Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

36745009 .. 36748454

Gene Structure 3446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0257700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCAAATTCAGAGACAGGATGGAAGATTTCAAAGACGCTGTGCGCCAAGCTGCCATTTCTTCCGGCTACAACGAGTCCAAATTGGCAGCGATTATGGCCAAGTTCATTATACATGCACCTCGCCAAAGGTCTCCTTTCACCAGAGCTGCTTACAAGACGCTTGAAAGCATTGGAGCTCTGGAACAGTTTATGTTGAAACATCGAAAGGATTATGTGGATCGGCATCGCACCACTGAACATGAGAGAGATAGCATTGAGCAGGAAGTTAATGCTTTTATTAAAGCGTGCCAAGAACAAATTAATGTTCTCAAAAATAGCATTAATGATGAGGAGGCACAGTCAAAGGGCTGGCTTGGTATTAGGGCTGATCACTCTAATGCTGATACTATAGCACACAAGCATGGGGTGGTTTTGATTTTAAGTGAGAGACTTCATTCTGTCACGTCACAGTATGATCAGCTAAGATCCATACGCTTCCAAGATACCTTTAGCAGAGCAACACCAAGAAGAAAACTTAACCGGAATCCCAAATCAAAATCCGAAGATACCTCCAATTCTAACAATTTAGAGGTCCGAGAACCTGAAGCATTTCAGGCGCAGTCTCTAACCGTCCAACAACAGCTCTTGGATGATGAAACACGCACCCTTCAGGTAGAGCTGACTAGCCTTCTAGATGCAGTTCAGGAAACTGAAACTAAGATGGTGGAAATGTCTGCACTAAATCACCTTCTGTCTACACATGTTCTGCAACAACGTGAACAGATAGAGCAACTATATGACCAGGCAGTTGAAGCCACACATAATGTAGATCTCGGCAACAAAGAGCTTTCCAAAGCAATCCAGAGAAATACCGGCAGCAGGACCTTTCTTTTGCTCTTCCTATTTGTACTTACTTTTTCCATTATCTTCCTTGATTGGTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

309

Amino Acids

35.64

Weight (kDa)

6.43

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin-18_N	PF10496	6 - 86	7.7e-17	SNARE-complex protein Syntaxin-18 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	737
AclWI	GGATC	2 cut(s)	228, 462
AcoI	YGGCCR	2 cut(s)	3, 99
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	606, 635
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	1 cut(s)	861
AflIII	ACRYGT	1 cut(s)	742
AgsI	TTSAA	4 cut(s)	34, 167, 199, 794
AjiI	CACGTC	1 cut(s)	447
AjnI	CCWGG	1 cut(s)	783
AluBI	AGCT	7 cut(s)	53, 149, 179, 463, 625, 661, 829
AluI	AGCT	7 cut(s)	53, 149, 179, 463, 625, 661, 829
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	4 cut(s)	9, 138, 424, 609
AlwI	GGATC	2 cut(s)	228, 462
AoxI	GGCC	2 cut(s)	3, 99
ApeKI	GCWGC	4 cut(s)	53, 89, 149, 858
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
AseI	ATTAAT	2 cut(s)	303, 324
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	2 cut(s)	48, 601
AspS9I	GGNCC	2 cut(s)	574, 864
AsuHPI	GGTGA	2 cut(s)	133, 719
AvaII	GGWCC	2 cut(s)	574, 864
BalI	TGGCCA	2 cut(s)	5, 101
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	4 cut(s)	40, 101, 136, 870
BccI	CCATC	2 cut(s)	16, 697
BciT130I	CCWGG	1 cut(s)	785
BclI	TGATCA	2 cut(s)	370, 457
BcoDI	GTCTC	4 cut(s)	9, 138, 424, 609
BfaI	CTAG	2 cut(s)	666, 674
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	4 cut(s)	54, 90, 150, 859
BlsI	GCNGC	4 cut(s)	55, 91, 151, 860
Bme1390I	CCNGG	1 cut(s)	785
Bme18I	GGWCC	2 cut(s)	574, 864
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	574, 864
BmrFI	CCNGG	1 cut(s)	785
BmsI	GCATC	2 cut(s)	235, 667
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	861
Bse118I	RCCGGY	1 cut(s)	854
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	785
BseGI	GGATG	2 cut(s)	27, 637
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	861
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	4 cut(s)	40, 101, 136, 870
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	5, 101
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	66, 523, 855
BslI	CCNNNNNNNGG	1 cut(s)	861
BsmAI	GTCTC	4 cut(s)	9, 138, 424, 609
BsnI	GGCC	2 cut(s)	5, 101
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	220, 370, 457, 467, 811
BspANI	GGCC	2 cut(s)	5, 101
BspPI	GGATC	2 cut(s)	228, 462
BspQI	GCTCTTC	1 cut(s)	884
BspTNI	GGTCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	854
BssAI	RCCGGY	1 cut(s)	854
BssMI	GATC	5 cut(s)	220, 370, 457, 467, 811
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	4 cut(s)	189, 342, 453, 613
Bst6I	CTCTTC	1 cut(s)	884
BstC8I	GCNNGC	2 cut(s)	289, 353
BstDEI	CTNAG	2 cut(s)	464, 699
BstF5I	GGATG	2 cut(s)	27, 637
BstHHI	GCGC	2 cut(s)	48, 601
BstKTI	GATC	5 cut(s)	223, 373, 460, 470, 814
BstMAI	GTCTC	4 cut(s)	9, 138, 424, 609
BstMBI	GATC	5 cut(s)	220, 370, 457, 467, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 596, 794
BstNI	CCWGG	1 cut(s)	785
BstNSI	RCATGY	2 cut(s)	119, 746
BstSCI	CCNGG	1 cut(s)	783
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	40, 101, 136, 870
BstX2I	RGATCY	2 cut(s)	467, 811
BstYI	RGATCY	2 cut(s)	467, 811
BsuRI	GGCC	2 cut(s)	5, 101
BtgZI	GCGATG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	27, 637
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	289, 353
CfoI	GCGC	2 cut(s)	48, 601
Cfr10I	RCCGGY	1 cut(s)	854
Cfr13I	GGNCC	2 cut(s)	574, 864
CseI	GACGC	2 cut(s)	47, 169
Csp6I	GTAC	1 cut(s)	890
CviAII	CATG	4 cut(s)	116, 242, 404, 743
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	2 cut(s)	464, 699
DpnI	GATC	5 cut(s)	222, 372, 459, 469, 813
DpnII	GATC	5 cut(s)	220, 370, 457, 467, 811
EaeI	YGGCCR	2 cut(s)	3, 99
Eam1104I	CTCTTC	1 cut(s)	884
EarI	CTCTTC	1 cut(s)	884
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	574, 864
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	606, 635
EcoICRI	GAGCTC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	4 cut(s)	119, 245, 407, 746
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	4 cut(s)	115, 241, 403, 742
FbaI	TGATCA	2 cut(s)	370, 457
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	4 cut(s)	54, 90, 150, 859
FokI	GGATG	2 cut(s)	34, 644
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	4 cut(s)	54, 90, 150, 859
FspBI	CTAG	2 cut(s)	666, 674
GlaI	GCGC	2 cut(s)	47, 600
GluI	GCNGC	4 cut(s)	54, 90, 150, 859
HaeIII	GGCC	2 cut(s)	5, 101
HapII	CCGG	3 cut(s)	66, 523, 855
HgaI	GACGC	2 cut(s)	47, 169
HhaI	GCGC	2 cut(s)	48, 601
Hin1II	CATG	4 cut(s)	119, 245, 407, 746
Hin6I	GCGC	2 cut(s)	46, 599
HinP1I	GCGC	2 cut(s)	46, 599
HinfI	GANTC	2 cut(s)	77, 526
HpaII	CCGG	3 cut(s)	66, 523, 855
HphI	GGTGA	2 cut(s)	133, 719
Hpy166II	GTNNAC	2 cut(s)	738, 761
Hpy188I	TCNGA	3 cut(s)	14, 544, 578
Hpy188III	TCNNGA	4 cut(s)	182, 674, 686, 844
Hpy8I	GTNNAC	2 cut(s)	738, 761
HpyAV	CCTTC	3 cut(s)	659, 680, 740
HpyCH4III	ACNGT	4 cut(s)	189, 342, 453, 613
HpyCH4IV	ACGT	2 cut(s)	446, 757
HpyCH4V	TGCA	4 cut(s)	119, 680, 719, 751
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 596, 794
HpyF3I	CTNAG	2 cut(s)	464, 699
HpySE526I	ACGT	2 cut(s)	446, 757
Hsp92II	CATG	4 cut(s)	119, 245, 407, 746
HspAI	GCGC	2 cut(s)	46, 599
Ksp22I	TGATCA	2 cut(s)	370, 457
Kzo9I	GATC	5 cut(s)	220, 370, 457, 467, 811
LguI	GCTCTTC	1 cut(s)	884
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	4 cut(s)	40, 101, 136, 870
LweI	GCATC	2 cut(s)	235, 667
MaeI	CTAG	2 cut(s)	666, 674
MaeII	ACGT	2 cut(s)	446, 757
MaeIII	GTNAC	2 cut(s)	442, 447
MalI	GATC	5 cut(s)	222, 372, 459, 469, 813
MboI	GATC	5 cut(s)	220, 370, 457, 467, 811
MboII	GAAGA	6 cut(s)	38, 54, 522, 557, 871, 901
MflI	RGATCY	2 cut(s)	467, 811
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	2 cut(s)	5, 101
MluCI	AATT	5 cut(s)	8, 83, 300, 556, 565
MluNI	TGGCCA	2 cut(s)	5, 101
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	5 cut(s)	132, 325, 328, 562, 565
Mox20I	TGGCCA	2 cut(s)	5, 101
MroXI	GAANNNNTTC	1 cut(s)	591
MscI	TGGCCA	2 cut(s)	5, 101
MseI	TTAA	7 cut(s)	270, 282, 303, 324, 422, 519, 928
MslI	CAYNNNNRTG	2 cut(s)	378, 402
Msp20I	TGGCCA	2 cut(s)	5, 101
MspI	CCGG	3 cut(s)	66, 523, 855
MspR9I	CCNGG	1 cut(s)	785
MvaI	CCWGG	1 cut(s)	785
MwoI	GCNNNNNNNGC	3 cut(s)	98, 596, 794
NdeII	GATC	5 cut(s)	220, 370, 457, 467, 811
NlaIII	CATG	4 cut(s)	119, 245, 407, 746
NmeAIII	GCCGAG	1 cut(s)	795
NmuCI	GTSAC	2 cut(s)	442, 447
NspI	RCATGY	2 cut(s)	119, 746
PciI	ACATGT	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	884
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	526
PkrI	GCNGC	4 cut(s)	55, 91, 151, 860
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	864
PscI	ACATGT	1 cut(s)	742
PshBI	ATTAAT	2 cut(s)	303, 324
Psp124BI	GAGCTC	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	783
PspPI	GGNCC	2 cut(s)	574, 864
PspPPI	RGGWCCY	1 cut(s)	864
PsuI	RGATCY	2 cut(s)	467, 811
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
RseI	CAYNNNNRTG	2 cut(s)	378, 402
SacI	GAGCTC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	884
SaqAI	TTAA	7 cut(s)	270, 282, 303, 324, 422, 519, 928
SatI	GCNGC	4 cut(s)	54, 90, 150, 859
Sau3AI	GATC	5 cut(s)	220, 370, 457, 467, 811
Sau96I	GGNCC	2 cut(s)	574, 864
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	785
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	2 cut(s)	235, 667
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	2 cut(s)	574, 864
SmiMI	CAYNNNNRTG	2 cut(s)	378, 402
Sse9I	AATT	5 cut(s)	8, 83, 300, 556, 565
SspMI	CTAG	2 cut(s)	666, 674
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	783
TaaI	ACNGT	4 cut(s)	189, 342, 453, 613
TaiI	ACGT	2 cut(s)	449, 760
TaqI	TCGA	1 cut(s)	205
TasI	AATT	5 cut(s)	8, 83, 300, 556, 565
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	7 cut(s)	270, 282, 303, 324, 422, 519, 928
Tru9I	TTAA	7 cut(s)	270, 282, 303, 324, 422, 519, 928
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	442, 447
TseI	GCWGC	4 cut(s)	53, 89, 149, 858
Tsp45I	GTSAC	2 cut(s)	442, 447
TspDTI	ATGAA	3 cut(s)	97, 425, 651
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	574, 864
VspI	ATTAAT	2 cut(s)	303, 324
XapI	RAATTY	1 cut(s)	8
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	2 cut(s)	119, 746
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	2 cut(s)	666, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.