Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007864

Physical Location & Seq

Genomic Coordinates Reverse (-)

84224677 .. 84226378

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCGAGCTCGTCGGAAACAACCGAGATGATGATGAGAATGGGGGAGAAGCCGCCCAGTTTCAGTCAGACTTGTAGCATGCTCTACCAGTTCCTCAAGGAGAAAGGTGCCAACTTGGGAGATCTGAACCTCGACATGCAGCTCCCTAATAATAATGGGAGTGGTGAGATGTTTCGGCAGAAGACCCAGCAGATGAATTTTTTTCCGGTCATGGAGAAACCGAGGAACGTGCCGGCTCCGAGGGACTTCAAATCCATGGATTTGTTCCCTCAGCAAGCTGGATTTGGGCCTCCTCTGCCCAAGATGACTGATTCTAGGTATGCCCAAATCCACTATCTTCAAATTCAAGCCAATGATGTGTGTGTGAAGAAGACGGTCCCAGGGGAGCCCCAAAAGGCCCAGATGACCATCTTCTATGGTGGGCAAGTGATAGTGTTCGATGATTTTCCAGCTGAGAAGGCAAAGGAGGTGATGCTCTTAGCAAGCAAGGAAAGCTCCAAGAGCCACCACGCTGCTCATGTTTCTGCTCCGGTCAAGGGCAACACCAACTCTGCTTTTGCCACTCATTTGGAGAAGGTTCCGATCAATTCCGGCACCGGCACCGGCACCGGAGCGGGCACCGGTACCGGCACCGTCCCGGTTCCTCCGAGCCCAAACCCTTTCCCCAAGTTTGGCAATCAAGTGATTCAGCAACAGGAGACCATCAAGCCAACCCCGACTCGTCCCATCATTTCTGATATACCAATGCAAAGGAAGGCTTCACTTCAACGCTTCCTGGCAAAGAGGAAGGATAGGATTAACAGCACGGCTCCATACCAAATGAGCAGCCCTGGTCCTTCCGGCCCCGCAAAGCCGGAAGCTGAAAGCAAGACTTGGTTAGGCTTGGCAGCTCAGCCAACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

301

Amino Acids

32.9

Weight (kDa)

9.48

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	129 - 162	1.5e-19	tify domain
Jas_motif	PF09425	248 - 273	2.6e-13	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19180 AT1G19180 AT1G19180 AT1G74950 AT1G74950
fragaria_vesca	FvH4_1g09070 FvH4_1g09070 FvH4_1g09070
malus_domestica	MD02G1096100.v1.1 MD15G1220400.v1.1
prunus_persica	Prupe.7G194800_v2.0.a1 Prupe.7G194800_v2.0.a1
pyrus_communis	pycom02g07590 pycom15g19540
rosa_chinensis	RchiOBHm_Chr2g0095481
rosa_laevigata	RLG00000016571
rosa_multiflora	Rmu_sc0006076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146290
rosa_rugosa	Rorug02G0051500
rosa_samantha	Rh2AG099500 Rh2BG100800 Rh2CG103000 Rh2DG100400
rosa_wichuraiana	Rw2G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	623
AccB1I	GGYRCC	7 cut(s)	107, 593, 599, 605, 617, 623, 629
AccBSI	CCGCTC	1 cut(s)	614
AciI	CCGC	3 cut(s)	53, 614, 846
AcsI	RAATTY	2 cut(s)	196, 342
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	2 cut(s)	536, 671
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	4 cut(s)	250, 341, 347, 767
AjnI	CCWGG	3 cut(s)	379, 774, 829
AluBI	AGCT	7 cut(s)	9, 142, 278, 452, 495, 860, 890
AluI	AGCT	7 cut(s)	9, 142, 278, 452, 495, 860, 890
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	692
AoxI	GGCC	3 cut(s)	287, 396, 841
ApeKI	GCWGC	4 cut(s)	139, 512, 825, 887
ApoI	RAATTY	2 cut(s)	196, 342
AsiGI	ACCGGT	1 cut(s)	620
Asp718I	GGTACC	1 cut(s)	623
AspS9I	GGNCC	5 cut(s)	287, 376, 397, 833, 842
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	2 cut(s)	176, 481
AvaII	GGWCC	2 cut(s)	376, 833
BaeGI	GKGCMC	1 cut(s)	620
BanI	GGYRCC	7 cut(s)	107, 593, 599, 605, 617, 623, 629
BanII	GRGCYC	3 cut(s)	11, 390, 653
BbsI	GAAGAC	2 cut(s)	188, 377
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	151, 499, 837, 899
BccI	CCATC	3 cut(s)	416, 710, 734
BceAI	ACGGC	1 cut(s)	822
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	3 cut(s)	381, 776, 831
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	1 cut(s)	315
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	5 cut(s)	53, 140, 513, 826, 888
BlpI	GCTNAGC	1 cut(s)	891
BlsI	GCNGC	5 cut(s)	54, 141, 514, 827, 889
Bme1390I	CCNGG	4 cut(s)	381, 638, 776, 831
Bme18I	GGWCC	2 cut(s)	376, 833
BmgT120I	GGNCC	5 cut(s)	287, 376, 397, 833, 842
BmrFI	CCNGG	4 cut(s)	381, 638, 776, 831
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	188, 377
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	638
BsaBI	GATNNNNATC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	6 cut(s)	221, 239, 255, 379, 380, 829
BsaWI	WCCGGW	4 cut(s)	205, 529, 608, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 671
Bse118I	RCCGGY	5 cut(s)	232, 596, 602, 620, 626
Bse1I	ACTGG	2 cut(s)	57, 88
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	3 cut(s)	381, 776, 831
BseDI	CCNNGG	6 cut(s)	221, 239, 255, 379, 380, 829
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	536, 671
BseMII	CTCAG	3 cut(s)	284, 444, 905
BseNI	ACTGG	2 cut(s)	57, 88
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	4 cut(s)	151, 499, 837, 899
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	3 cut(s)	289, 398, 843
BshNI	GGYRCC	7 cut(s)	107, 593, 599, 605, 617, 623, 629
BshTI	ACCGGT	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	11
BslFI	GGGAC	4 cut(s)	257, 362, 620, 708
BslI	CCNNNNNNNGG	2 cut(s)	536, 671
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	4 cut(s)	257, 362, 620, 708
BsnI	GGCC	3 cut(s)	289, 398, 843
Bso31I	GGTCTC	1 cut(s)	692
Bsp1286I	GDGCHC	4 cut(s)	11, 390, 620, 653
Bsp143I	GATC	2 cut(s)	121, 582
Bsp1720I	GCTNAGC	1 cut(s)	891
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	3 cut(s)	53, 614, 846
BspANI	GGCC	3 cut(s)	289, 398, 843
BspCNI	CTCAG	3 cut(s)	283, 445, 904
BspT107I	GGYRCC	7 cut(s)	107, 593, 599, 605, 617, 623, 629
BspTNI	GGTCTC	1 cut(s)	692
BsrBI	CCGCTC	1 cut(s)	614
BsrFI	RCCGGY	5 cut(s)	232, 596, 602, 620, 626
BsrI	ACTGG	2 cut(s)	57, 88
BssAI	RCCGGY	5 cut(s)	232, 596, 602, 620, 626
BssECI	CCNNGG	6 cut(s)	221, 239, 255, 379, 380, 829
BssMI	GATC	2 cut(s)	121, 582
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	3 cut(s)	381, 776, 831
Bst4CI	ACNGT	2 cut(s)	376, 634
BstC8I	GCNNGC	5 cut(s)	80, 234, 276, 484, 616
BstDEI	CTNAG	5 cut(s)	270, 453, 478, 891, 900
BstDSI	CCRYGG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	124, 585
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	2 cut(s)	121, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	295, 458, 492, 501
BstNI	CCWGG	3 cut(s)	381, 776, 831
BstNSI	RCATGY	2 cut(s)	82, 139
BstSCI	CCNGG	4 cut(s)	379, 636, 774, 829
BstSLI	GKGCMC	1 cut(s)	620
BstV1I	GCAGC	4 cut(s)	151, 499, 837, 899
BstV2I	GAAGAC	2 cut(s)	188, 377
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	289, 398, 843
BtgI	CCRYGG	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	80, 234, 276, 484, 616
Cfr10I	RCCGGY	5 cut(s)	232, 596, 602, 620, 626
Cfr13I	GGNCC	5 cut(s)	287, 376, 397, 833, 842
Csp6I	GTAC	1 cut(s)	624
CspAI	ACCGGT	1 cut(s)	620
CviAII	CATG	5 cut(s)	79, 136, 211, 256, 518
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	5 cut(s)	270, 453, 478, 891, 900
DpnI	GATC	2 cut(s)	123, 584
DpnII	GATC	2 cut(s)	121, 582
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	3 cut(s)	11, 390, 653
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	2 cut(s)	376, 833
Eco53kI	GAGCTC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	9
EcoRII	CCWGG	3 cut(s)	379, 774, 829
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	3 cut(s)	11, 390, 653
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	5 cut(s)	82, 139, 214, 259, 521
FaiI	YATR	9 cut(s)	80, 137, 212, 257, 321, 417, 519, 740, 814
FalI	AAGNNNNNCTT	4 cut(s)	742, 774, 856, 888
FaqI	GGGAC	4 cut(s)	257, 362, 620, 708
FatI	CATG	5 cut(s)	78, 135, 210, 255, 517
FauI	CCCGC	2 cut(s)	607, 853
Fnu4HI	GCNGC	5 cut(s)	53, 140, 513, 826, 888
FriOI	GRGCYC	3 cut(s)	11, 390, 653
Fsp4HI	GCNGC	5 cut(s)	53, 140, 513, 826, 888
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	5 cut(s)	53, 140, 513, 826, 888
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	289, 398, 843
Hin1II	CATG	5 cut(s)	82, 139, 214, 259, 521
HinfI	GANTC	3 cut(s)	311, 685, 718
HphI	GGTGA	2 cut(s)	176, 481
Hpy188I	TCNGA	7 cut(s)	16, 69, 126, 240, 582, 648, 736
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	451, 568, 748, 781, 846
HpyCH4III	ACNGT	2 cut(s)	376, 634
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	139, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	295, 458, 492, 501
HpyF3I	CTNAG	5 cut(s)	270, 453, 478, 891, 900
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	82, 139, 214, 259, 521
KpnI	GGTACC	1 cut(s)	627
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	121, 582
LmnI	GCTCC	7 cut(s)	147, 241, 385, 500, 532, 611, 814
Lsp1109I	GCAGC	4 cut(s)	151, 499, 837, 899
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	123, 584
MbiI	CCGCTC	1 cut(s)	614
MboI	GATC	2 cut(s)	121, 582
MboII	GAAGA	5 cut(s)	193, 329, 379, 382, 403
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	4 cut(s)	11, 390, 620, 653
MluCI	AATT	3 cut(s)	196, 342, 586
MlyI	GAGTC	1 cut(s)	712
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	798
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	4 cut(s)	381, 638, 776, 831
MvaI	CCWGG	3 cut(s)	381, 776, 831
MwoI	GCNNNNNNNGC	4 cut(s)	295, 458, 492, 501
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	638
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	121, 582
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	5 cut(s)	82, 139, 214, 259, 521
NspI	RCATGY	2 cut(s)	82, 139
PaeI	GCATGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	380
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	311, 685
PinAI	ACCGGT	1 cut(s)	620
PkrI	GCNGC	5 cut(s)	54, 141, 514, 827, 889
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	3 cut(s)	379, 774, 829
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	3 cut(s)	379, 774, 829
PspPI	GGNCC	5 cut(s)	287, 376, 397, 833, 842
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	798
SatI	GCNGC	5 cut(s)	53, 140, 513, 826, 888
Sau3AI	GATC	2 cut(s)	121, 582
Sau96I	GGNCC	5 cut(s)	287, 376, 397, 833, 842
SchI	GAGTC	1 cut(s)	712
ScrFI	CCNGG	4 cut(s)	381, 638, 776, 831
SduI	GDGCHC	4 cut(s)	11, 390, 620, 653
SfaNI	GCATC	1 cut(s)	462
SinI	GGWCC	2 cut(s)	376, 833
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	3 cut(s)	196, 342, 586
SsiI	CCGC	3 cut(s)	53, 614, 846
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	4 cut(s)	379, 636, 774, 829
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	376, 634
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	5, 132, 438
TasI	AATT	3 cut(s)	196, 342, 586
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	311, 685
Tru1I	TTAA	1 cut(s)	798
Tru9I	TTAA	1 cut(s)	798
TseI	GCWGC	4 cut(s)	139, 512, 825, 887
TspDTI	ATGAA	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	376, 833
XapI	RAATTY	2 cut(s)	196, 342
XceI	RCATGY	2 cut(s)	82, 139
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.