Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001626.1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

87891 .. 88169

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001626.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgagtgagcttatggcgaagatggaagagatgggcattaagcccaatgttataacttttggtattcttgttaatcggttatgcaagtctaggagaatagatgctgccttggaagtgtttgaaaagatgaatggaggggtaaaaggggtttccgctgaaccagatgtgatcgtctataacactttgattgatggactttgcaaggtgggaaggcaggaagaaggattgcgtttgtggattccgatctgcctttttgtgatagaaaggagagatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

92

Amino Acids

10.4

Weight (kDa)

5.53

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AciI	CCGC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	122
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	3 cut(s)	16, 25, 185
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	168, 243
BspACI	CCGC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	168, 243
BssT1I	CCWWGG	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	171, 246
BstMBI	GATC	2 cut(s)	168, 243
BstV1I	GCAGC	1 cut(s)	91
CviJI	RGCY	2 cut(s)	10, 43
CviKI_1	RGCY	2 cut(s)	10, 43
DpnI	GATC	2 cut(s)	170, 245
DpnII	GATC	2 cut(s)	168, 243
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	4 cut(s)	14, 53, 82, 177
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	204, 215
HpyCH4V	TGCA	2 cut(s)	84, 201
Kzo9I	GATC	2 cut(s)	168, 243
LpnPI	CCDG	2 cut(s)	174, 200
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	90
MalI	GATC	2 cut(s)	170, 245
MboI	GATC	2 cut(s)	168, 243
MboII	GAAGA	3 cut(s)	31, 38, 230
MnlI	CCTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	39, 72
MspA1I	CMGCKG	1 cut(s)	155
NdeII	GATC	2 cut(s)	168, 243
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	39, 72
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	168, 243
SetI	ASST	2 cut(s)	12, 207
SfaNI	GCATC	1 cut(s)	91
SgeI	CNNG	7 cut(s)	80, 97, 102, 121, 173, 214, 227
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	39, 72
Tru9I	TTAA	2 cut(s)	39, 72
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	143
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.