Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004842.1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

48719 .. 49522

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004842.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atggaagagatgggcattaagcccgatgttataacttttggtattcttatcaatcggttatgcaagtctaggagaatagatgctgccttggaggtgtttgaaaagatgagtggaggagtaaatggggtttcggctgaaccagatgtgatcatctataacactctgattgatggactttgcaaagtgggaaggcaggaagaaggattgcgtttgatggaaaggatgagatcgcaaggtggctgtactccttacactgttacgtacaattgtttgattgatggcttcaacaaagttggggacattgagaggggccgtgagctctttgataaaatgaaggaggaagggataccgctaaatgtggccacctttaatactttgcttgatggtctgtgcaggcatgtgagactcaacactgcatttgacttcttcaatgaaatgcagagggatggtctgaaaagcaatgctgtcacttacacaatcttaatcacttccttttgtaatgtgaacaatattagcaaggcattggagttgtttaatcagatgttgagcgctgaatgtcccacagatgcaatagtttaccactgcttgatctctggtttaagtcaagctggaaggatggaggatgccagctttgttgtttcgaagttgaaggaggctggtttctctatggatatcgtttcctacaatgttatgattaatgggttctccagaagcttccttattcttagaattaatataccccaaagtatttgtttattgacacgcctcaatataaggttatgcctttcattagtgtcttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

267

Amino Acids

29.82

Weight (kDa)

5.83

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AciI	CCGC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	360
AfaI	GTAC	2 cut(s)	244, 263
AfeI	AGCGCT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	101, 286, 430, 649
AluBI	AGCT	4 cut(s)	319, 608, 630, 714
AluI	AGCT	4 cut(s)	319, 608, 630, 714
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	397
Aor51HI	AGCGCT	1 cut(s)	550
AoxI	GGCC	2 cut(s)	310, 360
ApeKI	GCWGC	1 cut(s)	83
AseI	ATTAAT	2 cut(s)	696, 732
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	7 cut(s)	4, 164, 208, 272, 377, 440, 610
BceAI	ACGGC	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	339
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	311
BmsI	GCATC	3 cut(s)	70, 556, 613
BpmI	CTGGAG	1 cut(s)	691
Bpu14I	TTCGAA	1 cut(s)	641
BsaAI	YACGTR	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	4 cut(s)	228, 451, 621, 628
BseMI	GCAATG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	412
BshFI	GGCC	2 cut(s)	312, 362
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	311, 543
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	311, 543
BsnI	GGCC	2 cut(s)	312, 362
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	147, 227, 588
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	2 cut(s)	312, 362
BspLI	GGNNCC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	147, 227, 588
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	395, 628
BstDEI	CTNAG	1 cut(s)	725
BstF5I	GGATG	4 cut(s)	228, 451, 621, 628
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	3 cut(s)	150, 230, 591
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	147, 227, 588
BstNSI	RCATGY	1 cut(s)	401
BstSNI	TACGTA	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	312, 362
BtsCI	GGATG	4 cut(s)	228, 451, 621, 628
BtsI	GCAGTG	2 cut(s)	411, 580
BtsIMutI	CAGTG	3 cut(s)	252, 411, 580
Cac8I	GCNNGC	2 cut(s)	395, 628
CfoI	GCGC	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	243, 262
CviAII	CATG	1 cut(s)	398
CviQI	GTAC	2 cut(s)	243, 262
DdeI	CTNAG	1 cut(s)	725
DpnI	GATC	3 cut(s)	149, 229, 590
DpnII	GATC	3 cut(s)	147, 227, 588
EaeI	YGGCCR	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	319
Eco105I	TACGTA	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	673
Eco47III	AGCGCT	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	401
FaiI	YATR	9 cut(s)	32, 61, 156, 399, 668, 692, 737, 773, 781
FaqI	GGGAC	2 cut(s)	311, 543
FatI	CATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	4 cut(s)	235, 458, 628, 635
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	691
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	312, 362
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	1 cut(s)	401
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	1 cut(s)	405
Hpy166II	GTNNAC	2 cut(s)	505, 577
Hpy188I	TCNGA	3 cut(s)	165, 453, 540
Hpy188III	TCNNGA	1 cut(s)	708
Hpy8I	GTNNAC	2 cut(s)	505, 577
HpyAV	CCTTC	6 cut(s)	183, 194, 328, 335, 606, 643
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	6 cut(s)	63, 180, 393, 416, 439, 569
HpyF3I	CTNAG	1 cut(s)	725
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	401
HspAI	GCGC	1 cut(s)	549
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	147, 227, 588
LpnPI	CCDG	8 cut(s)	153, 179, 379, 579, 594, 640, 642, 721
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	3 cut(s)	70, 556, 613
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	256, 466
MalI	GATC	3 cut(s)	149, 229, 590
MboI	GATC	3 cut(s)	147, 227, 588
MboII	GAAGA	3 cut(s)	17, 209, 418
MfeI	CAATTG	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	265, 729
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	399
MnlI	CCTC	8 cut(s)	85, 107, 300, 331, 435, 613, 646, 776
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	8 cut(s)	18, 369, 482, 534, 599, 696, 732, 802
Msp20I	TGGCCA	1 cut(s)	362
MunI	CAATTG	1 cut(s)	265
NdeII	GATC	3 cut(s)	147, 227, 588
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	1 cut(s)	311
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	401
NspV	TTCGAA	1 cut(s)	641
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
Ppu21I	YACGTR	1 cut(s)	261
PshBI	ATTAAT	2 cut(s)	696, 732
PsiI	TTATAA	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	310
RsaI	GTAC	2 cut(s)	244, 263
RsaNI	GTAC	2 cut(s)	243, 262
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	8 cut(s)	18, 369, 482, 534, 599, 696, 732, 802
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	147, 227, 588
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	9 cut(s)	96, 238, 263, 321, 368, 610, 632, 716, 779
SfaNI	GCATC	3 cut(s)	70, 556, 613
SfuI	TTCGAA	1 cut(s)	641
SnaBI	TACGTA	1 cut(s)	261
Sse9I	AATT	2 cut(s)	265, 729
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	641
TasI	AATT	2 cut(s)	265, 729
TatI	WGTACW	1 cut(s)	242
Tru1I	TTAA	8 cut(s)	18, 369, 482, 534, 599, 696, 732, 802
Tru9I	TTAA	8 cut(s)	18, 369, 482, 534, 599, 696, 732, 802
TscAI	CASTG	3 cut(s)	259, 418, 587
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	347, 447, 777
TspRI	CASTG	3 cut(s)	259, 418, 587
VspI	ATTAAT	2 cut(s)	696, 732
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.