Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

3948477 .. 3955030

Gene Structure 6554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGCCAGATTTAAGAAGTGGAGTTCGGCGATCAAAGAGGATCAACAATGTCCAGGAAAATCCTGCTGTTTTAGTTCCAGCTGCACGGACTGGTGCAGGAAAAGGGTTGACTGGTAGAGGTAGGGGTAGAGGGTCTAGAGCCATGAATCAAGGTAAGAATTCCAAGCTGTTTGGTGCTGGAGTTGGTGGCCAAGGGAATGCAGGTTTGGATTTACCAAAAAGAGATTTGGTGGCGGTTCACGATGAATTGGTAGATCAGAAAGGTGCACAAAAATTGACTGCTATTGAGGATGAAGGGAGCAGTAGTCCACTTCCCGAAAGAGTACAGATTGGAAACTCCCCCATGTACAAGTTGGATAGAAAGCTGGGGAAAGGGGGCTTTGGACAAGTTTATGTAGGAAGAAGGGTGACAGGAGGATATGGGGGCTCTGGGCCTGAGGCCATTGAGGTTGCTTTAAAGCTTGAGGGTCGAAACAGTAAAGGGTGCAGTCATGGCCCTCCTTATGAGTGGCAAGTATACAGTTCCCTTAATGGATGTTACGGAGTTCCCCACGTTCATTACAAAGGTCAACAAGGAGAATACTATATCCTGGTCATGGATATGCTAGGCCCCAGTTTATGGGATGTTTGGAATCGCAATCAGTTGCTGTCTGAAGAGATGGTTGCTTGTATAGCGGTGGAGGCAATCTCAATTCTAGAGCAGCTTCATATCAAAGGTTTTGTGCATGGAGACGTTAAGCCAGAAAACTTTTTGCTTGGTCAACCTGGAACAGCCAATGATAAGAAGTTATATCTTGTTGACCTTGGTTTGGCTTCAAGATGGAAGGAAACATCTGGACGTCATGTTGATTATGATCAAAAACCTGATGTTTTCAGGGGAACTGTTCGTTATGCAAGTGTACATGCTCATTTAGGCAGGACAGGGAGCCGAAGGGATGACCTTGAGTCATTAGCTTATACCCTTATATTTCTCCTTAGAGGCAAACTTCCCTGGCAAGGTTACAATGGGGAAAACAAAGGATTTCTTGTCTGCAAGAAGAAGATGGCAACTTCTCCTGAGATGCTATGTGGCTCATGTCCTCCTCCTTTTCAACAGTTTCTTGAGTTGGTGACCAATATGAAATTCGATGAAGAACCAAATTACTTAAAACTAATTTCTCTGTTTGATAACAACATTAATGTGAATGCTGCTCTTCGACCTATAAGAACTGATGGAGCTGCAAAGGTGGGCCAAAAAAGGGGAAGGTTGTTTCTTGAATCAGAAGATAGTGAGCAACCCAGGAAAAAAGTTAGATTAGGTTGCCCAGCCAATCAGTGGATCTCAGTCTATAATACCAGACCGTCGATGAAGCAAAGGTATCATTACAATGTTATGGACGTGAGAGTGGACCAGCACATTGACAAAGGAAAGGAAGATGGTTTGTATATTAGCTGTGTCGCTTCATCTGCGAATATGTGGGCTATAGTCATGGATGCAGGGACAGGTTTCACATCCCAAGTTTATGAATTATCTCCTGTTTTCTTGCACAAGGAGTGGATAATGGAACAGTGGGACAAGAACTACTATATCACTTCACTTGCTGGCGCAGGCAATGGCAGTGCCCTGGTGGTAATGTCCCAAGGCGTACCTTATACTCAGCAGTCGTACAAAGTCAGTGACGTATTCCCTTTCAAATGGATTAATAAGAAATGGAAAGAAGGTTTCTCTGTTACCTCCATGACTACTGCAGGTAGCAGATGGGGCATTGTCATGTCCAGAAATGCAGGTTATTCTAATCAGGTTGTTGAGATTGATTTCCTATATCCGAGCGAAGGCATCCATAGAAGATGGGAGAATGGATATCGTATTACCTCAACTGCTGCGACAGAGGATCAAGCTGCATTCATACTTAGTTCACCCAAGAAGAAATCACAAGATGTGGCTCAGGAAACTCTACGGACATCTGTTTTTCCAACTACGCATGTCAAGGAAAAATGGTTGAAGAATCTATATATTGCATCCATCTGCTATGGGAGAACAGTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

675

Amino Acids

75.14

Weight (kDa)

9.28

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	116 - 346	2.4e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	117 - 344	1.7e-06	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	196 - 323	1.5e-08	Fungal protein kinase
DUF7477	PF24289	408 - 675	2.7e-154	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	841
Acc36I	ACCTGC	3 cut(s)	191, 1718, 1754
AccB7I	CCANNNNNTGG	2 cut(s)	618, 1314
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	2 cut(s)	233, 674
AclWI	GGATC	3 cut(s)	47, 1325, 1878
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	157, 1121
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	838
AfaI	GTAC	5 cut(s)	324, 347, 900, 1626, 1646
AfiI	CCNNNNNNNGG	7 cut(s)	595, 618, 808, 995, 1237, 1314, 1811
AgsI	TTSAA	5 cut(s)	816, 1091, 1256, 1672, 1981
AhdI	GACNNNNNGTC	1 cut(s)	943
AjiI	CACGTC	1 cut(s)	1378
AjnI	CCWGG	6 cut(s)	51, 588, 763, 989, 1277, 1602
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 1106, 1138
AluBI	AGCT	9 cut(s)	80, 166, 364, 460, 703, 953, 1217, 1431, 1877
AluI	AGCT	9 cut(s)	80, 166, 364, 460, 703, 953, 1217, 1431, 1877
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	723
Alw44I	GTGCAC	1 cut(s)	264
AlwI	GGATC	3 cut(s)	47, 1325, 1878
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	6 cut(s)	187, 431, 438, 493, 607, 1228
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	6 cut(s)	80, 700, 1187, 1217, 1859, 1877
ApoI	RAATTY	2 cut(s)	157, 1121
AseI	ATTAAT	2 cut(s)	1176, 1680
AspLEI	GCGC	1 cut(s)	1586
AspS9I	GGNCC	5 cut(s)	431, 494, 608, 1228, 1387
AsuHPI	GGTGA	3 cut(s)	418, 1120, 1887
AvaII	GGWCC	1 cut(s)	1387
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	2 cut(s)	268, 1603
BalI	TGGCCA	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	6 cut(s)	67, 712, 1174, 1204, 1846, 1864
BccI	CCATC	8 cut(s)	652, 813, 1036, 1205, 1409, 1731, 1821, 2009
BciT130I	CCWGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
BclI	TGATCA	1 cut(s)	853
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	3 cut(s)	135, 605, 695
BfmI	CTRYAG	2 cut(s)	1461, 1725
BfuAI	ACCTGC	3 cut(s)	191, 1718, 1754
BisI	GCNGC	6 cut(s)	81, 701, 1188, 1218, 1860, 1878
BlsI	GCNGC	6 cut(s)	82, 702, 1189, 1219, 1861, 1879
Bme1390I	CCNGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
Bme18I	GGWCC	1 cut(s)	1387
BmeRI	GACNNNNNGTC	1 cut(s)	943
BmgBI	CACGTC	1 cut(s)	1378
BmgT120I	GGNCC	5 cut(s)	431, 494, 608, 1228, 1387
BmiI	GGNNCC	2 cut(s)	610, 926
BmrFI	CCNGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	4 cut(s)	1050, 1462, 1824, 2006
BmuI	ACTGGG	1 cut(s)	606
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	1923
BpuEI	CTTGAG	3 cut(s)	482, 962, 1121
BsaBI	GATNNNNATC	1 cut(s)	852
BsaHI	GRCGYC	1 cut(s)	838
BsaJI	CCNNGG	6 cut(s)	190, 802, 989, 1277, 1602, 1618
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	7 cut(s)	595, 618, 808, 995, 1237, 1314, 1811
Bse1I	ACTGG	3 cut(s)	94, 115, 612
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	1597
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
BseDI	CCNNGG	6 cut(s)	190, 802, 989, 1277, 1602, 1618
BseGI	GGATG	8 cut(s)	295, 539, 628, 940, 1477, 1490, 1815, 1997
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	7 cut(s)	595, 618, 808, 995, 1237, 1314, 1811
BseMI	GCAATG	1 cut(s)	1597
BseMII	CTCAG	5 cut(s)	426, 1047, 1335, 1649, 1937
BseNI	ACTGG	3 cut(s)	94, 115, 612
BseRI	GAGGAG	1 cut(s)	1071
BseSI	GKGCMC	2 cut(s)	268, 1603
BseXI	GCAGC	6 cut(s)	67, 712, 1174, 1204, 1846, 1864
BseYI	CCCAGC	2 cut(s)	364, 1303
BsgI	GTGCAG	3 cut(s)	66, 114, 505
BshFI	GGCC	6 cut(s)	189, 433, 440, 495, 609, 1230
BsiHKAI	GWGCWC	1 cut(s)	268
BslFI	GGGAC	3 cut(s)	1492, 1565, 1600
BslI	CCNNNNNNNGG	7 cut(s)	595, 618, 808, 995, 1237, 1314, 1811
BsmAI	GTCTC	1 cut(s)	723
BsmBI	CGTCTC	1 cut(s)	723
BsmFI	GGGAC	3 cut(s)	1492, 1565, 1600
BsmI	GAATGC	3 cut(s)	202, 1189, 1880
BsnI	GGCC	6 cut(s)	189, 433, 440, 495, 609, 1230
Bsp1286I	GDGCHC	3 cut(s)	268, 428, 1603
Bsp1407I	TGTACA	2 cut(s)	345, 898
Bsp143I	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
BspACI	CCGC	2 cut(s)	233, 674
BspANI	GGCC	6 cut(s)	189, 433, 440, 495, 609, 1230
BspCNI	CTCAG	5 cut(s)	427, 1048, 1334, 1648, 1936
BspHI	TCATGA	1 cut(s)	2024
BspLI	GGNNCC	2 cut(s)	610, 926
BspMAI	CTGCAG	1 cut(s)	1729
BspMI	ACCTGC	3 cut(s)	191, 1718, 1754
BspPI	GGATC	3 cut(s)	47, 1325, 1878
BspQI	GCTCTTC	1 cut(s)	1197
BsrDI	GCAATG	1 cut(s)	1597
BsrGI	TGTACA	2 cut(s)	345, 898
BsrI	ACTGG	3 cut(s)	94, 115, 612
BssECI	CCNNGG	6 cut(s)	190, 802, 989, 1277, 1602, 1618
BssMI	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
BssNAI	GTATAC	1 cut(s)	517
BssNI	GRCGYC	1 cut(s)	838
BssT1I	CCWWGG	3 cut(s)	190, 802, 1618
Bst1107I	GTATAC	1 cut(s)	517
Bst2UI	CCWGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
Bst4CI	ACNGT	7 cut(s)	476, 521, 883, 1095, 1341, 1548, 2020
Bst6I	CTCTTC	2 cut(s)	648, 1197
BstACI	GRCGYC	1 cut(s)	838
BstAUI	TGTACA	2 cut(s)	345, 898
BstC8I	GCNNGC	2 cut(s)	1582, 1588
BstDEI	CTNAG	7 cut(s)	435, 974, 1056, 1321, 1635, 1889, 1923
BstEII	GGTNACC	1 cut(s)	1108
BstF5I	GGATG	8 cut(s)	295, 539, 628, 940, 1477, 1490, 1815, 1997
BstHHI	GCGC	1 cut(s)	1586
BstKTI	GATC	6 cut(s)	32, 42, 256, 856, 1320, 1873
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
BstMWI	GCNNNNNNNGC	5 cut(s)	492, 671, 680, 1445, 1740
BstNI	CCWGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
BstNSI	RCATGY	2 cut(s)	905, 1964
BstPI	GGTNACC	1 cut(s)	1108
BstSCI	CCNGG	6 cut(s)	51, 588, 763, 989, 1277, 1602
BstSFI	CTRYAG	2 cut(s)	1461, 1725
BstSLI	GKGCMC	2 cut(s)	268, 1603
BstV1I	GCAGC	6 cut(s)	67, 712, 1174, 1204, 1846, 1864
BstX2I	RGATCY	1 cut(s)	1317
BstYI	RGATCY	1 cut(s)	1317
BstZ17I	GTATAC	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	6 cut(s)	189, 433, 440, 495, 609, 1230
BtrI	CACGTC	1 cut(s)	1378
BtsCI	GGATG	8 cut(s)	295, 539, 628, 940, 1477, 1490, 1815, 1997
BtsI	GCAGTG	1 cut(s)	1603
BtsIMutI	CAGTG	4 cut(s)	1319, 1553, 1603, 1660
BveI	ACCTGC	3 cut(s)	191, 1718, 1754
Cac8I	GCNNGC	2 cut(s)	1582, 1588
CaiI	CAGNNNCTG	1 cut(s)	646
CciI	TCATGA	1 cut(s)	2024
CfoI	GCGC	1 cut(s)	1586
Cfr13I	GGNCC	5 cut(s)	431, 494, 608, 1228, 1387
Csp6I	GTAC	5 cut(s)	323, 346, 899, 1625, 1645
CviQI	GTAC	5 cut(s)	323, 346, 899, 1625, 1645
DdeI	CTNAG	7 cut(s)	435, 974, 1056, 1321, 1635, 1889, 1923
DpnI	GATC	6 cut(s)	31, 41, 255, 855, 1319, 1872
DpnII	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
DraI	TTTAAA	1 cut(s)	456
DriI	GACNNNNNGTC	1 cut(s)	943
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	648, 1197
Eam1105I	GACNNNNNGTC	1 cut(s)	943
EarI	CTCTTC	2 cut(s)	648, 1197
Eco130I	CCWWGG	3 cut(s)	190, 802, 1618
Eco24I	GRGCYC	1 cut(s)	428
Eco32I	GATATC	1 cut(s)	1841
Eco47I	GGWCC	1 cut(s)	1387
Eco57I	CTGAAG	1 cut(s)	672
Eco81I	CCTNAGG	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	1108
EcoO109I	RGGNCCY	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	1108
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	6 cut(s)	51, 588, 763, 989, 1277, 1602
EcoRV	GATATC	1 cut(s)	1841
EcoT14I	CCWWGG	3 cut(s)	190, 802, 1618
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	3 cut(s)	190, 802, 1618
Esp3I	CGTCTC	1 cut(s)	723
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FaqI	GGGAC	3 cut(s)	1492, 1565, 1600
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	6 cut(s)	81, 701, 1188, 1218, 1860, 1878
FokI	GGATG	8 cut(s)	302, 546, 635, 947, 1477, 1484, 1802, 1984
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	6 cut(s)	81, 701, 1188, 1218, 1860, 1878
FspBI	CTAG	3 cut(s)	135, 605, 695
GlaI	GCGC	1 cut(s)	1585
GluI	GCNGC	6 cut(s)	81, 701, 1188, 1218, 1860, 1878
GsaI	CCCAGC	2 cut(s)	368, 1307
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	6 cut(s)	189, 433, 440, 495, 609, 1230
HhaI	GCGC	1 cut(s)	1586
Hin1I	GRCGYC	1 cut(s)	838
Hin6I	GCGC	1 cut(s)	1584
HinP1I	GCGC	1 cut(s)	1584
HincII	GTYRAC	4 cut(s)	108, 569, 761, 799
HindII	GTYRAC	4 cut(s)	108, 569, 761, 799
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	5 cut(s)	145, 631, 944, 1256, 1984
HphI	GGTGA	3 cut(s)	418, 1120, 1887
Hpy188I	TCNGA	4 cut(s)	258, 652, 1261, 1806
Hpy99I	CGWCG	1 cut(s)	1345
HpyAV	CCTTC	7 cut(s)	287, 396, 817, 924, 1236, 1691, 1805
HpyCH4III	ACNGT	7 cut(s)	476, 521, 883, 1095, 1341, 1548, 2020
HpyCH4IV	ACGT	5 cut(s)	552, 732, 838, 1377, 1659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	492, 671, 680, 1445, 1740
HpyF3I	CTNAG	7 cut(s)	435, 974, 1056, 1321, 1635, 1889, 1923
HpySE526I	ACGT	5 cut(s)	552, 732, 838, 1377, 1659
Hsp92I	GRCGYC	1 cut(s)	838
HspAI	GCGC	1 cut(s)	1584
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
LguI	GCTCTTC	1 cut(s)	1197
LmnI	GCTCC	3 cut(s)	297, 924, 1214
Lsp1109I	GCAGC	6 cut(s)	67, 712, 1174, 1204, 1846, 1864
LweI	GCATC	4 cut(s)	1050, 1462, 1824, 2006
MaeI	CTAG	3 cut(s)	135, 605, 695
MaeII	ACGT	5 cut(s)	552, 732, 838, 1377, 1659
MaeIII	GTNAC	6 cut(s)	406, 536, 998, 1108, 1655, 1708
MalI	GATC	6 cut(s)	31, 41, 255, 855, 1319, 1872
MboI	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
MflI	RGATCY	1 cut(s)	1317
MhlI	GDGCHC	3 cut(s)	268, 428, 1603
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	8 cut(s)	157, 245, 272, 690, 1121, 1138, 1152, 1505
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	2 cut(s)	333, 1976
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	7 cut(s)	11, 455, 528, 735, 1145, 1176, 1680
MslI	CAYNNNNRTG	4 cut(s)	599, 1178, 1365, 1748
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
Mva1269I	GAATGC	3 cut(s)	202, 1189, 1880
MvaI	CCWGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
MwoI	GCNNNNNNNGC	5 cut(s)	492, 671, 680, 1445, 1740
NdeII	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
NlaIV	GGNNCC	2 cut(s)	610, 926
NmuCI	GTSAC	3 cut(s)	406, 1108, 1655
NspI	RCATGY	2 cut(s)	905, 1964
PagI	TCATGA	1 cut(s)	2024
PciSI	GCTCTTC	1 cut(s)	1197
PctI	GAATGC	3 cut(s)	202, 1189, 1880
PfeI	GAWTC	4 cut(s)	145, 631, 1256, 1984
PflMI	CCANNNNNTGG	2 cut(s)	618, 1314
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	6 cut(s)	82, 702, 1189, 1219, 1861, 1879
PleI	GAGTC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	952
PshBI	ATTAAT	2 cut(s)	1176, 1680
Psp6I	CCWGG	6 cut(s)	51, 588, 763, 989, 1277, 1602
PspEI	GGTNACC	1 cut(s)	1108
PspFI	CCCAGC	2 cut(s)	364, 1303
PspGI	CCWGG	6 cut(s)	51, 588, 763, 989, 1277, 1602
PspN4I	GGNNCC	2 cut(s)	610, 926
PspPI	GGNCC	5 cut(s)	431, 494, 608, 1228, 1387
PstI	CTGCAG	1 cut(s)	1729
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	1317
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	5 cut(s)	324, 347, 900, 1626, 1646
RsaNI	GTAC	5 cut(s)	323, 346, 899, 1625, 1645
RseI	CAYNNNNRTG	4 cut(s)	599, 1178, 1365, 1748
SapI	GCTCTTC	1 cut(s)	1197
SaqAI	TTAA	7 cut(s)	11, 455, 528, 735, 1145, 1176, 1680
SatI	GCNGC	6 cut(s)	81, 701, 1188, 1218, 1860, 1878
Sau3AI	GATC	6 cut(s)	29, 39, 253, 853, 1317, 1870
Sau96I	GGNCC	5 cut(s)	431, 494, 608, 1228, 1387
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	6 cut(s)	53, 590, 765, 991, 1279, 1604
SduI	GDGCHC	3 cut(s)	268, 428, 1603
SfaNI	GCATC	4 cut(s)	1050, 1462, 1824, 2006
SfcI	CTRYAG	2 cut(s)	1461, 1725
SinI	GGWCC	1 cut(s)	1387
SmiMI	CAYNNNNRTG	4 cut(s)	599, 1178, 1365, 1748
SmlI	CTYRAG	3 cut(s)	461, 941, 1100
SmoI	CTYRAG	3 cut(s)	461, 941, 1100
Sse9I	AATT	8 cut(s)	157, 245, 272, 690, 1121, 1138, 1152, 1505
SsiI	CCGC	2 cut(s)	233, 674
SspMI	CTAG	3 cut(s)	135, 605, 695
StyD4I	CCNGG	6 cut(s)	51, 588, 763, 989, 1277, 1602
StyI	CCWWGG	3 cut(s)	190, 802, 1618
TaaI	ACNGT	7 cut(s)	476, 521, 883, 1095, 1341, 1548, 2020
TaiI	ACGT	5 cut(s)	555, 735, 841, 1380, 1662
TaqI	TCGA	4 cut(s)	469, 1125, 1195, 1343
TasI	AATT	8 cut(s)	157, 245, 272, 690, 1121, 1138, 1152, 1505
TatI	WGTACW	3 cut(s)	322, 345, 898
TfiI	GAWTC	4 cut(s)	145, 631, 1256, 1984
Tru1I	TTAA	7 cut(s)	11, 455, 528, 735, 1145, 1176, 1680
Tru9I	TTAA	7 cut(s)	11, 455, 528, 735, 1145, 1176, 1680
TscAI	CASTG	4 cut(s)	1319, 1553, 1603, 1660
TseFI	GTSAC	3 cut(s)	406, 1108, 1655
TseI	GCWGC	6 cut(s)	80, 700, 1187, 1217, 1859, 1877
Tsp45I	GTSAC	3 cut(s)	406, 1108, 1655
TspGWI	ACGGA	3 cut(s)	100, 555, 1951
TspRI	CASTG	4 cut(s)	1319, 1553, 1603, 1660
Van91I	CCANNNNNTGG	2 cut(s)	618, 1314
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	1387
VspI	ATTAAT	2 cut(s)	1176, 1680
XapI	RAATTY	2 cut(s)	157, 1121
XbaI	TCTAGA	2 cut(s)	134, 694
XceI	RCATGY	2 cut(s)	905, 1964
XcmI	CCANNNNNNNNNTGG	2 cut(s)	349, 1311
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	3 cut(s)	135, 605, 695
ZraI	GACGTC	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.