Rh5AG043600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000874
Physical Location & Seq
Reverse (-)
3502762 .. 3503800
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG043600.1

Sequence Viewer

Length: 579 bp
ATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCTTCTCTTCGCTCCCTTTTCCTCATCACTCGCCGCCTCGGTGCTCCCTCCAAAGCCCTCAAATTCTTCGATTACGTCTCCTAAAACGTGGGCGGAAGCCCTCCAGGATCCAAGGCTCTACTCTCATTTACCAGCCAAACCTTTACTTAGCCCTATACCTATCATCCATTCCCAAAACCGAAAAAGGGGTTTCATTCTATATTACTATTACCAACAACTAAATTCATTCGATCACTCCATTCCCACTACACACAATTTGATTGAATTCACAAATGGAAAAAACCAAAACCACAAAAATCGAAAACAAGAAGAAAAAAAAAAGGCACTACCCCAAGTGAAGAGAGACCCATCTGAAGCTATAGCTGCGGTATGCTCGCGGCCGCAAGCAATGTCCAGCCAGCGCGAATTAGCTCCGGCGGGGCAACCAAAGAGCTCCGGCGAGAGCTGCTTCGGGATCCTCAACTGGCGCTCTCTCCCCTTCCGACCAGTCTGGCCGGACTGGTTATATCCCCAGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.55

Weight (kDa)

9.96

Isoelectric Point (pI)

68.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 436, 462
AciI CCGC 6 cut(s) 93, 152, 425, 436, 440, 476
AclWI GGATC 4 cut(s) 161, 174, 508, 521
AcoI YGGCCR 2 cut(s) 437, 551
AcsI RAATTY 3 cut(s) 121, 280, 323
AcuI CTGAAG 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 5 cut(s) 416, 422, 470, 492, 504
AluI AGCT 5 cut(s) 416, 422, 470, 492, 504
Alw21I GWGCWC 2 cut(s) 105, 494
Alw26I GTCTC 2 cut(s) 141, 396
AlwI GGATC 4 cut(s) 161, 174, 508, 521
AoxI GGCC 2 cut(s) 437, 551
ApeKI GCWGC 2 cut(s) 422, 504
ApoI RAATTY 3 cut(s) 121, 280, 323
ArsI GACNNNNNNTTYG 1 cut(s) 33
AspLEI GCGC 2 cut(s) 462, 528
BamHI GGATCC 2 cut(s) 166, 513
BanII GRGCYC 1 cut(s) 494
Bbv12I GWGCWC 2 cut(s) 105, 494
BbvI GCAGC 2 cut(s) 409, 491
BccI CCATC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 141, 396
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 529
BisI GCNGC 5 cut(s) 93, 423, 437, 440, 505
BlsI GCNGC 5 cut(s) 94, 424, 438, 441, 506
Bme1390I CCNGG 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 168, 515
BmrFI CCNGG 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 96, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 4 cut(s) 16, 527, 545, 563
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 96, 170
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 453
BseNI ACTGG 4 cut(s) 16, 527, 545, 563
BseRI GAGGAG 1 cut(s) 28
BseX3I CGGCCG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 409, 491
Bsh1236I CGCG 2 cut(s) 436, 462
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 2 cut(s) 439, 553
BsiEI CGRYCG 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 105, 494
BsiSI CCGG 3 cut(s) 473, 495, 554
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 141, 396
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 2 cut(s) 439, 553
Bso31I GGTCTC 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 105, 494
Bsp143I GATC 3 cut(s) 166, 289, 513
BspACI CCGC 6 cut(s) 93, 152, 425, 436, 440, 476
BspANI GGCC 2 cut(s) 439, 553
BspFNI CGCG 2 cut(s) 436, 462
BspLI GGNNCC 2 cut(s) 168, 515
BspPI GGATC 4 cut(s) 161, 174, 508, 521
BspTNI GGTCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 4 cut(s) 16, 527, 545, 563
BssECI CCNNGG 2 cut(s) 96, 170
BssMI GATC 3 cut(s) 166, 289, 513
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 164
Bst6I CTCTTC 3 cut(s) 46, 71, 392
BstC8I GCNNGC 3 cut(s) 434, 444, 458
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 2 cut(s) 436, 462
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 2 cut(s) 462, 528
BstKTI GATC 3 cut(s) 169, 292, 516
BstMAI GTCTC 2 cut(s) 141, 396
BstMBI GATC 3 cut(s) 166, 289, 513
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 2 cut(s) 422, 504
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 2 cut(s) 436, 462
BstV1I GCAGC 2 cut(s) 409, 491
BstX2I RGATCY 2 cut(s) 166, 513
BstYI RGATCY 2 cut(s) 166, 513
BstZI CGGCCG 1 cut(s) 437
BsuRI GGCC 2 cut(s) 439, 553
BtsCI GGATG 1 cut(s) 222
Cac8I GCNNGC 3 cut(s) 434, 444, 458
CciNI GCGGCCGC 1 cut(s) 437
CfoI GCGC 2 cut(s) 462, 528
DdeI CTNAG 1 cut(s) 206
DpnI GATC 3 cut(s) 168, 291, 515
DpnII GATC 3 cut(s) 166, 289, 513
EaeI YGGCCR 2 cut(s) 437, 551
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 3 cut(s) 46, 71, 392
EarI CTCTTC 3 cut(s) 46, 71, 392
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 492
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 396
Eco52I CGGCCG 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 492
EcoRI GAATTC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 141
FaiI YATR 5 cut(s) 215, 259, 419, 430, 565
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 93, 423, 437, 440, 505
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 5 cut(s) 93, 423, 437, 440, 505
GlaI GCGC 2 cut(s) 461, 527
GluI GCNGC 5 cut(s) 93, 423, 437, 440, 505
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 529
HaeIII GGCC 2 cut(s) 439, 553
HapII CCGG 3 cut(s) 473, 495, 554
HhaI GCGC 2 cut(s) 462, 528
Hin6I GCGC 2 cut(s) 460, 526
HinP1I GCGC 2 cut(s) 460, 526
HpaII CCGG 3 cut(s) 473, 495, 554
Hpy188I TCNGA 2 cut(s) 412, 542
Hpy188III TCNNGA 1 cut(s) 511
HpyAV CCTTC 2 cut(s) 71, 547
HpyCH4IV ACGT 3 cut(s) 134, 146, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 504
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 3 cut(s) 134, 146, 575
HspAI GCGC 2 cut(s) 460, 526
Kzo9I GATC 3 cut(s) 166, 289, 513
LmnI GCTCC 4 cut(s) 76, 108, 475, 497
Lsp1109I GCAGC 2 cut(s) 409, 491
MaeII ACGT 3 cut(s) 134, 146, 575
MalI GATC 3 cut(s) 168, 291, 515
MboI GATC 3 cut(s) 166, 289, 513
MboII GAAGA 5 cut(s) 33, 58, 117, 380, 409
MflI RGATCY 2 cut(s) 166, 513
MhlI GDGCHC 2 cut(s) 105, 494
MluCI AATT 5 cut(s) 121, 280, 313, 323, 464
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 9 cut(s) 46, 49, 66, 91, 106, 117, 127, 170, 527
MspI CCGG 3 cut(s) 473, 495, 554
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 2 cut(s) 436, 462
MwoI GCNNNNNNNGC 2 cut(s) 422, 504
NdeII GATC 3 cut(s) 166, 289, 513
NlaIV GGNNCC 2 cut(s) 168, 515
NotI GCGGCCGC 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 5 cut(s) 94, 424, 438, 441, 506
Psp124BI GAGCTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 168, 515
PsuI RGATCY 2 cut(s) 166, 513
SacI GAGCTC 1 cut(s) 494
SatI GCNGC 5 cut(s) 93, 423, 437, 440, 505
Sau3AI GATC 3 cut(s) 166, 289, 513
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 2 cut(s) 105, 494
SfcI CTRYAG 1 cut(s) 417
Sse9I AATT 5 cut(s) 121, 280, 313, 323, 464
SsiI CCGC 6 cut(s) 93, 152, 425, 436, 440, 476
SstI GAGCTC 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 3 cut(s) 137, 149, 578
TaqI TCGA 3 cut(s) 128, 288, 358
TasI AATT 5 cut(s) 121, 280, 313, 323, 464
TauI GCSGC 3 cut(s) 95, 439, 442
TseI GCWGC 2 cut(s) 422, 504
TspDTI ATGAA 2 cut(s) 241, 273
XapI RAATTY 3 cut(s) 121, 280, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.