Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

51620876 .. 51621482

Gene Structure 607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGAGTTTTTCACTCTTAGCCTCAAGCCACTCAAAAGTCAAAACCCCCTCCTCGACCTTCTTAAACCCCAAACCCCAAATCCAAATCCTCCTGAGCCGCCACCTCTGCACAAATCCCAATTCCAATCCGAACCAACCACCCCAAGACGACGATTCCCTCATAACCCAAGTCCTCCAACTCCTCCGACCCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCCTCTCCTCGCTCCCTTTTCCTCATCACTCGCCGCCTCGGCGCTCCTTCTAAAGCCCTCAAGTTCTTCGATTACGTCTCCAAAAACGTGGCCGGAACCCCTCCAGGATCCAAGGCTCTGCTCTCCTCCGCATTCCAGGCCCTTCTGGAGCTCACATTGCGAGAGCCCACGTCGGAAAACAAGCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

9.72

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	100, 286, 381
AclWI	GGATC	2 cut(s)	354, 367
AcoI	YGGCCR	1 cut(s)	342
AjiI	CACGTC	1 cut(s)	423
AjnI	CCWGG	2 cut(s)	355, 387
AluBI	AGCT	2 cut(s)	403, 436
AluI	AGCT	2 cut(s)	403, 436
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	354, 367
AoxI	GGCC	2 cut(s)	342, 390
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	405, 420
Bbv12I	GWGCWC	1 cut(s)	405
BciT130I	CCWGG	2 cut(s)	357, 389
BcoDI	GTCTC	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	297
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	2 cut(s)	100, 286
BlsI	GCNGC	2 cut(s)	101, 287
Bme1390I	CCNGG	2 cut(s)	357, 389
BmgBI	CACGTC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	349, 361
BmrFI	CCNGG	2 cut(s)	357, 389
BpmI	CTGGAG	2 cut(s)	339, 419
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	2 cut(s)	10, 296
BsaJI	CCNNGG	2 cut(s)	289, 363
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	357, 389
BseDI	CCNNGG	2 cut(s)	289, 363
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	5 cut(s)	43, 173, 221, 249, 367
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	344, 392
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	344, 392
Bsp1286I	GDGCHC	2 cut(s)	405, 420
Bsp143I	GATC	1 cut(s)	359
BspACI	CCGC	3 cut(s)	100, 286, 381
BspANI	GGCC	2 cut(s)	344, 392
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	349, 361
BspPI	GGATC	2 cut(s)	354, 367
BsrDI	GCAATG	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	289, 363
BssMI	GATC	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	357, 389
Bst6I	CTCTTC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	19, 95
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	362
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 291, 389, 409
BstNI	CCWGG	2 cut(s)	357, 389
BstSCI	CCNGG	2 cut(s)	355, 387
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	344, 392
BtrI	CACGTC	1 cut(s)	423
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	19, 95
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	2 cut(s)	405, 420
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	355, 387
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	2 cut(s)	405, 420
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	334
FaiI	YATR	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	100, 286
FriOI	GRGCYC	2 cut(s)	405, 420
Fsp4HI	GCNGC	2 cut(s)	100, 286
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	100, 286
GsuI	CTGGAG	2 cut(s)	339, 419
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	344, 392
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	132, 188, 427
Hpy188III	TCNNGA	2 cut(s)	94, 398
Hpy99I	CGWCG	2 cut(s)	155, 427
HpyAV	CCTTC	3 cut(s)	70, 309, 404
HpyCH4IV	ACGT	3 cut(s)	327, 339, 422
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 291, 389, 409
HpyF3I	CTNAG	2 cut(s)	19, 95
HpySE526I	ACGT	3 cut(s)	327, 339, 422
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	359
LmnI	GCTCC	3 cut(s)	269, 301, 400
LpnPI	CCDG	8 cut(s)	107, 190, 342, 358, 369, 374, 383, 401
MaeII	ACGT	3 cut(s)	327, 339, 422
MalI	GATC	1 cut(s)	361
MboI	GATC	1 cut(s)	359
MboII	GAAGA	3 cut(s)	16, 226, 310
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	405, 420
MluCI	AATT	1 cut(s)	121
MmeI	TCCRAC	3 cut(s)	202, 211, 405
MseI	TTAA	1 cut(s)	65
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	357, 389
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	2 cut(s)	357, 389
MwoI	GCNNNNNNNGC	4 cut(s)	108, 291, 389, 409
NdeII	GATC	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	349, 361
NmeAIII	GCCGAG	1 cut(s)	270
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	101, 287
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	355, 387
PspGI	CCWGG	2 cut(s)	355, 387
PspN4I	GGNNCC	2 cut(s)	349, 361
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	2 cut(s)	100, 286
Sau3AI	GATC	1 cut(s)	359
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	357, 389
SduI	GDGCHC	2 cut(s)	405, 420
SetI	ASST	8 cut(s)	62, 108, 251, 330, 342, 405, 425, 438
SmlI	CTYRAG	2 cut(s)	25, 311
SmoI	CTYRAG	2 cut(s)	25, 311
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	3 cut(s)	100, 286, 381
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	355, 387
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	3 cut(s)	330, 342, 425
TaqI	TCGA	2 cut(s)	56, 321
TasI	AATT	1 cut(s)	121
TauI	GCSGC	2 cut(s)	102, 288
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.