Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

41320489 .. 41322825

Gene Structure 2337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG382400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGAAGAGTCTTTCACTCTCAGCCTCAAGCCACTCAAAACCCCTCCTCCACCTTCTTAAACCCCAAACCCCCAAATCCAAATCCCCCGTCTTCCTCCTCCTCGGCCGCCACCTCTGCACCGATACCAATTCCAATCCTAACCAACCACCCCAAGACGACGATTCCCTCGTAACCCAAGTCCTCCAACTCCTCCGACCCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCCCCTTCTCCTCGCTCCCTTTTCCTCATCACTCGCCGCCTCGGCGCTCCCTCCAAAGCCCTCAAGTTCTTCGATTACGTCTCCGAAAACGTGGCCGGAACCCCTCCAGGATCCAAGGCTCTGCTCTCCACCGCATTCCAGGCCCTTCTGGAGCTCACATTGCGAGAGCCCACCTCGGAAAACAAGCTCTTTGAGCTTTACAAGATGGCCAAGGACCGGAATGTCCCGCTGAATCTCAAGGCCGCAGGCCTGCTTGTTCGGTCCATGGGCGCGGCTGGTATGGAGGACGAGGCTCTCATAGTGTTTAACGAGCTTCATTTGGGGTTGAAAACTACTCACATTCGCAATGTGGTGATTGGGATGTTGCTGAAGATTGGGCGTGTAGATGATGCACTGAAGGTGCTCGACGAAATGCTTCACCCAGAAGCGAAGTTTCGGGTTGATGATTTTAGCGGCTATGTTGTGATTGGCTCATTGCTGAGGAGAGAGCAGATAGGGAGGAGTGTCAGTGAGGAAGAAATTGTGGAGTTGGTGTCGAGATTTGGTAAGCATGGTGTGTTTCCTAATAACACGATACTTACGAAATTGGTCACTGTTTTGTGTAGGAATAGGAAGGTTGGTATTGCTTGGGATGTTTTACATGATGTCATGAAGATGGGTGGTGCTGTAGAAGCTGCTCCGTGCAATGCGCTTTTGACAGCTTTGGGAAGAGGTAATGATTTTAAGAGGATGAGTGAGCTTATGGCGAAGATGGAAGAGATGGGCATTAAGCCCGATGTTATAACTTTTGGTATTCTTATTAATCGGTTATGCAAGTCTAGGAGAATAGATGCTGCCTTGGAGGTGTTTGAAAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGCTGAACCAGATGTGATCATCTATAACACTCTGATTGATGGACTTTGTAAAGTGGGAAGGCAAGAAGAAGGATTGCGTTTGATGGAAAGGATGAGATCGCAAGGTGGCTGTGCTCCTAATACTGTTACCTACAATTGTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAGGGGCCGTGAGCTCTTTGATAAAATGAAGGAGGAAGGGATACCACTAAATGCGGCCACCCTTAATACTTTGCTTGATGGTCTGTGCAGGCATGGGAGACTCAACACTGCATTTGAGTTCTTCAATGAAATGCAGAGGGATGGTCTGAAAGGCAATGCTGTCACTTACACAATCTTAATCACTTCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTAATCAGATGTTGAGGGCTGAATGTCCCACAGATGCAATAGTTTACCACTGCTTGATCTCTGGTTTAAGTCAAGCTGGAAGGATGGAGGATGCCAGCTTTGTTGTCTCCAAGTTGAAGGAGGCTGGTTTCTCCATGGATATCGTTTCCTACAATGTAATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAGGCGTCTGGAGTGAAGCCTGATAGCGTAACATACAACACCTTGCTTGCCTACTTAAGCAAAGCTGGGGACTTCAAAAGTGCACATAAAGTACTTGACAGGATGATGGATGAGGGTATTGTTCCCACTGTTGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGCGATATTGACAAAGCCATGAGAATCTTCAGAGACATGGGTTCTAAGTCAAAGATACCTCCGAATACTGTAATATACAATGATTTAATAAGTTCTCTCTGCAAGAAGAATGATGTGGAACAAGCTCTTTATTTGATGGAGGATATGAAGGAGAAGGGGGTGAGACCTAATACTCAAACGTTCAATGCCCTGTTCAAGGGCCTTAGAGAGAACAATTTATTAAAGAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATAACGATGGAGATTCTTACTGAATGGCTTTCTGGTGTTGGTGAAATAGAGAGGTTGAGAAAGTTTGTTCAAGGATATCCGGTTTCAAAGCCTCAGCCCCAACAGAAGGATGGGATAGTTGCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

778

Amino Acids

86.7

Weight (kDa)

7.83

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	297 - 353	2.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	313 - 357	1.8e-09	PPR repeat family
PPR_1	PF12854	339 - 372	2.6e-11	PPR repeat
PPR_3	PF13812	381 - 428	2.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	381 - 411	1.2e-09	PPR repeat
PPR_2	PF13041	382 - 431	3.7e-15	PPR repeat family
PPR_1	PF12854	415 - 447	1e-09	PPR repeat
PPR_2	PF13041	418 - 467	1.2e-15	PPR repeat family
TPR_24	PF23276	420 - 515	2.9e-07	Fungal tetratrico peptide repeats
PPR	PF01535	421 - 451	5.6e-08	PPR repeat
PPR_long	PF17177	427 - 558	3.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	442 - 497	4.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	450 - 482	3e-11	PPR repeat
PPR_2	PF13041	454 - 502	4.5e-17	PPR repeat family
PPR	PF01535	457 - 486	1.3e-07	PPR repeat
TPR_24	PF23276	466 - 572	1.2e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	485 - 516	1.5e-09	PPR repeat
PPR_2	PF13041	489 - 536	2.6e-11	PPR repeat family
PPR	PF01535	491 - 520	3.3e-06	PPR repeat
PPR_2	PF13041	524 - 570	1.7e-08	PPR repeat family
TPR_24	PF23276	538 - 655	1.4e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	559 - 602	1.1e-13	PPR repeat family
PPR	PF01535	561 - 591	4.8e-06	PPR repeat
PPR_long	PF17177	562 - 658	5.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	583 - 639	1.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	590 - 621	1.8e-07	PPR repeat
PPR_2	PF13041	593 - 641	2.1e-14	PPR repeat family
PPR_long	PF17177	615 - 748	8.9e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	625 - 656	5.5e-11	PPR repeat
PPR_2	PF13041	628 - 666	1.1e-06	PPR repeat family
PPR_3	PF13812	651 - 709	5.4e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	661 - 734	1e-05	Fungal tetratrico peptide repeats
PPR_1	PF12854	662 - 693	5.3e-08	PPR repeat
PPR_2	PF13041	664 - 711	6.7e-17	PPR repeat family
PPR	PF01535	667 - 697	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1037
AasI	GACNNNNNNGTC	1 cut(s)	476
AccII	CGCG	1 cut(s)	527
AciI	CCGC	8 cut(s)	106, 292, 387, 482, 498, 527, 708, 1364
AclI	AACGTT	1 cut(s)	2108
AclWI	GGATC	3 cut(s)	360, 373, 2181
AcoI	YGGCCR	4 cut(s)	103, 348, 462, 1365
AcuI	CTGAAG	3 cut(s)	644, 671, 1942
AcyI	GRCGYC	1 cut(s)	1763
AfaI	GTAC	2 cut(s)	1851, 1903
AfiI	CCNNNNNNNGG	3 cut(s)	471, 2125, 2314
AflII	CTTAAG	1 cut(s)	1813
AjnI	CCWGG	2 cut(s)	361, 393
Alw21I	GWGCWC	5 cut(s)	411, 660, 1252, 1326, 1843
Alw26I	GTCTC	5 cut(s)	340, 1402, 1648, 1956, 2086
Alw44I	GTGCAC	1 cut(s)	1839
AlwI	GGATC	3 cut(s)	360, 373, 2181
ApaLI	GTGCAC	1 cut(s)	1839
ApeKI	GCWGC	2 cut(s)	929, 1088
ArsI	GACNNNNNNTTYG	4 cut(s)	72, 104, 200, 232
AseI	ATTAAT	2 cut(s)	1056, 1701
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	3 cut(s)	302, 527, 946
AspS9I	GGNCC	5 cut(s)	397, 469, 516, 1315, 2128
AsuHPI	GGTGA	4 cut(s)	619, 665, 2101, 2261
AvaII	GGWCC	2 cut(s)	469, 516
BaeGI	GKGCMC	1 cut(s)	1843
BalI	TGGCCA	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	365
BanII	GRGCYC	3 cut(s)	411, 426, 1326
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	5 cut(s)	411, 660, 1252, 1326, 1843
BbvCI	CCTCAGC	2 cut(s)	734, 2301
BbvI	GCAGC	2 cut(s)	916, 1075
BceAI	ACGGC	1 cut(s)	1302
BciT130I	CCWGG	2 cut(s)	363, 395
BciVI	GTATCC	1 cut(s)	1344
BclI	TGATCA	1 cut(s)	1152
BcoDI	GTCTC	5 cut(s)	340, 1402, 1648, 1956, 2086
BfaI	CTAG	1 cut(s)	1074
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	1813
BfuI	GTATCC	1 cut(s)	1344
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	8 cut(s)	106, 292, 498, 528, 709, 930, 1089, 1365
BlsI	GCNGC	8 cut(s)	107, 293, 499, 529, 710, 931, 1090, 1366
BmcAI	AGTACT	1 cut(s)	1851
Bme1390I	CCNGG	2 cut(s)	363, 395
Bme18I	GGWCC	2 cut(s)	469, 516
BmgT120I	GGNCC	5 cut(s)	397, 469, 516, 1315, 2128
BmiI	GGNNCC	3 cut(s)	355, 367, 1316
BmrFI	CCNGG	2 cut(s)	363, 395
BmsI	GCATC	4 cut(s)	634, 1075, 1561, 1618
BpiI	GAAGAC	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	4 cut(s)	345, 425, 1696, 1788
Bpu10I	CCTNAGC	2 cut(s)	734, 2301
BpuEI	CTTGAG	3 cut(s)	10, 302, 476
BsaHI	GRCGYC	1 cut(s)	1763
BsaI	GGTCTC	1 cut(s)	2086
BsaJI	CCNNGG	8 cut(s)	100, 295, 369, 429, 465, 519, 1092, 1671
BsaWI	WCCGGW	2 cut(s)	471, 2287
BsaXI	ACNNNNNCTCC	8 cut(s)	30, 60, 239, 269, 748, 773, 778, 803
Bsc4I	CCNNNNNNNGG	3 cut(s)	471, 2125, 2314
Bse1I	ACTGG	2 cut(s)	215, 1713
Bse3DI	GCAATG	7 cut(s)	413, 607, 728, 946, 1471, 1533, 1918
BseBI	CCWGG	2 cut(s)	363, 395
BseDI	CCNNGG	8 cut(s)	100, 295, 369, 429, 465, 519, 1092, 1671
BseLI	CCNNNNNNNGG	3 cut(s)	471, 2125, 2314
BseMI	GCAATG	7 cut(s)	413, 607, 728, 946, 1471, 1533, 1918
BseMII	CTCAG	3 cut(s)	33, 725, 2315
BseNI	ACTGG	2 cut(s)	215, 1713
BseRI	GAGGAG	9 cut(s)	35, 86, 89, 179, 227, 255, 751, 769, 1134
BseSI	GKGCMC	1 cut(s)	1843
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	916, 1075
BseYI	CCCAGC	1 cut(s)	1823
BsgI	GTGCAG	2 cut(s)	100, 1417
Bsh1236I	CGCG	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	5 cut(s)	411, 660, 1252, 1326, 1843
BsiSI	CCGG	3 cut(s)	351, 472, 2288
BslFI	GGGAC	4 cut(s)	464, 1316, 1548, 1841
BslI	CCNNNNNNNGG	3 cut(s)	471, 2125, 2314
BsmAI	GTCTC	5 cut(s)	340, 1402, 1648, 1956, 2086
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	4 cut(s)	464, 1316, 1548, 1841
BsmI	GAATGC	1 cut(s)	389
Bso31I	GGTCTC	1 cut(s)	2086
Bsp1286I	GDGCHC	6 cut(s)	411, 426, 660, 1252, 1326, 1843
Bsp143I	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
Bsp19I	CCATGG	2 cut(s)	519, 1671
BspACI	CCGC	8 cut(s)	106, 292, 387, 482, 498, 527, 708, 1364
BspCNI	CTCAG	3 cut(s)	32, 726, 2314
BspFNI	CGCG	1 cut(s)	527
BspHI	TCATGA	2 cut(s)	903, 1738
BspLI	GGNNCC	3 cut(s)	355, 367, 1316
BspPI	GGATC	3 cut(s)	360, 373, 2181
BspTI	CTTAAG	1 cut(s)	1813
BspTNI	GGTCTC	1 cut(s)	2086
BsrDI	GCAATG	7 cut(s)	413, 607, 728, 946, 1471, 1533, 1918
BsrI	ACTGG	2 cut(s)	215, 1713
BssECI	CCNNGG	8 cut(s)	100, 295, 369, 429, 465, 519, 1092, 1671
BssMI	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
BssNI	GRCGYC	1 cut(s)	1763
BssT1I	CCWWGG	5 cut(s)	369, 465, 519, 1092, 1671
Bst2UI	CCWGG	2 cut(s)	363, 395
Bst4CI	ACNGT	4 cut(s)	850, 1261, 1888, 1999
Bst6I	CTCTTC	3 cut(s)	245, 958, 1005
BstACI	GRCGYC	1 cut(s)	1763
BstAFI	CTTAAG	1 cut(s)	1813
BstC8I	GCNNGC	5 cut(s)	502, 506, 1400, 1633, 1806
BstDEI	CTNAG	5 cut(s)	19, 734, 1974, 2132, 2301
BstDSI	CCRYGG	2 cut(s)	519, 1671
BstENI	CCTNNNNNAGG	1 cut(s)	2123
BstFNI	CGCG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	302, 527, 946
BstKTI	GATC	5 cut(s)	368, 1155, 1235, 1596, 2176
BstMAI	GTCTC	5 cut(s)	340, 1402, 1648, 1956, 2086
BstMBI	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 297, 395, 415, 448, 926, 1929
BstNI	CCWGG	2 cut(s)	363, 395
BstSCI	CCNGG	2 cut(s)	361, 393
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	1843
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	2 cut(s)	916, 1075
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BstZI	CGGCCG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	1344
BtgI	CCRYGG	2 cut(s)	519, 1671
BtsI	GCAGTG	2 cut(s)	1416, 1585
BtsIMutI	CAGTG	6 cut(s)	647, 769, 846, 1416, 1585, 1884
Cac8I	GCNNGC	5 cut(s)	502, 506, 1400, 1633, 1806
CciI	TCATGA	2 cut(s)	903, 1738
CfoI	GCGC	3 cut(s)	302, 527, 946
Cfr13I	GGNCC	5 cut(s)	397, 469, 516, 1315, 2128
CseI	GACGC	1 cut(s)	1752
Csp6I	GTAC	2 cut(s)	1850, 1902
CviQI	GTAC	2 cut(s)	1850, 1902
DdeI	CTNAG	5 cut(s)	19, 734, 1974, 2132, 2301
DpnI	GATC	5 cut(s)	367, 1154, 1234, 1595, 2175
DpnII	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
DrdI	GACNNNNNNGTC	1 cut(s)	476
DseDI	GACNNNNNNGTC	1 cut(s)	476
EaeI	YGGCCR	4 cut(s)	103, 348, 462, 1365
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	245, 958, 1005
EarI	CTCTTC	3 cut(s)	245, 958, 1005
Ecl136II	GAGCTC	2 cut(s)	409, 1324
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	5 cut(s)	369, 465, 519, 1092, 1671
Eco147I	AGGCCT	2 cut(s)	504, 2192
Eco24I	GRGCYC	3 cut(s)	411, 426, 1326
Eco31I	GGTCTC	1 cut(s)	2086
Eco32I	GATATC	2 cut(s)	1678, 2285
Eco47I	GGWCC	2 cut(s)	469, 516
Eco52I	CGGCCG	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	409, 1324
Eco57I	CTGAAG	3 cut(s)	644, 671, 1942
EcoICRI	GAGCTC	2 cut(s)	409, 1324
EcoNI	CCTNNNNNAGG	1 cut(s)	2123
EcoO109I	RGGNCCY	2 cut(s)	397, 2128
EcoRII	CCWGG	2 cut(s)	361, 393
EcoRV	GATATC	2 cut(s)	1678, 2285
EcoT14I	CCWWGG	5 cut(s)	369, 465, 519, 1092, 1671
EcoT38I	GRGCYC	3 cut(s)	411, 426, 1326
ErhI	CCWWGG	5 cut(s)	369, 465, 519, 1092, 1671
Esp3I	CGTCTC	1 cut(s)	340
FaqI	GGGAC	4 cut(s)	464, 1316, 1548, 1841
FauI	CCCGC	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	1152
Fnu4HI	GCNGC	8 cut(s)	106, 292, 498, 528, 709, 930, 1089, 1365
FriOI	GRGCYC	3 cut(s)	411, 426, 1326
Fsp4HI	GCNGC	8 cut(s)	106, 292, 498, 528, 709, 930, 1089, 1365
FspBI	CTAG	1 cut(s)	1074
GlaI	GCGC	3 cut(s)	301, 526, 945
GluI	GCNGC	8 cut(s)	106, 292, 498, 528, 709, 930, 1089, 1365
GsaI	CCCAGC	1 cut(s)	1827
GsuI	CTGGAG	4 cut(s)	345, 425, 1696, 1788
HaeII	RGCGCY	1 cut(s)	303
HapII	CCGG	3 cut(s)	351, 472, 2288
HgaI	GACGC	1 cut(s)	1752
HhaI	GCGC	3 cut(s)	302, 527, 946
Hin1I	GRCGYC	1 cut(s)	1763
Hin6I	GCGC	3 cut(s)	300, 525, 944
HinP1I	GCGC	3 cut(s)	300, 525, 944
HinfI	GANTC	8 cut(s)	7, 161, 487, 1410, 1735, 1909, 1953, 2221
HpaII	CCGG	3 cut(s)	351, 472, 2288
HphI	GGTGA	4 cut(s)	619, 665, 2101, 2261
Hpy166II	GTNNAC	3 cut(s)	1510, 1582, 1841
Hpy188I	TCNGA	8 cut(s)	194, 340, 433, 1170, 1458, 1545, 1961, 1992
Hpy188III	TCNNGA	6 cut(s)	404, 792, 904, 1739, 1767, 2201
Hpy8I	GTNNAC	3 cut(s)	1510, 1582, 1841
Hpy99I	CGWCG	2 cut(s)	161, 665
HpyCH4III	ACNGT	4 cut(s)	850, 1261, 1888, 1999
HpyCH4IV	ACGT	3 cut(s)	333, 345, 2108
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 297, 395, 415, 448, 926, 1929
HpyF3I	CTNAG	5 cut(s)	19, 734, 1974, 2132, 2301
HpySE526I	ACGT	3 cut(s)	333, 345, 2108
Hsp92I	GRCGYC	1 cut(s)	1763
HspAI	GCGC	3 cut(s)	300, 525, 944
Ksp22I	TGATCA	1 cut(s)	1152
Kzo9I	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
LmnI	GCTCC	5 cut(s)	275, 307, 406, 937, 1255
Lsp1109I	GCAGC	2 cut(s)	916, 1075
LweI	GCATC	4 cut(s)	634, 1075, 1561, 1618
MaeI	CTAG	1 cut(s)	1074
MaeII	ACGT	3 cut(s)	333, 345, 2108
MaeIII	GTNAC	6 cut(s)	169, 844, 1261, 1471, 1786, 1891
MalI	GATC	5 cut(s)	367, 1154, 1234, 1595, 2175
MboI	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
MfeI	CAATTG	1 cut(s)	1270
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	6 cut(s)	411, 426, 660, 1252, 1326, 1843
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	6 cut(s)	127, 774, 839, 1270, 2143, 2165
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	2 cut(s)	16, 1404
MmeI	TCCRAC	2 cut(s)	208, 217
Mox20I	TGGCCA	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	464
MslI	CAYNNNNRTG	1 cut(s)	908
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	484
MspCI	CTTAAG	1 cut(s)	1813
MspI	CCGG	3 cut(s)	351, 472, 2288
MspR9I	CCNGG	2 cut(s)	363, 395
MunI	CAATTG	1 cut(s)	1270
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	363, 395
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	7 cut(s)	114, 297, 395, 415, 448, 926, 1929
NcoI	CCATGG	2 cut(s)	519, 1671
NdeII	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
NlaIV	GGNNCC	3 cut(s)	355, 367, 1316
NmeAIII	GCCGAG	2 cut(s)	81, 276
NmuCI	GTSAC	3 cut(s)	844, 1471, 1891
PagI	TCATGA	2 cut(s)	903, 1738
PceI	AGGCCT	2 cut(s)	504, 2192
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 833
PctI	GAATGC	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	6 cut(s)	161, 487, 1735, 1909, 1953, 2221
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	8 cut(s)	107, 293, 499, 529, 710, 931, 1090, 1366
PleI	GAGTC	2 cut(s)	15, 1404
PpsI	GAGTC	2 cut(s)	15, 1404
PshBI	ATTAAT	2 cut(s)	1056, 1701
PsiI	TTATAA	1 cut(s)	1037
Psp124BI	GAGCTC	2 cut(s)	411, 1326
Psp1406I	AACGTT	1 cut(s)	2108
Psp6I	CCWGG	2 cut(s)	361, 393
PspFI	CCCAGC	1 cut(s)	1823
PspGI	CCWGG	2 cut(s)	361, 393
PspN4I	GGNNCC	3 cut(s)	355, 367, 1316
PspPI	GGNCC	5 cut(s)	397, 469, 516, 1315, 2128
PsuI	RGATCY	1 cut(s)	365
RsaI	GTAC	2 cut(s)	1851, 1903
RsaNI	GTAC	2 cut(s)	1850, 1902
RseI	CAYNNNNRTG	1 cut(s)	908
SacI	GAGCTC	2 cut(s)	411, 1326
SatI	GCNGC	8 cut(s)	106, 292, 498, 528, 709, 930, 1089, 1365
Sau3AI	GATC	5 cut(s)	365, 1152, 1232, 1593, 2173
Sau96I	GGNCC	5 cut(s)	397, 469, 516, 1315, 2128
ScaI	AGTACT	1 cut(s)	1851
SchI	GAGTC	2 cut(s)	16, 1404
ScrFI	CCNGG	2 cut(s)	363, 395
SduI	GDGCHC	6 cut(s)	411, 426, 660, 1252, 1326, 1843
SfaNI	GCATC	4 cut(s)	634, 1075, 1561, 1618
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	2 cut(s)	469, 516
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	4 cut(s)	25, 317, 491, 1813
SmoI	CTYRAG	4 cut(s)	25, 317, 491, 1813
Sse9I	AATT	6 cut(s)	127, 774, 839, 1270, 2143, 2165
SseBI	AGGCCT	2 cut(s)	504, 2192
SsiI	CCGC	8 cut(s)	106, 292, 387, 482, 498, 527, 708, 1364
SspI	AATATT	1 cut(s)	1516
SspMI	CTAG	1 cut(s)	1074
SstI	GAGCTC	2 cut(s)	411, 1326
StuI	AGGCCT	2 cut(s)	504, 2192
StyD4I	CCNGG	2 cut(s)	361, 393
StyI	CCWWGG	5 cut(s)	369, 465, 519, 1092, 1671
TaaI	ACNGT	4 cut(s)	850, 1261, 1888, 1999
TaiI	ACGT	3 cut(s)	336, 348, 2111
TaqI	TCGA	4 cut(s)	327, 660, 791, 2176
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	6 cut(s)	127, 774, 839, 1270, 2143, 2165
TatI	WGTACW	1 cut(s)	1849
TauI	GCSGC	6 cut(s)	108, 294, 500, 530, 711, 1367
TfiI	GAWTC	6 cut(s)	161, 487, 1735, 1909, 1953, 2221
TscAI	CASTG	6 cut(s)	654, 769, 853, 1423, 1592, 1891
TseFI	GTSAC	3 cut(s)	844, 1471, 1891
TseI	GCWGC	2 cut(s)	929, 1088
Tsp45I	GTSAC	3 cut(s)	844, 1471, 1891
TspDTI	ATGAA	8 cut(s)	17, 560, 920, 1352, 1452, 1727, 1901, 2090
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	6 cut(s)	654, 769, 853, 1423, 1592, 1891
Vha464I	CTTAAG	1 cut(s)	1813
VneI	GTGCAC	1 cut(s)	1839
VpaK11BI	GGWCC	2 cut(s)	469, 516
VspI	ATTAAT	2 cut(s)	1056, 1701
XagI	CCTNNNNNAGG	1 cut(s)	2123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2315
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	1 cut(s)	1074
ZrmI	AGTACT	1 cut(s)	1851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.