Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

23224016 .. 23228748

Gene Structure 4733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32150.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGAAGAGTTCAAAACCCCTCCTCCACCTCCTTAAACCCCAAACCCCCAAATCCAACTCCCCCTTGTTCCTCCTCACCCACCACCTCTGCACCAATCCCATCTCCAATCCTCACCACGACGACGACGACGACTACGACGACTCCCTCGTAACCCAAGTCCTCCAACTCCTCCAACCCAATGAGCAACACTGGAACTTCCCCCAACTCCAAACCCTCCTCTTCCCCAACTCCACCTCCTCTCCTTCACCCCGCTCCCTCCTCCACATCACCCGCCGGCTCGCCTCCCCCAACAAAGCCCTCAAATTCTTCGATTTCGTCTCCCAGAATCTCACCCCTCAGGACCCTCCAAAGGCCTTGCTCTCCTCCTCATTCCAGGCCCTTGTGGAGCTCACATTGCGACAACCCCCCTCCGAAACGAACCTTTATGAGCTCTACAAGATGGCCAAGGATCGAAACGTTCCGATTAGTCCCAAGGCCGCAGGGCTGCTTGTCCAGTCCATGGGGAGGGCTGGGATGGAGGAGGAGGCTCTAATAGTGTTTAATGAACTCGAGTCGGGGTTGAAAACTACTCATATTCGCAATGTGGTAATTGGGATGTCGCTGAAAATGGGGCGTGTTGATGGTGCACTGAAGGTGCTCGACGAAATGCTTGACCCAGAAGCAAATTTCCAGGTTGATGAGTATACTGTTGATGTTGTGGTTGGCTTGTTTTTAAGGGGAGAGATTAGAGGGAGGAGTGTCAGTGAGGAGGAAATTGCGGAGTTGGTGTCGAAATTTGGTGGGCGTGGCGTGTTTCCTAATAGCATGGTACTTACGAAATTGGTGAGTGGTTTGTGTAGGAACAGGAAGGTTAGTCTTGCTTGGGATGTTTTGCATGATGTCATGAAGAAGGGTGGTGCTGTAGAGGCTGCTCCATACAATGCGCTGTTGTCGGCTTTGGGGAGAGGGAATGAGTTTAAGAGGATGAGGGAGCTTATGGCGAAGATGGAAGAGATGGGGATTAAGCCCAATGTTATAACTTTTGGTATTCTTATTAATCGGTTATGCAAGTCTAGGAGAATAGGTGCTGCCATGGAGGTGTTTGAAAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGCTGAACCGGATGTGGTCATCTATAACACTCTGATTGATGGACTTTGTAAAGTGGGAAGGCAAGAAGAAGGTTTGCGTTTGATGGAAAAGATGAGATCTCAAAGTGGCTGTGCTCCTAATACTGTTACCTATAATATTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAAGGGCCATGAGCTCTTTGATAAAATGAAGGAAGAAGGGATACCAATGAATGTCTCCACCCTCAATACTATGCTTGATGGTCTGTCCAGGCGTGGGAGACTCAACACTGCACTTGAGTTCTTTAACGAAATGGAGAGGAAAGGTTTGAAAGGCAATGCTGTCACTTACACAATCTTAATCACTTCCTTTTGTAATGTGACCAATATTCGCAAGGCAATGGAGTTGTTTGATCAGATGTTGAGCTCTGGGTGTCCCACTGATGCAAAAGTTTACCACTGCTTGATTTCTGGTTTAAGCCAAGCCGGAAGGATGGAGGATGCCAGCTTTGTTGTCTCAAAGATGAAGGAGGCTGGGTTCTCCATGGATATCGTTTCTTACAATGGGATGATTCGTGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAGGTGTCTCGAGTGAAGCCTGATAGCGTAACATACAACACCTTGCTTGCCTACTTAGGCAAATCTGGGGACTTTGAAAGTGCACATAAAGTACTTGACAGGATGCTGAGTGAGGGTATTGTTCCCACTGTTGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGTGATATCGAAAAAGCCATGAGAATCTTCAGAGACATGGGATCTAACTCAAAGATACCTCCGAATACTGTAATCTACAATGATTTAATCAATTCTCTTTGCAAGAAGAATGATGCGGAACAAGCTCTTTCTTTGATGGAGGACATGAAAAAAAAGGGGGTGAGACCTAATACCCAAACATTCAATGCCCTGTTCAAAGGCCTTAGAGAGAACAATTTATTAAAGAAGGCATTTCAATTTATGGATCAAATGGTTGAAGAGGACTGTAATCCTGATTATATAACGATGGAGATTCTTACCGAATGGCTTCCTGGTGTTGGTGAAATAGAGAGGTTGAGAAAGTTTGCTCAAGGATATCCGGTTTCGGAGCCTCAGCCCCAACAGAAGGATGGGATAGTCGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

772

Amino Acids

86.08

Weight (kDa)

6.48

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	290 - 346	2.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	306 - 350	2.6e-10	PPR repeat family
PPR_1	PF12854	332 - 365	2.9e-10	PPR repeat
PPR_3	PF13812	374 - 421	1.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	374 - 404	2.5e-10	PPR repeat
PPR_2	PF13041	375 - 424	4.8e-17	PPR repeat family
PPR_1	PF12854	408 - 440	2.4e-10	PPR repeat
PPR_2	PF13041	411 - 459	2.7e-15	PPR repeat family
PPR	PF01535	414 - 444	1.6e-08	PPR repeat
PPR_1	PF12854	443 - 475	6.3e-08	PPR repeat
PPR_2	PF13041	447 - 495	1.4e-16	PPR repeat family
PPR	PF01535	450 - 479	8.1e-07	PPR repeat
PPR_3	PF13812	471 - 514	1.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	477 - 509	3.2e-09	PPR repeat
PPR_2	PF13041	482 - 529	3e-11	PPR repeat family
PPR_long	PF17177	483 - 638	1.6e-12	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	484 - 514	2.3e-06	PPR repeat
PPR_2	PF13041	518 - 563	1.6e-08	PPR repeat family
TPR_24	PF23276	532 - 648	1.7e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	540 - 600	9.6e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	552 - 595	2.2e-11	PPR repeat family
PPR_3	PF13812	576 - 632	3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	584 - 614	2.1e-06	PPR repeat
PPR_2	PF13041	586 - 634	1.8e-14	PPR repeat family
PPR	PF01535	589 - 619	8.2e-06	PPR repeat
PPR_3	PF13812	609 - 668	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	618 - 649	2.3e-10	PPR repeat
PPR_long	PF17177	639 - 736	2.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	644 - 702	9.6e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	654 - 729	1.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	655 - 686	3.7e-07	PPR repeat
PPR_2	PF13041	657 - 704	1.7e-17	PPR repeat family
PPR	PF01535	660 - 690	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1016
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	683
AciI	CCGC	5 cut(s)	250, 271, 477, 758, 2024
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	3 cut(s)	456, 1957, 2160
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	3 cut(s)	302, 664, 773
AcuI	CTGAAG	2 cut(s)	650, 1921
AfaI	GTAC	3 cut(s)	810, 1830, 1882
AfiI	CCNNNNNNNGG	6 cut(s)	349, 499, 504, 1383, 2225, 2293
AjnI	CCWGG	4 cut(s)	372, 669, 1376, 2218
AloI	GAACNNNNNNTCC	2 cut(s)	1628, 1660
AluBI	AGCT	7 cut(s)	388, 430, 973, 1303, 1533, 1614, 2033
AluI	AGCT	7 cut(s)	388, 430, 973, 1303, 1533, 1614, 2033
Alw21I	GWGCWC	8 cut(s)	390, 432, 628, 639, 1231, 1305, 1535, 1822
Alw26I	GTCTC	7 cut(s)	322, 1348, 1381, 1627, 1749, 1935, 2065
Alw44I	GTGCAC	2 cut(s)	624, 1818
AlwI	GGATC	3 cut(s)	456, 1957, 2160
Ama87I	CYCGRG	2 cut(s)	548, 1746
AoxI	GGCC	6 cut(s)	351, 375, 441, 474, 1294, 2107
ApaLI	GTGCAC	2 cut(s)	624, 1818
ApeKI	GCWGC	3 cut(s)	484, 908, 1067
ApoI	RAATTY	3 cut(s)	302, 664, 773
AseI	ATTAAT	1 cut(s)	1035
Asp700I	GAANNNNTTC	1 cut(s)	2214
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	3 cut(s)	340, 376, 1294
AsuHPI	GGTGA	9 cut(s)	67, 104, 237, 259, 322, 835, 1922, 2080, 2240
AvaI	CYCGRG	2 cut(s)	548, 1746
AvaII	GGWCC	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	336
BaeGI	GKGCMC	2 cut(s)	628, 1822
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	4 cut(s)	390, 432, 1305, 1535
BarI	GAAGNNNNNNTAC	2 cut(s)	1314, 1346
Bbv12I	GWGCWC	8 cut(s)	390, 432, 628, 639, 1231, 1305, 1535, 1822
BbvCI	CCTCAGC	1 cut(s)	2280
BbvI	GCAGC	3 cut(s)	471, 895, 1054
BciT130I	CCWGG	4 cut(s)	374, 671, 1378, 2220
BciVI	GTATCC	1 cut(s)	1323
BclI	TGATCA	1 cut(s)	1519
BcoDI	GTCTC	7 cut(s)	322, 1348, 1381, 1627, 1749, 1935, 2065
BfaI	CTAG	1 cut(s)	1053
BfmI	CTRYAG	1 cut(s)	900
BfuI	GTATCC	1 cut(s)	1323
BglII	AGATCT	1 cut(s)	1211
BisI	GCNGC	4 cut(s)	477, 485, 909, 1068
BlsI	GCNGC	4 cut(s)	478, 486, 910, 1069
BmcAI	AGTACT	1 cut(s)	1830
Bme1390I	CCNGG	4 cut(s)	374, 671, 1378, 2220
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	548, 1746
BmgT120I	GGNCC	3 cut(s)	340, 376, 1294
BmiI	GGNNCC	2 cut(s)	342, 2277
BmrFI	CCNGG	4 cut(s)	374, 671, 1378, 2220
BmsI	GCATC	4 cut(s)	1540, 1597, 1830, 2011
BpmI	CTGGAG	1 cut(s)	1675
Bpu10I	CCTNAGC	1 cut(s)	2280
BpuEI	CTTGAG	2 cut(s)	1424, 2241
BsaI	GGTCTC	1 cut(s)	2065
BsaJI	CCNNGG	5 cut(s)	444, 471, 498, 1071, 1650
BsaWI	WCCGGW	2 cut(s)	1123, 2266
Bsc4I	CCNNNNNNNGG	6 cut(s)	349, 499, 504, 1383, 2225, 2293
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	3 cut(s)	194, 493, 1692
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	5 cut(s)	392, 586, 1450, 1512, 1897
BseBI	CCWGG	4 cut(s)	374, 671, 1378, 2220
BseDI	CCNNGG	5 cut(s)	444, 471, 498, 1071, 1650
BseLI	CCNNNNNNNGG	6 cut(s)	349, 499, 504, 1383, 2225, 2293
BseMI	GCAATG	5 cut(s)	392, 586, 1450, 1512, 1897
BseMII	CTCAG	3 cut(s)	350, 1835, 2294
BseNI	ACTGG	3 cut(s)	194, 493, 1692
BseSI	GKGCMC	2 cut(s)	628, 1822
BseXI	GCAGC	3 cut(s)	471, 895, 1054
BseYI	CCCAGC	2 cut(s)	509, 1640
BsgI	GTGCAG	2 cut(s)	73, 1383
BshFI	GGCC	6 cut(s)	353, 377, 443, 476, 1296, 2109
BsiHKAI	GWGCWC	8 cut(s)	390, 432, 628, 639, 1231, 1305, 1535, 1822
BsiHKCI	CYCGRG	2 cut(s)	548, 1746
BsiSI	CCGG	4 cut(s)	274, 1124, 1593, 2267
BslFI	GGGAC	4 cut(s)	453, 1295, 1527, 1820
BslI	CCNNNNNNNGG	6 cut(s)	349, 499, 504, 1383, 2225, 2293
BsmAI	GTCTC	7 cut(s)	322, 1348, 1381, 1627, 1749, 1935, 2065
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	4 cut(s)	453, 1295, 1527, 1820
BsnI	GGCC	6 cut(s)	353, 377, 443, 476, 1296, 2109
Bso31I	GGTCTC	1 cut(s)	2065
BsoBI	CYCGRG	2 cut(s)	548, 1746
Bsp1286I	GDGCHC	8 cut(s)	390, 432, 628, 639, 1231, 1305, 1535, 1822
Bsp143I	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
Bsp19I	CCATGG	3 cut(s)	498, 1071, 1650
BspACI	CCGC	5 cut(s)	250, 271, 477, 758, 2024
BspANI	GGCC	6 cut(s)	353, 377, 443, 476, 1296, 2109
BspCNI	CTCAG	3 cut(s)	349, 1836, 2293
BspHI	TCATGA	2 cut(s)	882, 1717
BspLI	GGNNCC	2 cut(s)	342, 2277
BspPI	GGATC	3 cut(s)	456, 1957, 2160
BspTNI	GGTCTC	1 cut(s)	2065
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	5 cut(s)	392, 586, 1450, 1512, 1897
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	3 cut(s)	194, 493, 1692
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	5 cut(s)	444, 471, 498, 1071, 1650
BssMI	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
BssNAI	GTATAC	1 cut(s)	684
BssT1I	CCWWGG	5 cut(s)	444, 471, 498, 1071, 1650
Bst1107I	GTATAC	1 cut(s)	684
Bst2UI	CCWGG	4 cut(s)	374, 671, 1378, 2220
Bst4CI	ACNGT	5 cut(s)	688, 1240, 1867, 1978, 2174
Bst6I	CTCTTC	3 cut(s)	224, 984, 2160
BstC8I	GCNNGC	4 cut(s)	275, 279, 1612, 1785
BstDEI	CTNAG	5 cut(s)	336, 1792, 1844, 2111, 2280
BstDSI	CCRYGG	3 cut(s)	498, 1071, 1650
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	5 cut(s)	451, 1214, 1522, 1952, 2155
BstMAI	GTCTC	7 cut(s)	322, 1348, 1381, 1627, 1749, 1935, 2065
BstMBI	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 905, 2030
BstNI	CCWGG	4 cut(s)	374, 671, 1378, 2220
BstSCI	CCNGG	4 cut(s)	372, 669, 1376, 2218
BstSFI	CTRYAG	1 cut(s)	900
BstSLI	GKGCMC	2 cut(s)	628, 1822
BstV1I	GCAGC	3 cut(s)	471, 895, 1054
BstX2I	RGATCY	2 cut(s)	1211, 1949
BstYI	RGATCY	2 cut(s)	1211, 1949
BstZ17I	GTATAC	1 cut(s)	684
Bsu36I	CCTNAGG	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	1323
BsuRI	GGCC	6 cut(s)	353, 377, 443, 476, 1296, 2109
BtgI	CCRYGG	3 cut(s)	498, 1071, 1650
BtsI	GCAGTG	2 cut(s)	1395, 1564
BtsIMutI	CAGTG	7 cut(s)	187, 626, 748, 1395, 1545, 1564, 1863
Cac8I	GCNNGC	4 cut(s)	275, 279, 1612, 1785
CciI	TCATGA	2 cut(s)	882, 1717
CfoI	GCGC	1 cut(s)	925
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	3 cut(s)	340, 376, 1294
Csp6I	GTAC	3 cut(s)	809, 1829, 1881
CviQI	GTAC	3 cut(s)	809, 1829, 1881
DdeI	CTNAG	5 cut(s)	336, 1792, 1844, 2111, 2280
DpnI	GATC	5 cut(s)	450, 1213, 1521, 1951, 2154
DpnII	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	224, 984, 2160
EarI	CTCTTC	3 cut(s)	224, 984, 2160
Ecl136II	GAGCTC	4 cut(s)	388, 430, 1303, 1533
Eco130I	CCWWGG	5 cut(s)	444, 471, 498, 1071, 1650
Eco147I	AGGCCT	2 cut(s)	353, 2109
Eco24I	GRGCYC	4 cut(s)	390, 432, 1305, 1535
Eco31I	GGTCTC	1 cut(s)	2065
Eco32I	GATATC	3 cut(s)	1657, 1915, 2264
Eco47I	GGWCC	1 cut(s)	340
Eco53kI	GAGCTC	4 cut(s)	388, 430, 1303, 1533
Eco57I	CTGAAG	2 cut(s)	650, 1921
Eco81I	CCTNAGG	1 cut(s)	336
Eco88I	CYCGRG	2 cut(s)	548, 1746
EcoICRI	GAGCTC	4 cut(s)	388, 430, 1303, 1533
EcoO109I	RGGNCCY	2 cut(s)	340, 376
EcoRII	CCWGG	4 cut(s)	372, 669, 1376, 2218
EcoRV	GATATC	3 cut(s)	1657, 1915, 2264
EcoT14I	CCWWGG	5 cut(s)	444, 471, 498, 1071, 1650
EcoT38I	GRGCYC	4 cut(s)	390, 432, 1305, 1535
ErhI	CCWWGG	5 cut(s)	444, 471, 498, 1071, 1650
Esp3I	CGTCTC	1 cut(s)	322
FaqI	GGGAC	4 cut(s)	453, 1295, 1527, 1820
FauI	CCCGC	2 cut(s)	257, 278
FbaI	TGATCA	1 cut(s)	1519
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	4 cut(s)	477, 485, 909, 1068
FriOI	GRGCYC	4 cut(s)	390, 432, 1305, 1535
Fsp4HI	GCNGC	4 cut(s)	477, 485, 909, 1068
FspBI	CTAG	1 cut(s)	1053
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	4 cut(s)	477, 485, 909, 1068
GsaI	CCCAGC	2 cut(s)	513, 1644
GsuI	CTGGAG	1 cut(s)	1675
HaeIII	GGCC	6 cut(s)	353, 377, 443, 476, 1296, 2109
HapII	CCGG	4 cut(s)	274, 1124, 1593, 2267
HhaI	GCGC	1 cut(s)	925
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HinfI	GANTC	9 cut(s)	140, 325, 551, 1389, 1678, 1714, 1888, 1932, 2200
HpaII	CCGG	4 cut(s)	274, 1124, 1593, 2267
HphI	GGTGA	9 cut(s)	67, 104, 237, 259, 322, 835, 1922, 2080, 2240
Hpy166II	GTNNAC	4 cut(s)	626, 684, 1561, 1820
Hpy188I	TCNGA	7 cut(s)	412, 462, 1149, 1524, 1940, 1971, 2275
Hpy188III	TCNNGA	5 cut(s)	338, 883, 1718, 1746, 2180
Hpy8I	GTNNAC	4 cut(s)	626, 684, 1561, 1820
Hpy99I	CGWCG	6 cut(s)	122, 125, 128, 131, 140, 644
HpyCH4III	ACNGT	5 cut(s)	688, 1240, 1867, 1978, 2174
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	9 cut(s)	90, 626, 874, 1047, 1400, 1553, 1820, 1895, 2010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 905, 2030
HpyF3I	CTNAG	5 cut(s)	336, 1792, 1844, 2111, 2280
HpySE526I	ACGT	1 cut(s)	456
HspAI	GCGC	1 cut(s)	923
KroI	GCCGGC	1 cut(s)	273
KroNI	GCCGGC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	1519
Kzo9I	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
LmnI	GCTCC	6 cut(s)	257, 385, 916, 970, 1234, 2275
Lsp1109I	GCAGC	3 cut(s)	471, 895, 1054
LweI	GCATC	4 cut(s)	1540, 1597, 1830, 2011
MaeI	CTAG	1 cut(s)	1053
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	6 cut(s)	148, 1240, 1450, 1486, 1765, 1870
MalI	GATC	5 cut(s)	450, 1213, 1521, 1951, 2154
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
MflI	RGATCY	2 cut(s)	1211, 1949
MhlI	GDGCHC	8 cut(s)	390, 432, 628, 639, 1231, 1305, 1535, 1822
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	9 cut(s)	302, 588, 664, 753, 773, 818, 1999, 2122, 2144
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	3 cut(s)	134, 560, 1383
MmeI	TCCRAC	3 cut(s)	78, 187, 196
Mox20I	TGGCCA	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	2214
MscI	TGGCCA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	1076
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	4 cut(s)	274, 1124, 1593, 2267
MspR9I	CCNGG	4 cut(s)	374, 671, 1378, 2220
MvaI	CCWGG	4 cut(s)	374, 671, 1378, 2220
MwoI	GCNNNNNNNGC	3 cut(s)	394, 905, 2030
NaeI	GCCGGC	1 cut(s)	275
NcoI	CCATGG	3 cut(s)	498, 1071, 1650
NdeII	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
NgoMIV	GCCGGC	1 cut(s)	273
NlaIV	GGNNCC	2 cut(s)	342, 2277
NmuCI	GTSAC	3 cut(s)	1450, 1486, 1870
PaeR7I	CTCGAG	2 cut(s)	548, 1746
PagI	TCATGA	2 cut(s)	882, 1717
PceI	AGGCCT	2 cut(s)	353, 2109
PcsI	WCGNNNNNNNCGW	5 cut(s)	123, 126, 132, 135, 144
PdiI	GCCGGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	2214
PfeI	GAWTC	6 cut(s)	325, 1678, 1714, 1888, 1932, 2200
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	478, 486, 910, 1069
PleI	GAGTC	3 cut(s)	134, 559, 1383
PpsI	GAGTC	3 cut(s)	134, 559, 1383
PpuMI	RGGWCCY	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	1035
PsiI	TTATAA	1 cut(s)	1016
Psp124BI	GAGCTC	4 cut(s)	390, 432, 1305, 1535
Psp1406I	AACGTT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	4 cut(s)	372, 669, 1376, 2218
PspFI	CCCAGC	2 cut(s)	509, 1640
PspGI	CCWGG	4 cut(s)	372, 669, 1376, 2218
PspN4I	GGNNCC	2 cut(s)	342, 2277
PspPI	GGNCC	3 cut(s)	340, 376, 1294
PspPPI	RGGWCCY	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	1211, 1949
RsaI	GTAC	3 cut(s)	810, 1830, 1882
RsaNI	GTAC	3 cut(s)	809, 1829, 1881
RseI	CAYNNNNRTG	1 cut(s)	1076
SacI	GAGCTC	4 cut(s)	390, 432, 1305, 1535
SatI	GCNGC	4 cut(s)	477, 485, 909, 1068
Sau3AI	GATC	5 cut(s)	448, 1211, 1519, 1949, 2152
Sau96I	GGNCC	3 cut(s)	340, 376, 1294
ScaI	AGTACT	1 cut(s)	1830
SchI	GAGTC	3 cut(s)	134, 560, 1383
ScrFI	CCNGG	4 cut(s)	374, 671, 1378, 2220
SduI	GDGCHC	8 cut(s)	390, 432, 628, 639, 1231, 1305, 1535, 1822
SfaNI	GCATC	4 cut(s)	1540, 1597, 1830, 2011
SfcI	CTRYAG	1 cut(s)	900
Sfr274I	CTCGAG	2 cut(s)	548, 1746
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	2 cut(s)	548, 1746
SmiMI	CAYNNNNRTG	1 cut(s)	1076
SmlI	CTYRAG	4 cut(s)	548, 1403, 1746, 2256
SmoI	CTYRAG	4 cut(s)	548, 1403, 1746, 2256
Sse9I	AATT	9 cut(s)	302, 588, 664, 753, 773, 818, 1999, 2122, 2144
SseBI	AGGCCT	2 cut(s)	353, 2109
SsiI	CCGC	5 cut(s)	250, 271, 477, 758, 2024
SspI	AATATT	2 cut(s)	1252, 1495
SspMI	CTAG	1 cut(s)	1053
SstI	GAGCTC	4 cut(s)	390, 432, 1305, 1535
StuI	AGGCCT	2 cut(s)	353, 2109
StyD4I	CCNGG	4 cut(s)	372, 669, 1376, 2218
StyI	CCWWGG	5 cut(s)	444, 471, 498, 1071, 1650
TaaI	ACNGT	5 cut(s)	688, 1240, 1867, 1978, 2174
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	7 cut(s)	309, 451, 549, 639, 770, 1747, 1917
TasI	AATT	9 cut(s)	302, 588, 664, 753, 773, 818, 1999, 2122, 2144
TatI	WGTACW	1 cut(s)	1828
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	6 cut(s)	325, 1678, 1714, 1888, 1932, 2200
TscAI	CASTG	7 cut(s)	194, 633, 748, 1402, 1552, 1571, 1870
TseFI	GTSAC	3 cut(s)	1450, 1486, 1870
TseI	GCWGC	3 cut(s)	484, 908, 1067
Tsp45I	GTSAC	3 cut(s)	1450, 1486, 1870
TspDTI	ATGAA	9 cut(s)	17, 558, 899, 1331, 1352, 1646, 1706, 1880, 2069
TspRI	CASTG	7 cut(s)	194, 633, 748, 1402, 1552, 1571, 1870
Van91I	CCANNNNNTGG	1 cut(s)	499
VneI	GTGCAC	2 cut(s)	624, 1818
VpaK11BI	GGWCC	1 cut(s)	340
VspI	ATTAAT	1 cut(s)	1035
XapI	RAATTY	3 cut(s)	302, 664, 773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2294
XhoI	CTCGAG	2 cut(s)	548, 1746
XmiI	GTMKAC	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	2214
XspI	CTAG	1 cut(s)	1053
ZrmI	AGTACT	1 cut(s)	1830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.