Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

49803385 .. 49805774

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAAACAAATCTAAATAGAAGAAAACAGGTGAGTGTATTCGATGCACCCAAACCAACCACCTCTCGCACCAATCCCAATTCCGATCCGAACCAACCACCCCAAGATGACGATTCCCTTATAACCCAAGTCCTCCAACTCCTCCGACCCAATGAGAAAGACGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCTTCTCCTCGCTCCCTTTTCCTCATCACTCGCCGCCTCGGCGCTTCCTCCAAAGCCCTCAAATTCTTCGATTACGTCTCCAAAAACGTGGCCGAAACCCCTCCAGATCCAAGGCTCGCTCTCCTCCCCATTCCGTGCCCTTCGGAGCTCACATTGCGGGAGCCCACCTCGAAAAGAAGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

131

Amino Acids

14.11

Weight (kDa)

10.21

Isoelectric Point (pI)

66.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AciI	CCGC	2 cut(s)	243, 366
AclWI	GGATC	2 cut(s)	80, 310
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	271
AluBI	AGCT	2 cut(s)	357, 389
AluI	AGCT	2 cut(s)	357, 389
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	80, 310
AoxI	GGCC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	349
BanII	GRGCYC	2 cut(s)	359, 374
Bbv12I	GWGCWC	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	246, 319
Bse3DI	GCAATG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	246, 319
BseMI	GCAATG	1 cut(s)	361
BseRI	GAGGAG	4 cut(s)	131, 178, 206, 322
BseSI	GKGCMC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	291
BsmBI	CGTCTC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	3 cut(s)	349, 359, 374
Bsp143I	GATC	2 cut(s)	85, 315
BspACI	CCGC	2 cut(s)	243, 366
BspANI	GGCC	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	80, 310
BsrDI	GCAATG	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	246, 319
BssMI	GATC	2 cut(s)	85, 315
BssT1I	CCWWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	88, 318
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	85, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 363
BstSLI	GKGCMC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	253
CviJI	RGCY	6 cut(s)	265, 301, 324, 357, 372, 389
CviKI_1	RGCY	6 cut(s)	265, 301, 324, 357, 372, 389
DpnI	GATC	2 cut(s)	87, 317
DpnII	GATC	2 cut(s)	85, 315
EaeI	YGGCCR	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	359, 374
Eco53kI	GAGCTC	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	359, 374
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	291
FaiI	YATR	1 cut(s)	122
FalI	AAGNNNNNCTT	1 cut(s)	375
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	243
FriOI	GRGCYC	2 cut(s)	359, 374
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	4 cut(s)	85, 90, 146, 354
Hpy188III	TCNNGA	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	221, 359
HpyCH4IV	ACGT	2 cut(s)	284, 296
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 363
HpySE526I	ACGT	2 cut(s)	284, 296
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	85, 315
LmnI	GCTCC	3 cut(s)	226, 354, 369
LpnPI	CCDG	2 cut(s)	14, 326
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	2 cut(s)	284, 296
MalI	GATC	2 cut(s)	87, 317
MboI	GATC	2 cut(s)	85, 315
MboII	GAAGA	3 cut(s)	33, 183, 267
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	3 cut(s)	349, 359, 374
MluCI	AATT	2 cut(s)	79, 271
MmeI	TCCRAC	2 cut(s)	160, 169
MwoI	GCNNNNNNNGC	2 cut(s)	248, 363
NdeII	GATC	2 cut(s)	85, 315
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	359
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	85, 315
SduI	GDGCHC	3 cut(s)	349, 359, 374
SetI	ASST	8 cut(s)	33, 65, 208, 287, 299, 359, 379, 391
SfaNI	GCATC	1 cut(s)	34
Sse9I	AATT	2 cut(s)	79, 271
SsiI	CCGC	2 cut(s)	243, 366
SstI	GAGCTC	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	319
TaiI	ACGT	2 cut(s)	287, 299
TaqI	TCGA	3 cut(s)	42, 278, 379
TasI	AATT	2 cut(s)	79, 271
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	177, 332
XapI	RAATTY	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.