 cut(s)	256, 710
AjnI	CCWGG	2 cut(s)	340, 717
AluBI	AGCT	8 cut(s)	9, 142, 284, 413, 456, 594, 803, 833
AluI	AGCT	8 cut(s)	9, 142, 284, 413, 456, 594, 803, 833
Alw21I	GWGCWC	3 cut(s)	11, 458, 596
Alw26I	GTCTC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	357, 498, 784
ApeKI	GCWGC	4 cut(s)	139, 473, 768, 830
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	5 cut(s)	293, 337, 358, 776, 785
AsuC2I	CCSGG	2 cut(s)	581, 774
AsuHPI	GGTGA	2 cut(s)	176, 442
AvaII	GGWCC	3 cut(s)	293, 337, 776
BanI	GGYRCC	5 cut(s)	107, 554, 560, 566, 572
BanII	GRGCYC	4 cut(s)	11, 351, 458, 596
BbsI	GAAGAC	2 cut(s)	188, 338
Bbv12I	GWGCWC	3 cut(s)	11, 458, 596
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	4 cut(s)	151, 460, 780, 842
BccI	CCATC	3 cut(s)	377, 653, 677
BceAI	ACGGC	1 cut(s)	765
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	342, 719
BcnI	CCSGG	2 cut(s)	581, 774
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	5 cut(s)	53, 140, 474, 769, 831
BlpI	GCTNAGC	1 cut(s)	834
BlsI	GCNGC	5 cut(s)	54, 141, 475, 770, 832
Bme1390I	CCNGG	4 cut(s)	342, 581, 719, 774
Bme18I	GGWCC	3 cut(s)	293, 337, 776
BmgT120I	GGNCC	5 cut(s)	293, 337, 358, 776, 785
BmiI	GGNNCC	9 cut(s)	109, 339, 348, 540, 556, 562, 568, 574, 753
BmrFI	CCNGG	4 cut(s)	342, 581, 719, 774
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	188, 338
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	2 cut(s)	581, 774
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	635
BsaJI	CCNNGG	7 cut(s)	221, 245, 261, 340, 341, 579, 772
BsaWI	WCCGGW	2 cut(s)	205, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse118I	RCCGGY	4 cut(s)	232, 557, 563, 569
Bse1I	ACTGG	2 cut(s)	57, 88
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	342, 719
BseDI	CCNNGG	7 cut(s)	221, 245, 261, 340, 341, 579, 772
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMII	CTCAG	4 cut(s)	230, 290, 405, 848
BseNI	ACTGG	2 cut(s)	57, 88
BseXI	GCAGC	4 cut(s)	151, 460, 780, 842
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	3 cut(s)	359, 500, 786
BshNI	GGYRCC	5 cut(s)	107, 554, 560, 566, 572
BsiHKAI	GWGCWC	3 cut(s)	11, 458, 596
BslFI	GGGAC	3 cut(s)	263, 323, 651
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	3 cut(s)	263, 323, 651
BsnI	GGCC	3 cut(s)	359, 500, 786
Bso31I	GGTCTC	1 cut(s)	635
Bsp1286I	GDGCHC	4 cut(s)	11, 351, 458, 596
Bsp143I	GATC	2 cut(s)	121, 543
Bsp1720I	GCTNAGC	1 cut(s)	834
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	3 cut(s)	44, 53, 576
BspANI	GGCC	3 cut(s)	359, 500, 786
BspCNI	CTCAG	4 cut(s)	231, 289, 406, 847
BspLI	GGNNCC	9 cut(s)	109, 339, 348, 540, 556, 562, 568, 574, 753
BspMI	ACCTGC	1 cut(s)	304
BspT107I	GGYRCC	5 cut(s)	107, 554, 560, 566, 572
BspTNI	GGTCTC	1 cut(s)	635
BsrFI	RCCGGY	4 cut(s)	232, 557, 563, 569
BsrI	ACTGG	2 cut(s)	57, 88
BssAI	RCCGGY	4 cut(s)	232, 557, 563, 569
BssECI	CCNNGG	7 cut(s)	221, 245, 261, 340, 341, 579, 772
BssMI	GATC	2 cut(s)	121, 543
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	342, 719
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	80, 234, 282, 445
BstDEI	CTNAG	6 cut(s)	239, 276, 414, 439, 834, 843
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	124, 546
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	121, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 584
BstNI	CCWGG	2 cut(s)	342, 719
BstNSI	RCATGY	2 cut(s)	82, 139
BstSCI	CCNGG	4 cut(s)	340, 579, 717, 772
BstV1I	GCAGC	4 cut(s)	151, 460, 780, 842
BstV2I	GAAGAC	2 cut(s)	188, 338
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	359, 500, 786
BtgI	CCRYGG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	80, 234, 282, 445
CaiI	CAGNNNCTG	1 cut(s)	788
Cfr10I	RCCGGY	4 cut(s)	232, 557, 563, 569
Cfr13I	GGNCC	5 cut(s)	293, 337, 358, 776, 785
CviAII	CATG	6 cut(s)	79, 136, 211, 262, 479, 816
DdeI	CTNAG	6 cut(s)	239, 276, 414, 439, 834, 843
DpnI	GATC	2 cut(s)	123, 545
DpnII	GATC	2 cut(s)	121, 543
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	3 cut(s)	9, 456, 594
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	4 cut(s)	11, 351, 458, 596
Eco31I	GGTCTC	1 cut(s)	635
Eco47I	GGWCC	3 cut(s)	293, 337, 776
Eco53kI	GAGCTC	3 cut(s)	9, 456, 594
Eco57I	CTGAAG	1 cut(s)	765
EcoICRI	GAGCTC	3 cut(s)	9, 456, 594
EcoO109I	RGGNCCY	1 cut(s)	785
EcoRII	CCWGG	2 cut(s)	340, 717
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	4 cut(s)	11, 351, 458, 596
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	6 cut(s)	82, 139, 214, 265, 482, 819
FaiI	YATR	9 cut(s)	80, 137, 212, 263, 378, 480, 683, 757, 817
FalI	AAGNNNNNCTT	2 cut(s)	685, 717
FaqI	GGGAC	3 cut(s)	263, 323, 651
FatI	CATG	6 cut(s)	78, 135, 210, 261, 478, 815
Fnu4HI	GCNGC	5 cut(s)	53, 140, 474, 769, 831
FriOI	GRGCYC	4 cut(s)	11, 351, 458, 596
Fsp4HI	GCNGC	5 cut(s)	53, 140, 474, 769, 831
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	5 cut(s)	53, 140, 474, 769, 831
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	359, 500, 786
Hin1II	CATG	6 cut(s)	82, 139, 214, 265, 482, 819
HinfI	GANTC	4 cut(s)	241, 317, 628, 661
HphI	GGTGA	2 cut(s)	176, 442
Hpy188I	TCNGA	8 cut(s)	16, 69, 126, 240, 246, 543, 591, 679
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	412, 529, 691, 724, 789
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	139, 691, 791
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 584
HpyF3I	CTNAG	6 cut(s)	239, 276, 414, 439, 834, 843
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	82, 139, 214, 265, 482, 819
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	121, 543
LmnI	GCTCC	6 cut(s)	147, 346, 461, 493, 592, 757
Lsp1109I	GCAGC	4 cut(s)	151, 460, 780, 842
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	123, 545
MboI	GATC	2 cut(s)	121, 543
MboII	GAAGA	5 cut(s)	193, 340, 343, 364, 736
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	4 cut(s)	11, 351, 458, 596
MluCI	AATT	2 cut(s)	196, 547
MlyI	GAGTC	2 cut(s)	250, 655
MnlI	CCTC	8 cut(s)	104, 140, 216, 240, 285, 421, 532, 720
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	4 cut(s)	342, 581, 719, 774
MvaI	CCWGG	2 cut(s)	342, 719
MwoI	GCNNNNNNNGC	4 cut(s)	419, 453, 462, 584
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	2 cut(s)	581, 774
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	121, 543
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	6 cut(s)	82, 139, 214, 265, 482, 819
NlaIV	GGNNCC	9 cut(s)	109, 339, 348, 540, 556, 562, 568, 574, 753
NspI	RCATGY	2 cut(s)	82, 139
PaeI	GCATGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	341
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	317, 628
PkrI	GCNGC	5 cut(s)	54, 141, 475, 770, 832
PleI	GAGTC	2 cut(s)	249, 655
PpsI	GAGTC	2 cut(s)	249, 655
Psp124BI	GAGCTC	3 cut(s)	11, 458, 596
Psp6I	CCWGG	2 cut(s)	340, 717
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	340, 717
PspN4I	GGNNCC	9 cut(s)	109, 339, 348, 540, 556, 562, 568, 574, 753
PspPI	GGNCC	5 cut(s)	293, 337, 358, 776, 785
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	413
SacI	GAGCTC	3 cut(s)	11, 458, 596
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	5 cut(s)	53, 140, 474, 769, 831
Sau3AI	GATC	2 cut(s)	121, 543
Sau96I	GGNCC	5 cut(s)	293, 337, 358, 776, 785
SchI	GAGTC	2 cut(s)	250, 655
ScrFI	CCNGG	4 cut(s)	342, 581, 719, 774
SduI	GDGCHC	4 cut(s)	11, 351, 458, 596
SfaNI	GCATC	1 cut(s)	423
SinI	GGWCC	3 cut(s)	293, 337, 776
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	196, 547
SsiI	CCGC	3 cut(s)	44, 53, 576
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	3 cut(s)	11, 458, 596
StyD4I	CCNGG	4 cut(s)	340, 579, 717, 772
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	5, 132, 399
TasI	AATT	2 cut(s)	196, 547
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	317, 628
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TseI	GCWGC	4 cut(s)	139, 473, 768, 830
TspDTI	ATGAA	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	293, 337, 776
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	2 cut(s)	82, 139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.