Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

17756872 .. 17759214

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001577

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2343 bp

ATGAACAGTCTTTCACTCTCAGCCTCACGCCACTCAAAACCCCTCCTCCACCTTCTTAAACCCCAAACCCCCAAATCCAAATCCCCCATCTTCCTCCTCCTCAGCCGCCACCTCTGCACAAATCCCAATTCCAATCCCAACCAACCGCCCCAAGACGACGATTCCCTCGTAACCCAAGTCCTCCAACTCCTCCGACCCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCCTCTCCTTCTCCTCGCTCCCTTTTCCTCATCACTCGCCGCCTCGGCGCTCCCTCCAAAGCCCTCAAATTCTTCGATTACGTCTCCGAAAACGTGGCCGGAACCCCTCCAGGATCCAAGGCTCTGCTCTCGTCCGCATTCCAGGCCCTTCTGGAGCTCACATTGCGAGAGCCCACCTCGGAAAAGAACCTCTTTGAGCTTTACAAGATGGCCAAGGACCGGAATGTCCCGCTTAATCTCAAGGCCGCAGGTCTGCTTGTTCGGTCCATGGGCGCGGCTGGTATGGAGGACGAGGCTCTCATAGTGTTTAACGAGCTTCGTTTGGGGTTGAAAACTACTCACATTCGCAATGTGGTAATTGGGATGTTGCTCAAGATTGGGCGAGTAGATGACGCACTGAAGGTGCTCGACGAAATGCTTCACCCAGAAGCGAAGTTTCGGGTTGATGACTTTACCGGCGATGTTGTGATTGGCTCATTGCTGAGGAGAGAGCAGATAGGGAGGAGTGTCAGTGAGGAAGAAATTGTGGAGTTGGTGTCGAGATTTGGTAAGCATGGTGTGTTTCCTAATAGCACAATACTTACGAAATTGGTCACTGTTTTGTGTAGGAATAGGAAGGTTGGTATTGCTTGGGATGTTTTACATGATGTCATGAAGATGGGTGGTGCTGTAGAAGCTGCTTCGTGCAATGCGCTTTTGACAGCTTTGGGAAGAGGTAATGATTTTAGGAGGATGAGTGAGCTTATGGCGAAGATGGAAGAGATGGGCATTAAGCCCGATGTTATAACTTTTGGTATTCTTATCAATCGGTTATGCAAGTCTAGGAGAATAGATGCTGCCTTGGAGGTGTTTGAAAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGCTGAACCAGATGTGATAATCTATAACACTCTGATTGATGGACTTTGCAAAGTGGGAAGGCAGGAAGAAGGATTGCGTTTGATGGAAAGGATGAGATCGCATGGTGGCTGTGCTCCTAATACTGTTACCTACAATTGTTTGATTGATGGCTTCAACAAAGTTGGGGACATTGAGAGGGGCCGTGAGCTCTTTGATAAAATGAAGGAGGAAGGGATACCACTAAATGTGGCCACCCTTAATACTTTGCTTGATGGTCTGTGCAGGCATGGGAGACTCAACACTGCATTTGACTTCTTCAATGAAATGCAGAGGGATGGTCTGAAAGGCAATGCTGTCACTTACACAATCTTAATCACTTCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTAATCAGATGTTGAGCGCTGAATGTCCCACAGATGCAATAGTTTACCACTGCTTGATCTCTGGTTTAAGTCAAGCTGGAAGGATGGAGGATGCCAGCTTTGTTGTTTCGAAGTTGAAGGAGGCTGGTTTCTCTATGGATATCGTTTCCTACAATGTTATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAGGCGTCTGGAGTGAAGCCTGATAGCGTAACATACAACACCTTGCTTGCCTACTTAAGCAAAGCTGGGGACTTCAAAAGTGCACATAAAGTACTTGACAGGATGATGGATGAGGGTATTGTTCCCACGGTTGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGTGATATCGACAAGGCCATGAGAATCTTCAGAGACATGGGTTCTAAGTCAAAGATACCTCCGAATACTGTAATATACAGTGATTTAATAAATTCTCTCTGCAAGAAGAATGATGTGGAACAAGCTCTTTATTTGATGGAGGATATGAAGGAGAAAGGGGTGAGACCTAATACCCAAACGTTCAATGCCCTGTTCAAAGGCCTTAGAGAGAACAATTTATTAAAGAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATAACGATGGAGATTCTTACTGAATGGCTTTCTGGTGTTGGTGAAATAGAGAGGTTGAGAAAGTTTGTTCAAGGATATCCGGTTTCAAAGCCTCAGCCCCAACAGAAGGATGGGATAGTCGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

781

Amino Acids

86.89

Weight (kDa)

7.84

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	299 - 355	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	313 - 359	4.8e-10	PPR repeat family
PPR_1	PF12854	341 - 374	2.6e-11	PPR repeat
PPR_3	PF13812	383 - 431	4.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	383 - 413	1.2e-09	PPR repeat
PPR_2	PF13041	384 - 433	3.6e-15	PPR repeat family
PPR_1	PF12854	417 - 449	1e-09	PPR repeat
PPR_2	PF13041	420 - 469	7.1e-16	PPR repeat family
TPR_24	PF23276	422 - 517	8.1e-07	Fungal tetratrico peptide repeats
PPR	PF01535	423 - 453	5.6e-08	PPR repeat
PPR_long	PF17177	437 - 558	3.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	452 - 484	2.3e-11	PPR repeat
PPR_2	PF13041	456 - 504	8.7e-18	PPR repeat family
PPR	PF01535	459 - 488	2.3e-07	PPR repeat
TPR_24	PF23276	469 - 574	1.6e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	487 - 518	1.5e-09	PPR repeat
PPR_2	PF13041	491 - 538	5.4e-11	PPR repeat family
PPR	PF01535	493 - 522	5.1e-06	PPR repeat
PPR_2	PF13041	526 - 572	1.7e-08	PPR repeat family
TPR_24	PF23276	540 - 657	1.4e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	561 - 604	1.1e-13	PPR repeat family
PPR	PF01535	563 - 593	4.8e-06	PPR repeat
PPR_long	PF17177	565 - 660	5.9e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	585 - 641	1.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	592 - 623	1.8e-07	PPR repeat
PPR_2	PF13041	595 - 643	2.1e-14	PPR repeat family
PPR_1	PF12854	627 - 658	5.6e-11	PPR repeat
PPR_2	PF13041	630 - 668	1.1e-06	PPR repeat family
PPR_long	PF17177	649 - 756	4.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	653 - 711	5.2e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	663 - 737	5.7e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	664 - 695	1.5e-07	PPR repeat
PPR_2	PF13041	666 - 713	1.1e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1043
AasI	GACNNNNNNGTC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	497
AccII	CGCG	1 cut(s)	533
AciI	CCGC	7 cut(s)	106, 146, 298, 393, 488, 504, 533
AclI	AACGTT	1 cut(s)	2114
AclWI	GGATC	3 cut(s)	366, 379, 2187
AcoI	YGGCCR	3 cut(s)	354, 468, 1371
AcsI	RAATTY	2 cut(s)	326, 2026
AcuI	CTGAAG	2 cut(s)	677, 1948
AcyI	GRCGYC	1 cut(s)	1769
AfaI	GTAC	2 cut(s)	1857, 1909
AfeI	AGCGCT	1 cut(s)	1561
AfiI	CCNNNNNNNGG	2 cut(s)	477, 2320
AflII	CTTAAG	1 cut(s)	1819
AjnI	CCWGG	2 cut(s)	367, 399
Alw21I	GWGCWC	5 cut(s)	417, 666, 1258, 1332, 1849
Alw26I	GTCTC	4 cut(s)	346, 1408, 1962, 2092
Alw44I	GTGCAC	1 cut(s)	1845
AlwI	GGATC	3 cut(s)	366, 379, 2187
Aor51HI	AGCGCT	1 cut(s)	1561
AoxI	GGCC	9 cut(s)	354, 402, 468, 501, 1321, 1371, 1950, 2134, 2196
ApaLI	GTGCAC	1 cut(s)	1845
ApeKI	GCWGC	2 cut(s)	935, 1094
ApoI	RAATTY	2 cut(s)	326, 2026
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AseI	ATTAAT	1 cut(s)	1707
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	4 cut(s)	308, 533, 952, 1562
AspS9I	GGNCC	4 cut(s)	403, 475, 522, 1321
AsuHPI	GGTGA	4 cut(s)	671, 1949, 2107, 2267
AsuII	TTCGAA	1 cut(s)	1652
AvaII	GGWCC	2 cut(s)	475, 522
BaeGI	GKGCMC	1 cut(s)	1849
BalI	TGGCCA	2 cut(s)	470, 1373
BamHI	GGATCC	1 cut(s)	371
BanII	GRGCYC	3 cut(s)	417, 432, 1332
Bbv12I	GWGCWC	5 cut(s)	417, 666, 1258, 1332, 1849
BbvCI	CCTCAGC	3 cut(s)	101, 740, 2307
BbvI	GCAGC	2 cut(s)	922, 1081
BceAI	ACGGC	1 cut(s)	1308
BciT130I	CCWGG	2 cut(s)	369, 401
BciVI	GTATCC	1 cut(s)	1350
BcoDI	GTCTC	4 cut(s)	346, 1408, 1962, 2092
BfaI	CTAG	1 cut(s)	1080
BfmI	CTRYAG	1 cut(s)	927
BfoI	RGCGCY	2 cut(s)	309, 1563
BfrI	CTTAAG	1 cut(s)	1819
BfuAI	ACCTGC	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	1350
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	6 cut(s)	106, 298, 504, 534, 936, 1095
BlsI	GCNGC	6 cut(s)	107, 299, 505, 535, 937, 1096
BmcAI	AGTACT	1 cut(s)	1857
Bme1390I	CCNGG	2 cut(s)	369, 401
Bme18I	GGWCC	2 cut(s)	475, 522
BmgT120I	GGNCC	4 cut(s)	403, 475, 522, 1321
BmiI	GGNNCC	3 cut(s)	361, 373, 1322
BmrFI	CCNGG	2 cut(s)	369, 401
BmsI	GCATC	3 cut(s)	1081, 1567, 1624
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	4 cut(s)	351, 431, 1702, 1794
Bpu10I	CCTNAGC	3 cut(s)	101, 740, 2307
Bpu14I	TTCGAA	1 cut(s)	1652
BpuEI	CTTGAG	2 cut(s)	482, 614
BsaHI	GRCGYC	1 cut(s)	1769
BsaI	GGTCTC	1 cut(s)	2092
BsaJI	CCNNGG	7 cut(s)	301, 375, 435, 471, 525, 1098, 1890
BsaWI	WCCGGW	2 cut(s)	477, 2293
BsaXI	ACNNNNNCTCC	8 cut(s)	30, 60, 754, 779, 784, 809, 979, 1009
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 2320
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	2 cut(s)	215, 1719
Bse3DI	GCAATG	7 cut(s)	419, 613, 734, 952, 1477, 1539, 1924
BseBI	CCWGG	2 cut(s)	369, 401
BseDI	CCNNGG	7 cut(s)	301, 375, 435, 471, 525, 1098, 1890
BseLI	CCNNNNNNNGG	2 cut(s)	477, 2320
BseMI	GCAATG	7 cut(s)	419, 613, 734, 952, 1477, 1539, 1924
BseMII	CTCAG	4 cut(s)	33, 115, 731, 2321
BseNI	ACTGG	2 cut(s)	215, 1719
BseRI	GAGGAG	9 cut(s)	35, 86, 89, 179, 227, 261, 757, 775, 1140
BseSI	GKGCMC	1 cut(s)	1849
BseXI	GCAGC	2 cut(s)	922, 1081
BseYI	CCCAGC	1 cut(s)	1829
BsgI	GTGCAG	2 cut(s)	100, 1423
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	9 cut(s)	356, 404, 470, 503, 1323, 1373, 1952, 2136, 2198
BsiHKAI	GWGCWC	5 cut(s)	417, 666, 1258, 1332, 1849
BsiSI	CCGG	4 cut(s)	357, 478, 714, 2294
BslFI	GGGAC	4 cut(s)	470, 1322, 1554, 1847
BslI	CCNNNNNNNGG	2 cut(s)	477, 2320
BsmAI	GTCTC	4 cut(s)	346, 1408, 1962, 2092
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	4 cut(s)	470, 1322, 1554, 1847
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	9 cut(s)	356, 404, 470, 503, 1323, 1373, 1952, 2136, 2198
Bso31I	GGTCTC	1 cut(s)	2092
Bsp119I	TTCGAA	1 cut(s)	1652
Bsp1286I	GDGCHC	6 cut(s)	417, 432, 666, 1258, 1332, 1849
Bsp143I	GATC	4 cut(s)	371, 1238, 1599, 2179
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	7 cut(s)	106, 146, 298, 393, 488, 504, 533
BspANI	GGCC	9 cut(s)	356, 404, 470, 503, 1323, 1373, 1952, 2136, 2198
BspCNI	CTCAG	4 cut(s)	32, 114, 732, 2320
BspFNI	CGCG	1 cut(s)	533
BspHI	TCATGA	2 cut(s)	909, 1744
BspLI	GGNNCC	3 cut(s)	361, 373, 1322
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	3 cut(s)	366, 379, 2187
BspT104I	TTCGAA	1 cut(s)	1652
BspTI	CTTAAG	1 cut(s)	1819
BspTNI	GGTCTC	1 cut(s)	2092
BsrDI	GCAATG	7 cut(s)	419, 613, 734, 952, 1477, 1539, 1924
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	215, 1719
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	7 cut(s)	301, 375, 435, 471, 525, 1098, 1890
BssMI	GATC	4 cut(s)	371, 1238, 1599, 2179
BssNI	GRCGYC	1 cut(s)	1769
BssT1I	CCWWGG	4 cut(s)	375, 471, 525, 1098
Bst2UI	CCWGG	2 cut(s)	369, 401
Bst4CI	ACNGT	6 cut(s)	8, 856, 1267, 1894, 2005, 2015
Bst6I	CTCTTC	3 cut(s)	245, 964, 1011
BstACI	GRCGYC	1 cut(s)	1769
BstAFI	CTTAAG	1 cut(s)	1819
BstBI	TTCGAA	1 cut(s)	1652
BstC8I	GCNNGC	3 cut(s)	1406, 1639, 1812
BstDEI	CTNAG	6 cut(s)	19, 101, 740, 1980, 2138, 2307
BstDSI	CCRYGG	2 cut(s)	525, 1890
BstFNI	CGCG	1 cut(s)	533
BstH2I	RGCGCY	2 cut(s)	309, 1563
BstHHI	GCGC	4 cut(s)	308, 533, 952, 1562
BstKTI	GATC	4 cut(s)	374, 1241, 1602, 2182
BstMAI	GTCTC	4 cut(s)	346, 1408, 1962, 2092
BstMBI	GATC	4 cut(s)	371, 1238, 1599, 2179
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 303, 401, 421, 932
BstNI	CCWGG	2 cut(s)	369, 401
BstSCI	CCNGG	2 cut(s)	367, 399
BstSFI	CTRYAG	1 cut(s)	927
BstSLI	GKGCMC	1 cut(s)	1849
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	922, 1081
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuI	GTATCC	1 cut(s)	1350
BsuRI	GGCC	9 cut(s)	356, 404, 470, 503, 1323, 1373, 1952, 2136, 2198
BtgI	CCRYGG	2 cut(s)	525, 1890
BtgZI	GCGATG	1 cut(s)	732
BtsI	GCAGTG	2 cut(s)	1422, 1591
BtsIMutI	CAGTG	6 cut(s)	653, 775, 852, 1422, 1591, 2020
BveI	ACCTGC	1 cut(s)	497
Cac8I	GCNNGC	3 cut(s)	1406, 1639, 1812
CciI	TCATGA	2 cut(s)	909, 1744
CfoI	GCGC	4 cut(s)	308, 533, 952, 1562
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	4 cut(s)	403, 475, 522, 1321
CseI	GACGC	2 cut(s)	659, 1758
Csp6I	GTAC	2 cut(s)	1856, 1908
CviQI	GTAC	2 cut(s)	1856, 1908
DdeI	CTNAG	6 cut(s)	19, 101, 740, 1980, 2138, 2307
DpnI	GATC	4 cut(s)	373, 1240, 1601, 2181
DpnII	GATC	4 cut(s)	371, 1238, 1599, 2179
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	3 cut(s)	354, 468, 1371
Eam1104I	CTCTTC	3 cut(s)	245, 964, 1011
EarI	CTCTTC	3 cut(s)	245, 964, 1011
Ecl136II	GAGCTC	2 cut(s)	415, 1330
Eco130I	CCWWGG	4 cut(s)	375, 471, 525, 1098
Eco147I	AGGCCT	2 cut(s)	2136, 2198
Eco24I	GRGCYC	3 cut(s)	417, 432, 1332
Eco31I	GGTCTC	1 cut(s)	2092
Eco32I	GATATC	3 cut(s)	1684, 1942, 2291
Eco47I	GGWCC	2 cut(s)	475, 522
Eco47III	AGCGCT	1 cut(s)	1561
Eco53kI	GAGCTC	2 cut(s)	415, 1330
Eco57I	CTGAAG	2 cut(s)	677, 1948
EcoICRI	GAGCTC	2 cut(s)	415, 1330
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	367, 399
EcoRV	GATATC	3 cut(s)	1684, 1942, 2291
EcoT14I	CCWWGG	4 cut(s)	375, 471, 525, 1098
EcoT38I	GRGCYC	3 cut(s)	417, 432, 1332
ErhI	CCWWGG	4 cut(s)	375, 471, 525, 1098
Esp3I	CGTCTC	1 cut(s)	346
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	4 cut(s)	470, 1322, 1554, 1847
FauI	CCCGC	1 cut(s)	495
Fnu4HI	GCNGC	6 cut(s)	106, 298, 504, 534, 936, 1095
FriOI	GRGCYC	3 cut(s)	417, 432, 1332
Fsp4HI	GCNGC	6 cut(s)	106, 298, 504, 534, 936, 1095
FspBI	CTAG	1 cut(s)	1080
GlaI	GCGC	4 cut(s)	307, 532, 951, 1561
GluI	GCNGC	6 cut(s)	106, 298, 504, 534, 936, 1095
GsaI	CCCAGC	1 cut(s)	1833
GsuI	CTGGAG	4 cut(s)	351, 431, 1702, 1794
HaeII	RGCGCY	2 cut(s)	309, 1563
HaeIII	GGCC	9 cut(s)	356, 404, 470, 503, 1323, 1373, 1952, 2136, 2198
HapII	CCGG	4 cut(s)	357, 478, 714, 2294
HgaI	GACGC	2 cut(s)	659, 1758
HhaI	GCGC	4 cut(s)	308, 533, 952, 1562
Hin1I	GRCGYC	1 cut(s)	1769
Hin6I	GCGC	4 cut(s)	306, 531, 950, 1560
HinP1I	GCGC	4 cut(s)	306, 531, 950, 1560
HinfI	GANTC	6 cut(s)	161, 1416, 1741, 1915, 1959, 2227
HpaII	CCGG	4 cut(s)	357, 478, 714, 2294
HphI	GGTGA	4 cut(s)	671, 1949, 2107, 2267
Hpy166II	GTNNAC	3 cut(s)	1516, 1588, 1847
Hpy188I	TCNGA	8 cut(s)	194, 346, 439, 1176, 1464, 1551, 1967, 1998
Hpy188III	TCNNGA	7 cut(s)	410, 631, 798, 910, 1745, 1773, 2207
Hpy8I	GTNNAC	3 cut(s)	1516, 1588, 1847
Hpy99I	CGWCG	2 cut(s)	161, 671
HpyCH4III	ACNGT	6 cut(s)	8, 856, 1267, 1894, 2005, 2015
HpyCH4IV	ACGT	3 cut(s)	339, 351, 2114
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 303, 401, 421, 932
HpyF3I	CTNAG	6 cut(s)	19, 101, 740, 1980, 2138, 2307
HpySE526I	ACGT	3 cut(s)	339, 351, 2114
Hsp92I	GRCGYC	1 cut(s)	1769
HspAI	GCGC	4 cut(s)	306, 531, 950, 1560
Kzo9I	GATC	4 cut(s)	371, 1238, 1599, 2179
LmnI	GCTCC	4 cut(s)	281, 313, 412, 1261
Lsp1109I	GCAGC	2 cut(s)	922, 1081
LweI	GCATC	3 cut(s)	1081, 1567, 1624
MaeI	CTAG	1 cut(s)	1080
MaeII	ACGT	3 cut(s)	339, 351, 2114
MaeIII	GTNAC	6 cut(s)	169, 850, 1267, 1477, 1792, 1897
MalI	GATC	4 cut(s)	373, 1240, 1601, 2181
MboI	GATC	4 cut(s)	371, 1238, 1599, 2179
MfeI	CAATTG	1 cut(s)	1276
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	6 cut(s)	417, 432, 666, 1258, 1332, 1849
MlsI	TGGCCA	2 cut(s)	470, 1373
MluCI	AATT	9 cut(s)	127, 326, 615, 780, 845, 1276, 2026, 2149, 2171
MluNI	TGGCCA	2 cut(s)	470, 1373
MlyI	GAGTC	1 cut(s)	1410
MmeI	TCCRAC	2 cut(s)	208, 217
Mox20I	TGGCCA	2 cut(s)	470, 1373
MroXI	GAANNNNTTC	1 cut(s)	675
MscI	TGGCCA	2 cut(s)	470, 1373
MslI	CAYNNNNRTG	1 cut(s)	914
Msp20I	TGGCCA	2 cut(s)	470, 1373
MspCI	CTTAAG	1 cut(s)	1819
MspI	CCGG	4 cut(s)	357, 478, 714, 2294
MspR9I	CCNGG	2 cut(s)	369, 401
MunI	CAATTG	1 cut(s)	1276
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	369, 401
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	5 cut(s)	114, 303, 401, 421, 932
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	4 cut(s)	371, 1238, 1599, 2179
NlaIV	GGNNCC	3 cut(s)	361, 373, 1322
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	3 cut(s)	850, 1477, 1897
NspV	TTCGAA	1 cut(s)	1652
PagI	TCATGA	2 cut(s)	909, 1744
PceI	AGGCCT	2 cut(s)	2136, 2198
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	5 cut(s)	161, 1741, 1915, 1959, 2227
PfoI	TCCNGGA	1 cut(s)	367
PkrI	GCNGC	6 cut(s)	107, 299, 505, 535, 937, 1096
PleI	GAGTC	1 cut(s)	1410
PpsI	GAGTC	1 cut(s)	1410
PshBI	ATTAAT	1 cut(s)	1707
PsiI	TTATAA	1 cut(s)	1043
Psp124BI	GAGCTC	2 cut(s)	417, 1332
Psp1406I	AACGTT	1 cut(s)	2114
Psp6I	CCWGG	2 cut(s)	367, 399
PspFI	CCCAGC	1 cut(s)	1829
PspGI	CCWGG	2 cut(s)	367, 399
PspN4I	GGNNCC	3 cut(s)	361, 373, 1322
PspPI	GGNCC	4 cut(s)	403, 475, 522, 1321
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	2 cut(s)	1857, 1909
RsaNI	GTAC	2 cut(s)	1856, 1908
RseI	CAYNNNNRTG	1 cut(s)	914
SacI	GAGCTC	2 cut(s)	417, 1332
SatI	GCNGC	6 cut(s)	106, 298, 504, 534, 936, 1095
Sau3AI	GATC	4 cut(s)	371, 1238, 1599, 2179
Sau96I	GGNCC	4 cut(s)	403, 475, 522, 1321
ScaI	AGTACT	1 cut(s)	1857
SchI	GAGTC	1 cut(s)	1410
ScrFI	CCNGG	2 cut(s)	369, 401
SduI	GDGCHC	6 cut(s)	417, 432, 666, 1258, 1332, 1849
SfaNI	GCATC	3 cut(s)	1081, 1567, 1624
SfcI	CTRYAG	1 cut(s)	927
SfuI	TTCGAA	1 cut(s)	1652
SinI	GGWCC	2 cut(s)	475, 522
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	3 cut(s)	497, 629, 1819
SmoI	CTYRAG	3 cut(s)	497, 629, 1819
Sse9I	AATT	9 cut(s)	127, 326, 615, 780, 845, 1276, 2026, 2149, 2171
SseBI	AGGCCT	2 cut(s)	2136, 2198
SsiI	CCGC	7 cut(s)	106, 146, 298, 393, 488, 504, 533
SspI	AATATT	1 cut(s)	1522
SspMI	CTAG	1 cut(s)	1080
SstI	GAGCTC	2 cut(s)	417, 1332
StuI	AGGCCT	2 cut(s)	2136, 2198
StyD4I	CCNGG	2 cut(s)	367, 399
StyI	CCWWGG	4 cut(s)	375, 471, 525, 1098
TaaI	ACNGT	6 cut(s)	8, 856, 1267, 1894, 2005, 2015
TaiI	ACGT	3 cut(s)	342, 354, 2117
TaqI	TCGA	6 cut(s)	333, 666, 797, 1652, 1944, 2182
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	9 cut(s)	127, 326, 615, 780, 845, 1276, 2026, 2149, 2171
TatI	WGTACW	1 cut(s)	1855
TauI	GCSGC	4 cut(s)	108, 300, 506, 536
TfiI	GAWTC	5 cut(s)	161, 1741, 1915, 1959, 2227
TscAI	CASTG	6 cut(s)	660, 775, 859, 1429, 1598, 2020
TseFI	GTSAC	3 cut(s)	850, 1477, 1897
TseI	GCWGC	2 cut(s)	935, 1094
Tsp45I	GTSAC	3 cut(s)	850, 1477, 1897
TspDTI	ATGAA	7 cut(s)	17, 926, 1358, 1458, 1733, 1907, 2096
TspRI	CASTG	6 cut(s)	660, 775, 859, 1429, 1598, 2020
Vha464I	CTTAAG	1 cut(s)	1819
VneI	GTGCAC	1 cut(s)	1845
VpaK11BI	GGWCC	2 cut(s)	475, 522
VspI	ATTAAT	1 cut(s)	1707
XapI	RAATTY	2 cut(s)	326, 2026
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2321
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	1 cut(s)	1080
ZrmI	AGTACT	1 cut(s)	1857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.