Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

50501196 .. 50503697

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGAACTACAATCTATCACGCTCAGCCTCACGGCACTCAAAACCCCTCCTCCACCTTCTTAAAACCCAAACCCCAAAACCCAAATCCCCAGTCTTCATCCTCACCCACCACCTCTGCACCAATCTCAGCCCCAATCCGAACCAACCACCCCAAGACGACGACACCTTGATAACCCAAGTGCTCCAACTCCTCCAACCCAATGAGAAAGACTGGAACTTCGACCAACTCCACACCCTCCTCTTCTCCAACTCAACCTCTCCCTCCCCTCACTCTGTCTTCCACATCACTCGCCGCCTCGGCGCTCCGTCCAAAGCCATCAAATTCTTCGACTACATTTCCGAAAATGTGGGAACAACAAGCCCTCCAGGCTCCAATGGTTTGCTCTCCTCCGCATTCCAGGCCGTTCTGGAGCTCACATTGCGAGAACCCACATCGGAAAAGAAGCTCATTAAGCTTTACAAGATGGCGAAGAAGCGGAATGTGGCGCTTGATGTAAACGCCGCAGCTCTGCTTGTTCGGTCCCTGGGGACGGCTGGCATGGAGGACGAGGCTGTCATGGTGTTTAATGAACTCGATTCGGGGTTGAAGAACACTCATATTCGCAATGTGGTGATTAGGTTGTTGCTGAACACGGGGCGAGTTGATGACGCACTGAAGGTGCTCGACGAAATGCTTGACCCAGAAGCAAAGTTCCGGGTTGACGACTTTACCGGGGATATTGTGATTGGCTCATTGTTGAGGAAAGAGCAGAAAGGGAGGAGAGTCAGTGTGGAGGAAATTGTGGTGTTGGTGTCGAAATTTGGTAAGCATGGTGTGTTTCCTAATAGCCTGGTACTTACGAAATTGGTGACTGTTTTGTGTAGGAATGGGAAGGTTAGTGGCGCTTGGGATGTGTTGCATGATGTTATGGAGATGGGTGGTGCTGTAGAAGCTGCTTCTTGCAATGCGCTTTTGACAGCTTTGGGAAGAGGTAATGATTTTAAGAGGATGAGTGAGCTTATGGTGAAGATGGAAGAGGTGGGCATTAAGCCGAATCTTATTACTTTTGGTATTCTTATTAATCGTTTATGTAAGTCTGGGAGACTAGATGCTGCCTTGGAGGTGTTTGAGAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGCTAAACCGGATGTGATTATCTATAACACTTTGATTGATGGACTTTGTAAAGCGGGAAGGCCAGAGGAGGGATTTCATTTGATGGGAAAGATGAGATCGCAAGATGGCTGTGCTCCCAATACTGTTACGTACAATTGTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAGGGGTCGTGAGCTCTTTGACAAAATGAAGGAGGAAGGGATACTGCTAAATGTGGTCACCCTCAATACTTTGCTTGATGGTTTTTGCAGGCATGGGAGACTCAACACTGCACTTGAGTTCTTCAAGGAGATGCAGAGGGATGGTCTGAAAGGCAATGCCGTTACTTACACTATCTTAATCACTTCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTGATCAGATGTTGAGCGCTGAATGTCCCACAGATGCAAAAGTTTATCACTGCTTGATCTCTGGTTTAAGCCTAGCCGGAAGGATGGAGGATGCCTGCTTTGTTGTCTCAAAGTTGAAGGAAGCTGGGTTCTCCATGGATAATGTTTCCTACAATGTAATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAAGCGTCTGGAGTGAAGCCAGATAGTGTGACATACAACACCTTACTTGCCTACTTAAGCAAAGCTGGGGACTTCAAAAGTGCACATAAAGTACTTGACAGGATGAGGGATGAGGGTATTGTTCCCACTGTGGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGCGATATTGACAAAGCCATGAGAATCTTCAGAGACATGAGTTCTAAGTCAAAGAAACATCCGAATACAGTAATATACAATGATTTAATAAATTCTCTCTGTAAGAAGAATGATGTGGAACAAGCTCTTTATTTGATGGATGATATGAAGGATAAGGGGGTGAGACCTAATACCCAAACGTTCAATGCCTTGTTCAAAGGCCTTAGAGAGAACAATTTATTAGAGAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATAACAATGGAAATTCTTACCGAGTGGCTTTCTTGCGTTGGTGAAATACGGAGGTTGAGAAAGTTTGTTCAAGGATATCCAGTTTCAAAGACAGAGGGCAAAGCGGCTGGTTTCAAAGCAACAGAGGGAAAAGCCACTGGTTTCAAAGCCACAGAAGCCGCTGGTTTCAAAGCCACAGAAGGGAAACCCGCTGGTTTCAAAGCGACAGAGGGCAAAGCCTCTGGTTTCAAAGCGACAGACGGGAAACCCGCTGGTTTCAAAGCGACAGAAGGCAACGCTAACATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

833

Amino Acids

91.96

Weight (kDa)

8.55

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	298 - 354	1.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	312 - 358	1.3e-08	PPR repeat family
PPR_1	PF12854	341 - 373	5.5e-12	PPR repeat
PPR_3	PF13812	382 - 429	5.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	382 - 412	1.8e-10	PPR repeat
PPR_2	PF13041	383 - 432	5.5e-16	PPR repeat family
PPR	PF01535	387 - 413	7.8e-07	PPR repeat
PPR_1	PF12854	415 - 448	6.7e-10	PPR repeat
PPR_2	PF13041	419 - 468	1e-15	PPR repeat family
PPR	PF01535	422 - 452	6e-08	PPR repeat
PPR_3	PF13812	443 - 488	2.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	451 - 483	3.2e-12	PPR repeat
PPR_2	PF13041	455 - 503	8.6e-18	PPR repeat family
PPR	PF01535	457 - 487	1.7e-08	PPR repeat
PPR_1	PF12854	486 - 517	8.1e-10	PPR repeat
PPR	PF01535	492 - 521	4.6e-06	PPR repeat
PPR_2	PF13041	497 - 536	4.5e-06	PPR repeat family
PPR_2	PF13041	528 - 572	2.1e-07	PPR repeat family
TPR_24	PF23276	545 - 656	2.7e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	556 - 659	8.1e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	560 - 603	6.5e-13	PPR repeat family
PPR	PF01535	562 - 592	5.2e-06	PPR repeat
PPR_3	PF13812	584 - 640	2.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	591 - 623	1.2e-07	PPR repeat
PPR_2	PF13041	594 - 642	9.7e-15	PPR repeat family
PPR_1	PF12854	626 - 658	3.3e-11	PPR repeat
PPR_2	PF13041	629 - 660	5.9e-06	PPR repeat family
PPR_long	PF17177	647 - 747	5.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	664 - 694	3.1e-08	PPR repeat
TPR_24	PF23276	664 - 734	1e-05	Fungal tetratrico peptide repeats
PPR_2	PF13041	665 - 712	4.2e-17	PPR repeat family
PPR	PF01535	668 - 698	4.5e-06	PPR repeat
Decapeptide	PF25296	769 - 827	1.1e-07	Decapeptide repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
AciI	CCGC	9 cut(s)	292, 390, 475, 501, 1193, 2315, 2370, 2400, 2460
AclI	AACGTT	1 cut(s)	2111
AclWI	GGATC	1 cut(s)	2184
AcsI	RAATTY	4 cut(s)	320, 797, 2023, 2223
AcuI	CTGAAG	2 cut(s)	674, 1945
AfaI	GTAC	4 cut(s)	834, 1271, 1854, 1906
AfeI	AGCGCT	1 cut(s)	1558
AfiI	CCNNNNNNNGG	3 cut(s)	529, 1208, 2391
AflII	CTTAAG	1 cut(s)	1816
AjnI	CCWGG	4 cut(s)	364, 396, 522, 828
AloI	GAACNNNNNNTCC	2 cut(s)	1652, 1684
Alw21I	GWGCWC	6 cut(s)	183, 414, 663, 1255, 1329, 1846
Alw26I	GTCTC	5 cut(s)	1075, 1405, 1651, 1959, 2089
Alw44I	GTGCAC	1 cut(s)	1842
AlwI	GGATC	1 cut(s)	2184
Aor51HI	AGCGCT	1 cut(s)	1558
AoxI	GGCC	4 cut(s)	399, 1199, 2131, 2193
ApaLI	GTGCAC	1 cut(s)	1842
ApeKI	GCWGC	3 cut(s)	503, 932, 1091
ApoI	RAATTY	4 cut(s)	320, 797, 2023, 2223
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 200, 232
AseI	ATTAAT	2 cut(s)	1059, 1704
AspLEI	GCGC	5 cut(s)	302, 487, 884, 949, 1559
AspS9I	GGNCC	1 cut(s)	519
AsuC2I	CCSGG	2 cut(s)	695, 712
AsuHPI	GGTGA	7 cut(s)	94, 622, 859, 1015, 1363, 2104, 2264
AvaII	GGWCC	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	1846
BanII	GRGCYC	2 cut(s)	414, 1329
BbsI	GAAGAC	2 cut(s)	85, 268
Bbv12I	GWGCWC	6 cut(s)	183, 414, 663, 1255, 1329, 1846
BbvI	GCAGC	3 cut(s)	515, 919, 1078
BceAI	ACGGC	4 cut(s)	47, 386, 546, 1457
BciT130I	CCWGG	4 cut(s)	366, 398, 524, 830
BciVI	GTATCC	1 cut(s)	1347
BclI	TGATCA	1 cut(s)	1543
BcnI	CCSGG	2 cut(s)	695, 712
BcoDI	GTCTC	5 cut(s)	1075, 1405, 1651, 1959, 2089
BfaI	CTAG	2 cut(s)	1085, 1613
BfmI	CTRYAG	1 cut(s)	924
BfoI	RGCGCY	4 cut(s)	303, 488, 885, 1560
BfrI	CTTAAG	1 cut(s)	1816
BfuI	GTATCC	1 cut(s)	1347
BglI	GCCNNNNNGGC	2 cut(s)	297, 366
BisI	GCNGC	7 cut(s)	292, 501, 504, 933, 1092, 2316, 2370
BlpI	GCTNAGC	1 cut(s)	22
BlsI	GCNGC	7 cut(s)	293, 502, 505, 934, 1093, 2317, 2371
BmcAI	AGTACT	1 cut(s)	1854
Bme1390I	CCNGG	6 cut(s)	366, 398, 524, 695, 712, 830
Bme18I	GGWCC	1 cut(s)	519
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	370, 521
BmrFI	CCNGG	6 cut(s)	366, 398, 524, 695, 712, 830
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	4 cut(s)	1078, 1434, 1564, 1621
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	2 cut(s)	85, 268
BpmI	CTGGAG	4 cut(s)	348, 428, 1699, 1791
Bpu1102I	GCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	1448
BpuMI	CCSGG	2 cut(s)	695, 712
BsaAI	YACGTR	1 cut(s)	1269
BsaI	GGTCTC	1 cut(s)	2089
BsaJI	CCNNGG	6 cut(s)	295, 522, 523, 711, 1095, 1674
BsaWI	WCCGGW	1 cut(s)	1147
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 63, 346, 376, 751, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 1208, 2391
Bse1I	ACTGG	5 cut(s)	89, 215, 1716, 2291, 2353
Bse3DI	GCAATG	6 cut(s)	416, 610, 949, 1474, 1536, 1921
BseBI	CCWGG	4 cut(s)	366, 398, 524, 830
BseDI	CCNNGG	6 cut(s)	295, 522, 523, 711, 1095, 1674
BseLI	CCNNNNNNNGG	3 cut(s)	529, 1208, 2391
BseMI	GCAATG	6 cut(s)	416, 610, 949, 1474, 1536, 1921
BseMII	CTCAG	2 cut(s)	36, 139
BseNI	ACTGG	5 cut(s)	89, 215, 1716, 2291, 2353
BseRI	GAGGAG	7 cut(s)	38, 179, 227, 376, 772, 1137, 1220
BseSI	GKGCMC	1 cut(s)	1846
BseXI	GCAGC	3 cut(s)	515, 919, 1078
BseYI	CCCAGC	2 cut(s)	1664, 1826
BsgI	GTGCAG	2 cut(s)	100, 1407
BshFI	GGCC	4 cut(s)	401, 1201, 2133, 2195
BsiHKAI	GWGCWC	6 cut(s)	183, 414, 663, 1255, 1329, 1846
BsiSI	CCGG	4 cut(s)	694, 711, 1148, 1617
BslFI	GGGAC	5 cut(s)	505, 541, 1319, 1551, 1844
BslI	CCNNNNNNNGG	3 cut(s)	529, 1208, 2391
BsmAI	GTCTC	5 cut(s)	1075, 1405, 1651, 1959, 2089
BsmFI	GGGAC	5 cut(s)	505, 541, 1319, 1551, 1844
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	4 cut(s)	401, 1201, 2133, 2195
Bso31I	GGTCTC	1 cut(s)	2089
Bsp1286I	GDGCHC	6 cut(s)	183, 414, 663, 1255, 1329, 1846
Bsp143I	GATC	4 cut(s)	1235, 1543, 1596, 2176
Bsp1720I	GCTNAGC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	1674
BspACI	CCGC	9 cut(s)	292, 390, 475, 501, 1193, 2315, 2370, 2400, 2460
BspANI	GGCC	4 cut(s)	401, 1201, 2133, 2195
BspCNI	CTCAG	2 cut(s)	35, 138
BspHI	TCATGA	1 cut(s)	1741
BspLI	GGNNCC	2 cut(s)	370, 521
BspPI	GGATC	1 cut(s)	2184
BspTI	CTTAAG	1 cut(s)	1816
BspTNI	GGTCTC	1 cut(s)	2089
BsrDI	GCAATG	6 cut(s)	416, 610, 949, 1474, 1536, 1921
BsrI	ACTGG	5 cut(s)	89, 215, 1716, 2291, 2353
BssECI	CCNNGG	6 cut(s)	295, 522, 523, 711, 1095, 1674
BssMI	GATC	4 cut(s)	1235, 1543, 1596, 2176
BssT1I	CCWWGG	2 cut(s)	1095, 1674
Bst2UI	CCWGG	4 cut(s)	366, 398, 524, 830
Bst4CI	ACNGT	4 cut(s)	853, 1264, 1891, 2002
Bst6I	CTCTTC	3 cut(s)	245, 961, 1008
BstAFI	CTTAAG	1 cut(s)	1816
BstBAI	YACGTR	1 cut(s)	1269
BstC8I	GCNNGC	3 cut(s)	535, 1403, 1636
BstDEI	CTNAG	4 cut(s)	22, 125, 1977, 2135
BstDSI	CCRYGG	1 cut(s)	1674
BstEII	GGTNACC	1 cut(s)	1369
BstH2I	RGCGCY	4 cut(s)	303, 488, 885, 1560
BstHHI	GCGC	5 cut(s)	302, 487, 884, 949, 1559
BstKTI	GATC	4 cut(s)	1238, 1546, 1599, 2179
BstMAI	GTCTC	5 cut(s)	1075, 1405, 1651, 1959, 2089
BstMBI	GATC	4 cut(s)	1235, 1543, 1596, 2176
BstMWI	GCNNNNNNNGC	8 cut(s)	297, 366, 398, 418, 451, 929, 1932, 2366
BstNI	CCWGG	4 cut(s)	366, 398, 524, 830
BstPI	GGTNACC	1 cut(s)	1369
BstSCI	CCNGG	6 cut(s)	364, 396, 522, 693, 710, 828
BstSFI	CTRYAG	1 cut(s)	924
BstSLI	GKGCMC	1 cut(s)	1846
BstSNI	TACGTA	1 cut(s)	1269
BstV1I	GCAGC	3 cut(s)	515, 919, 1078
BstV2I	GAAGAC	2 cut(s)	85, 268
BsuI	GTATCC	1 cut(s)	1347
BsuRI	GGCC	4 cut(s)	401, 1201, 2133, 2195
BtgI	CCRYGG	1 cut(s)	1674
BtsI	GCAGTG	2 cut(s)	1419, 1588
BtsIMutI	CAGTG	6 cut(s)	650, 772, 1419, 1588, 1887, 2346
Cac8I	GCNNGC	3 cut(s)	535, 1403, 1636
CciI	TCATGA	1 cut(s)	1741
CfoI	GCGC	5 cut(s)	302, 487, 884, 949, 1559
Cfr13I	GGNCC	1 cut(s)	519
CseI	GACGC	2 cut(s)	656, 1755
Csp6I	GTAC	4 cut(s)	833, 1270, 1853, 1905
CviQI	GTAC	4 cut(s)	833, 1270, 1853, 1905
DdeI	CTNAG	4 cut(s)	22, 125, 1977, 2135
DpnI	GATC	4 cut(s)	1237, 1545, 1598, 2178
DpnII	GATC	4 cut(s)	1235, 1543, 1596, 2176
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
Eam1104I	CTCTTC	3 cut(s)	245, 961, 1008
EarI	CTCTTC	3 cut(s)	245, 961, 1008
Ecl136II	GAGCTC	2 cut(s)	412, 1327
Eco105I	TACGTA	1 cut(s)	1269
Eco130I	CCWWGG	2 cut(s)	1095, 1674
Eco147I	AGGCCT	2 cut(s)	2133, 2195
Eco24I	GRGCYC	2 cut(s)	414, 1329
Eco31I	GGTCTC	1 cut(s)	2089
Eco32I	GATATC	1 cut(s)	2288
Eco47I	GGWCC	1 cut(s)	519
Eco47III	AGCGCT	1 cut(s)	1558
Eco53kI	GAGCTC	2 cut(s)	412, 1327
Eco57I	CTGAAG	2 cut(s)	674, 1945
Eco91I	GGTNACC	1 cut(s)	1369
EcoICRI	GAGCTC	2 cut(s)	412, 1327
EcoO65I	GGTNACC	1 cut(s)	1369
EcoRII	CCWGG	4 cut(s)	364, 396, 522, 828
EcoRV	GATATC	1 cut(s)	2288
EcoT14I	CCWWGG	2 cut(s)	1095, 1674
EcoT38I	GRGCYC	2 cut(s)	414, 1329
ErhI	CCWWGG	2 cut(s)	1095, 1674
FaqI	GGGAC	5 cut(s)	505, 541, 1319, 1551, 1844
FauI	CCCGC	3 cut(s)	1186, 2407, 2467
FbaI	TGATCA	1 cut(s)	1543
Fnu4HI	GCNGC	7 cut(s)	292, 501, 504, 933, 1092, 2316, 2370
FriOI	GRGCYC	2 cut(s)	414, 1329
Fsp4HI	GCNGC	7 cut(s)	292, 501, 504, 933, 1092, 2316, 2370
FspBI	CTAG	2 cut(s)	1085, 1613
GlaI	GCGC	5 cut(s)	301, 486, 883, 948, 1558
GluI	GCNGC	7 cut(s)	292, 501, 504, 933, 1092, 2316, 2370
GsaI	CCCAGC	2 cut(s)	1668, 1830
GsuI	CTGGAG	4 cut(s)	348, 428, 1699, 1791
HaeII	RGCGCY	4 cut(s)	303, 488, 885, 1560
HaeIII	GGCC	4 cut(s)	401, 1201, 2133, 2195
HapII	CCGG	4 cut(s)	694, 711, 1148, 1617
HgaI	GACGC	2 cut(s)	656, 1755
HhaI	GCGC	5 cut(s)	302, 487, 884, 949, 1559
Hin6I	GCGC	5 cut(s)	300, 485, 882, 947, 1557
HinP1I	GCGC	5 cut(s)	300, 485, 882, 947, 1557
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	7 cut(s)	575, 762, 1033, 1413, 1738, 1912, 1956
HpaII	CCGG	4 cut(s)	694, 711, 1148, 1617
HphI	GGTGA	7 cut(s)	94, 622, 859, 1015, 1363, 2104, 2264
Hpy166II	GTNNAC	4 cut(s)	496, 700, 1513, 1844
Hpy188I	TCNGA	7 cut(s)	138, 340, 436, 1461, 1548, 1964, 1995
Hpy188III	TCNNGA	5 cut(s)	407, 1322, 1742, 1770, 2204
Hpy8I	GTNNAC	4 cut(s)	496, 700, 1513, 1844
Hpy99I	CGWCG	2 cut(s)	161, 668
HpyCH4III	ACNGT	4 cut(s)	853, 1264, 1891, 2002
HpyCH4IV	ACGT	2 cut(s)	1268, 2111
HpyCH4V	TGCA	9 cut(s)	117, 898, 942, 1401, 1424, 1447, 1577, 1844, 1919
HpyF10VI	GCNNNNNNNGC	8 cut(s)	297, 366, 398, 418, 451, 929, 1932, 2366
HpyF3I	CTNAG	4 cut(s)	22, 125, 1977, 2135
HpySE526I	ACGT	2 cut(s)	1268, 2111
HspAI	GCGC	5 cut(s)	300, 485, 882, 947, 1557
Ksp22I	TGATCA	1 cut(s)	1543
Kzo9I	GATC	4 cut(s)	1235, 1543, 1596, 2176
LmnI	GCTCC	5 cut(s)	186, 307, 374, 409, 1258
Lsp1109I	GCAGC	3 cut(s)	515, 919, 1078
LweI	GCATC	4 cut(s)	1078, 1434, 1564, 1621
MaeI	CTAG	2 cut(s)	1085, 1613
MaeII	ACGT	2 cut(s)	1268, 2111
MaeIII	GTNAC	6 cut(s)	847, 1264, 1369, 1474, 1789, 1894
MalI	GATC	4 cut(s)	1237, 1545, 1598, 2178
MboI	GATC	4 cut(s)	1235, 1543, 1596, 2176
MfeI	CAATTG	1 cut(s)	1273
MhlI	GDGCHC	6 cut(s)	183, 414, 663, 1255, 1329, 1846
MluCI	AATT	9 cut(s)	320, 777, 797, 842, 1273, 2023, 2146, 2168, 2223
MlyI	GAGTC	2 cut(s)	771, 1407
MmeI	TCCRAC	3 cut(s)	208, 217, 270
MspA1I	CMGCKG	3 cut(s)	2372, 2402, 2462
MspCI	CTTAAG	1 cut(s)	1816
MspI	CCGG	4 cut(s)	694, 711, 1148, 1617
MspR9I	CCNGG	6 cut(s)	366, 398, 524, 695, 712, 830
MunI	CAATTG	1 cut(s)	1273
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	4 cut(s)	366, 398, 524, 830
MwoI	GCNNNNNNNGC	8 cut(s)	297, 366, 398, 418, 451, 929, 1932, 2366
NciI	CCSGG	2 cut(s)	695, 712
NcoI	CCATGG	1 cut(s)	1674
NdeII	GATC	4 cut(s)	1235, 1543, 1596, 2176
NlaIV	GGNNCC	2 cut(s)	370, 521
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	4 cut(s)	847, 1369, 1789, 1894
PagI	TCATGA	1 cut(s)	1741
PasI	CCCWGGG	1 cut(s)	523
PceI	AGGCCT	2 cut(s)	2133, 2195
PctI	GAATGC	1 cut(s)	392
PfeI	GAWTC	5 cut(s)	575, 1033, 1738, 1912, 1956
PkrI	GCNGC	7 cut(s)	293, 502, 505, 934, 1093, 2317, 2371
PleI	GAGTC	2 cut(s)	770, 1407
PpsI	GAGTC	2 cut(s)	770, 1407
Ppu21I	YACGTR	1 cut(s)	1269
PshBI	ATTAAT	2 cut(s)	1059, 1704
Psp124BI	GAGCTC	2 cut(s)	414, 1329
Psp1406I	AACGTT	1 cut(s)	2111
Psp6I	CCWGG	4 cut(s)	364, 396, 522, 828
PspEI	GGTNACC	1 cut(s)	1369
PspFI	CCCAGC	2 cut(s)	1664, 1826
PspGI	CCWGG	4 cut(s)	364, 396, 522, 828
PspN4I	GGNNCC	2 cut(s)	370, 521
PspPI	GGNCC	1 cut(s)	519
RsaI	GTAC	4 cut(s)	834, 1271, 1854, 1906
RsaNI	GTAC	4 cut(s)	833, 1270, 1853, 1905
SacI	GAGCTC	2 cut(s)	414, 1329
SatI	GCNGC	7 cut(s)	292, 501, 504, 933, 1092, 2316, 2370
Sau3AI	GATC	4 cut(s)	1235, 1543, 1596, 2176
Sau96I	GGNCC	1 cut(s)	519
ScaI	AGTACT	1 cut(s)	1854
SchI	GAGTC	2 cut(s)	771, 1407
ScrFI	CCNGG	6 cut(s)	366, 398, 524, 695, 712, 830
SduI	GDGCHC	6 cut(s)	183, 414, 663, 1255, 1329, 1846
SfaNI	GCATC	4 cut(s)	1078, 1434, 1564, 1621
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	1427, 1816
SmoI	CTYRAG	2 cut(s)	1427, 1816
SnaBI	TACGTA	1 cut(s)	1269
Sse9I	AATT	9 cut(s)	320, 777, 797, 842, 1273, 2023, 2146, 2168, 2223
SseBI	AGGCCT	2 cut(s)	2133, 2195
SsiI	CCGC	9 cut(s)	292, 390, 475, 501, 1193, 2315, 2370, 2400, 2460
SspI	AATATT	1 cut(s)	1519
SspMI	CTAG	2 cut(s)	1085, 1613
SstI	GAGCTC	2 cut(s)	414, 1329
StuI	AGGCCT	2 cut(s)	2133, 2195
StyD4I	CCNGG	6 cut(s)	364, 396, 522, 693, 710, 828
StyI	CCWWGG	2 cut(s)	1095, 1674
TaaI	ACNGT	4 cut(s)	853, 1264, 1891, 2002
TaiI	ACGT	2 cut(s)	1271, 2114
TaqI	TCGA	6 cut(s)	219, 327, 573, 663, 794, 2179
TaqII	GACCGA	1 cut(s)	507
TasI	AATT	9 cut(s)	320, 777, 797, 842, 1273, 2023, 2146, 2168, 2223
TatI	WGTACW	1 cut(s)	1852
TauI	GCSGC	4 cut(s)	294, 503, 2318, 2372
TfiI	GAWTC	5 cut(s)	575, 1033, 1738, 1912, 1956
TscAI	CASTG	6 cut(s)	657, 772, 1426, 1595, 1894, 2353
TseFI	GTSAC	4 cut(s)	847, 1369, 1789, 1894
TseI	GCWGC	3 cut(s)	503, 932, 1091
Tsp45I	GTSAC	4 cut(s)	847, 1369, 1789, 1894
TspDTI	ATGAA	8 cut(s)	17, 85, 582, 1205, 1355, 1730, 1904, 2093
TspGWI	ACGGA	2 cut(s)	294, 2275
TspRI	CASTG	6 cut(s)	657, 772, 1426, 1595, 1894, 2353
Vha464I	CTTAAG	1 cut(s)	1816
VneI	GTGCAC	1 cut(s)	1842
VpaK11BI	GGWCC	1 cut(s)	519
VspI	ATTAAT	2 cut(s)	1059, 1704
XapI	RAATTY	4 cut(s)	320, 797, 2023, 2223
XspI	CTAG	2 cut(s)	1085, 1613
ZrmI	AGTACT	1 cut(s)	1854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.