Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

18388938 .. 18391442

Gene Structure 2505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGAACAGTCTATCACTCTCAGCCTCACGGCACTCAAAACCCCTCCTCCACCTTCTTAAACCCCAAACCCCAAAACCCAAATCCCCAGTCCTCATCCTCACCCACCACCTCTGCACCAATCTCAGCCCCAATCCGAACCAACCACCCCGAGACGACGACACCTTCATAACCCAAGTGCTCCAACTCCTCCAACCCAATGAGAAAGACTGGAACTTTGATCAACTTCACACCCTCCTCTTCTCCAACTCAACCTCTCCTTCATCTCACTCCGTCTTCCACATCACTCGCCGCCTCGGCTCTCCGTCCAAAGCGATCAAATTCTTCGATTACATCTCCGAAAATGTGGGAACAACCACCCCGCCAGGCTCCAATGGTTTGCTCTCCTCCGCATTCCAGGCCGTTCTGGAGCTCACATCGCAACAACCCACATCGGAAAAGAGGCTCATTGAGCTTTACGAGATGGCGAAGAAGCGGAATGTGGCGCTTGATGTGAACGCCGCAGCTCTGCTTGTTCGGTCCCTGGGAACTGCTGGCATGGAGGACGAGGCTGTCATGGTGTTTAATGAACTCGATTCGGGGTTGAAGAACACTCATATTCGCAATGTGGTGATTAGGTTGTTGATGAACATGGGGCGAGTTGATGATGCACTGAAGGTGCTCGACGAAATGCTTGACCCAGAAGCAAAGTTCCGGGCTGACGACTTTACCGGGGATATTGTGATTGGATCATTGTTGAGGAAAGAGCAGAAAGGGAGGAGAGTCAGTGTGGAGGAAATTGTGGACTTGGTGTCGAAATTTGGTAAGCATGGTGTGTTTCCTAATAGCCCGATACTTACGAAATTGGTGACTGTTTTGTGTAGGAATGGGAAGGTTAGTCGCGCTTGGGATGTGTTGCATGATGTTATGGAGATGGGTGGTGCTGTTGAAGCTGCTTCTTGCAATGCGCTTTTGACAGCTTTGGGAAGAGGTAATGATTTTAAGAGGATGAGTGAGCTTATGTTGAAGATGGAAGAGCTGGGCATTAAGCCGAATCTTATTACTTTTGGTATTCTTATTAATCGTTTATGTAAGTCTGGTAGACTAGATGCCGCCTTGGAGGTGTTTGAGAAGATGAGTGGAGGAGTAAAGGGGGTTTCAGCTAAACCGGATGTGATTATCTATAACACTTTGATTGATGGACTTTGTAAAGCAGGAAGGCCAGAAGAGGGATTGCGTTTGATGGGAAAGATGAAATCGCAAGATGGCTGTGCTCCCAATACTGTTACGTACAATTGTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAGGGGTCGTGAGCTCTTTGACAAAATGAAGGAGGAAGGGATGCCGCTAAATGTGGTCACCCTCAATACTTTGCTTGATGGTTTGTGCAGGCATGGGAGACTCAAGACTGCACTTGAGTTCTTCAAGGAGATGCAGAGGGATGGTCTGAAAGGCAATGCCATTACATACACTATCTTAATCACTTCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTGATCAGATGTTGAGCGCTGAATGTCCCACAGATGCAAAAGTTTATCACTGCTTGATCTCTGGTTTAAGCCTAGCCGGAAGGATGGAGGATGCCAGCTTTGTTGTCTCAAAGTTGAAGGAGGCTGGGTTCTCCATGGATAATGTTTCCTACAATGTAATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAAGCGTCTGGAGTGAAGCCTGATAGTGTGACATACAACACCTTGCTTGCCTACTTAAGCAAAGCTGGGGACTTCAAAAGTGCACATAAAGTACTTGACAGGATGAGGGATGAGGGTATTGTTCCCACTGTGGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGCGATATTGACAAAGCCATGAGAATCTTCAGAGACATGGGTTCTAAGTCAAAGATACCTCCGAATACTGTAATATACAATGATTTGATAAATTCTCTCTGTAAGAAGAATGATGTGGAACATGCTCTTTATTTGATGGATGATATGAAGGATAAGGGGGTGAGACCTAATACCCAAACGTTCAATGCCTTGTTCAAAGGCCTTAGAGAGAACAATTTAGTAGAAAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATAACGATGGAAATCCTTACCGAATGGCTTTCTTGTGTTGGTGAAATACAGAGGTTGAGAAAGTTTGTTCAAGGATATCCGGTTTCAAAGACAGAGGGCAAAGCGGCTGGTTTCAAAGCAACAGAGGGAAATGCCACCGGTTTCAAAGCAACAGAGGCAAAGCCCGCTGGTTTCAAAGCAACAGAAGGGAAACCCGCTGATTTCAAAGCGACAGAGGGCAAAGCCTCTGGTTTCAAAGCGACAGAAGGGAAACCCGCTGGTTTCAAAGCGACAGAAGGCAACGCTAACATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

834

Amino Acids

92.01

Weight (kDa)

8.02

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	297 - 353	1.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	311 - 357	1e-08	PPR repeat family
PPR_1	PF12854	340 - 372	4.7e-12	PPR repeat
PPR_3	PF13812	381 - 428	1.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	381 - 411	1.1e-10	PPR repeat
PPR_2	PF13041	382 - 431	1.6e-16	PPR repeat family
PPR	PF01535	386 - 412	1.3e-07	PPR repeat
PPR_1	PF12854	414 - 447	6.7e-10	PPR repeat
PPR_2	PF13041	418 - 467	9.2e-16	PPR repeat family
PPR	PF01535	421 - 450	1.2e-07	PPR repeat
PPR_1	PF12854	450 - 482	6.8e-12	PPR repeat
PPR_2	PF13041	454 - 502	2e-17	PPR repeat family
PPR	PF01535	456 - 486	1.5e-08	PPR repeat
PPR_1	PF12854	485 - 516	1.9e-09	PPR repeat
PPR_2	PF13041	489 - 535	9.4e-10	PPR repeat family
PPR	PF01535	491 - 520	9.9e-06	PPR repeat
PPR_2	PF13041	525 - 571	4.9e-07	PPR repeat family
TPR_24	PF23276	538 - 655	1.3e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	559 - 602	6e-13	PPR repeat family
PPR	PF01535	561 - 591	5.2e-06	PPR repeat
PPR_long	PF17177	573 - 656	5.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	583 - 638	3.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	590 - 622	1.2e-07	PPR repeat
PPR_2	PF13041	593 - 641	8.5e-15	PPR repeat family
PPR_1	PF12854	625 - 656	6e-11	PPR repeat
PPR_2	PF13041	628 - 665	3.9e-06	PPR repeat family
PPR_long	PF17177	646 - 751	9.5e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	661 - 744	9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	662 - 693	2.8e-08	PPR repeat
PPR_2	PF13041	664 - 711	8.5e-17	PPR repeat family
PPR	PF01535	667 - 697	3e-06	PPR repeat
Decapeptide	PF25296	769 - 826	2.5e-09	Decapeptide repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	1078
AccII	CGCG	1 cut(s)	879
AclI	AACGTT	1 cut(s)	2108
AclWI	GGATC	2 cut(s)	733, 2181
AcsI	RAATTY	3 cut(s)	317, 794, 2020
AcuI	CTGAAG	2 cut(s)	671, 1942
AfaI	GTAC	3 cut(s)	1268, 1851, 1903
AfeI	AGCGCT	1 cut(s)	1555
AfiI	CCNNNNNNNGG	1 cut(s)	1205
AflII	CTTAAG	1 cut(s)	1813
AgeI	ACCGGT	1 cut(s)	2345
AhdI	GACNNNNNGTC	1 cut(s)	787
AjnI	CCWGG	3 cut(s)	361, 393, 519
AloI	GAACNNNNNNTCC	2 cut(s)	1649, 1681
Alw21I	GWGCWC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
Alw26I	GTCTC	5 cut(s)	144, 1402, 1648, 1956, 2086
Alw44I	GTGCAC	1 cut(s)	1839
AlwI	GGATC	2 cut(s)	733, 2181
Ama87I	CYCGRG	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	1555
AoxI	GGCC	4 cut(s)	396, 1196, 2128, 2190
ApaLI	GTGCAC	1 cut(s)	1839
ApeKI	GCWGC	2 cut(s)	500, 929
ApoI	RAATTY	3 cut(s)	317, 794, 2020
ArsI	GACNNNNNNTTYG	4 cut(s)	72, 104, 197, 229
AseI	ATTAAT	2 cut(s)	1056, 1701
AsiGI	ACCGGT	1 cut(s)	2345
AspLEI	GCGC	4 cut(s)	484, 881, 946, 1556
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	2 cut(s)	692, 709
AsuHPI	GGTGA	6 cut(s)	91, 619, 856, 1360, 2101, 2261
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	1843
BanII	GRGCYC	2 cut(s)	411, 1326
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
BbvI	GCAGC	2 cut(s)	512, 916
BceAI	ACGGC	2 cut(s)	44, 383
BciT130I	CCWGG	3 cut(s)	363, 395, 521
BclI	TGATCA	2 cut(s)	217, 1540
BcnI	CCSGG	2 cut(s)	692, 709
BcoDI	GTCTC	5 cut(s)	144, 1402, 1648, 1956, 2086
BfaI	CTAG	2 cut(s)	1082, 1610
BfoI	RGCGCY	2 cut(s)	485, 1557
BfrI	CTTAAG	1 cut(s)	1813
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 1355, 2313
BlsI	GCNGC	7 cut(s)	290, 499, 502, 931, 1090, 1356, 2314
BmcAI	AGTACT	1 cut(s)	1851
Bme1390I	CCNGG	5 cut(s)	363, 395, 521, 692, 709
Bme18I	GGWCC	1 cut(s)	516
BmeRI	GACNNNNNGTC	1 cut(s)	787
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	367, 518
BmrFI	CCNGG	5 cut(s)	363, 395, 521, 692, 709
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	6 cut(s)	634, 1075, 1341, 1431, 1561, 1618
BmuI	ACTGGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	265
BpmI	CTGGAG	3 cut(s)	425, 1696, 1788
BpuEI	CTTGAG	2 cut(s)	1397, 1445
BpuMI	CCSGG	2 cut(s)	692, 709
BsaAI	YACGTR	1 cut(s)	1266
BsaBI	GATNNNNATC	1 cut(s)	2219
BsaI	GGTCTC	1 cut(s)	2086
BsaJI	CCNNGG	6 cut(s)	292, 519, 520, 708, 1092, 1671
BsaWI	WCCGGW	3 cut(s)	1144, 2287, 2345
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 748, 778, 1649, 1679
Bsc4I	CCNNNNNNNGG	1 cut(s)	1205
Bse118I	RCCGGY	1 cut(s)	2345
Bse1I	ACTGG	3 cut(s)	86, 212, 1713
Bse3DI	GCAATG	5 cut(s)	607, 946, 1471, 1533, 1918
Bse8I	GATNNNNATC	1 cut(s)	2219
BseBI	CCWGG	3 cut(s)	363, 395, 521
BseDI	CCNNGG	6 cut(s)	292, 519, 520, 708, 1092, 1671
BseJI	GATNNNNATC	1 cut(s)	2219
BseLI	CCNNNNNNNGG	1 cut(s)	1205
BseMI	GCAATG	5 cut(s)	607, 946, 1471, 1533, 1918
BseMII	CTCAG	2 cut(s)	33, 136
BseNI	ACTGG	3 cut(s)	86, 212, 1713
BseRI	GAGGAG	6 cut(s)	35, 176, 224, 373, 769, 1134
BseSI	GKGCMC	1 cut(s)	1843
BseXI	GCAGC	2 cut(s)	512, 916
BseYI	CCCAGC	3 cut(s)	1015, 1661, 1823
BsgI	GTGCAG	3 cut(s)	97, 1404, 1417
Bsh1236I	CGCG	1 cut(s)	879
BshFI	GGCC	4 cut(s)	398, 1198, 2130, 2192
BshTI	ACCGGT	1 cut(s)	2345
BsiHKAI	GWGCWC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	6 cut(s)	691, 708, 1145, 1614, 2288, 2346
BslFI	GGGAC	4 cut(s)	502, 1316, 1548, 1841
BslI	CCNNNNNNNGG	1 cut(s)	1205
BsmAI	GTCTC	5 cut(s)	144, 1402, 1648, 1956, 2086
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	4 cut(s)	502, 1316, 1548, 1841
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	4 cut(s)	398, 1198, 2130, 2192
Bso31I	GGTCTC	1 cut(s)	2086
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
Bsp143I	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
Bsp19I	CCATGG	1 cut(s)	1671
BspANI	GGCC	4 cut(s)	398, 1198, 2130, 2192
BspCNI	CTCAG	2 cut(s)	32, 135
BspFNI	CGCG	1 cut(s)	879
BspHI	TCATGA	1 cut(s)	1738
BspLI	GGNNCC	2 cut(s)	367, 518
BspPI	GGATC	2 cut(s)	733, 2181
BspQI	GCTCTTC	1 cut(s)	1005
BspTI	CTTAAG	1 cut(s)	1813
BspTNI	GGTCTC	1 cut(s)	2086
BsrDI	GCAATG	5 cut(s)	607, 946, 1471, 1533, 1918
BsrFI	RCCGGY	1 cut(s)	2345
BsrI	ACTGG	3 cut(s)	86, 212, 1713
BssAI	RCCGGY	1 cut(s)	2345
BssECI	CCNNGG	6 cut(s)	292, 519, 520, 708, 1092, 1671
BssMI	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
BssT1I	CCWWGG	2 cut(s)	1092, 1671
Bst2UI	CCWGG	3 cut(s)	363, 395, 521
Bst4CI	ACNGT	5 cut(s)	8, 850, 1261, 1888, 1999
Bst6I	CTCTTC	4 cut(s)	242, 958, 1005, 1197
BstAFI	CTTAAG	1 cut(s)	1813
BstBAI	YACGTR	1 cut(s)	1266
BstC8I	GCNNGC	5 cut(s)	532, 1400, 1633, 1806, 2373
BstDEI	CTNAG	4 cut(s)	19, 122, 1974, 2132
BstDSI	CCRYGG	1 cut(s)	1671
BstEII	GGTNACC	1 cut(s)	1366
BstFNI	CGCG	1 cut(s)	879
BstH2I	RGCGCY	2 cut(s)	485, 1557
BstHHI	GCGC	4 cut(s)	484, 881, 946, 1556
BstKTI	GATC	6 cut(s)	220, 315, 728, 1543, 1596, 2176
BstMAI	GTCTC	5 cut(s)	144, 1402, 1648, 1956, 2086
BstMBI	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
BstMWI	GCNNNNNNNGC	8 cut(s)	294, 395, 415, 448, 926, 1929, 2363, 2372
BstNI	CCWGG	3 cut(s)	363, 395, 521
BstNSI	RCATGY	1 cut(s)	2054
BstPI	GGTNACC	1 cut(s)	1366
BstSCI	CCNGG	5 cut(s)	361, 393, 519, 690, 707
BstSLI	GKGCMC	1 cut(s)	1843
BstSNI	TACGTA	1 cut(s)	1266
BstUI	CGCG	1 cut(s)	879
BstV1I	GCAGC	2 cut(s)	512, 916
BstV2I	GAAGAC	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	398, 1198, 2130, 2192
BtgI	CCRYGG	1 cut(s)	1671
BtgZI	GCGATG	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	1585
BtsIMutI	CAGTG	4 cut(s)	647, 769, 1585, 1884
Cac8I	GCNNGC	5 cut(s)	532, 1400, 1633, 1806, 2373
CciI	TCATGA	1 cut(s)	1738
CfoI	GCGC	4 cut(s)	484, 881, 946, 1556
Cfr10I	RCCGGY	1 cut(s)	2345
Cfr13I	GGNCC	1 cut(s)	516
CseI	GACGC	1 cut(s)	1752
Csp6I	GTAC	3 cut(s)	1267, 1850, 1902
CspAI	ACCGGT	1 cut(s)	2345
CviQI	GTAC	3 cut(s)	1267, 1850, 1902
DdeI	CTNAG	4 cut(s)	19, 122, 1974, 2132
DpnI	GATC	6 cut(s)	219, 314, 727, 1542, 1595, 2175
DpnII	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
DrdI	GACNNNNNNGTC	1 cut(s)	548
DriI	GACNNNNNGTC	1 cut(s)	787
DseDI	GACNNNNNNGTC	1 cut(s)	548
Eam1104I	CTCTTC	4 cut(s)	242, 958, 1005, 1197
Eam1105I	GACNNNNNGTC	1 cut(s)	787
EarI	CTCTTC	4 cut(s)	242, 958, 1005, 1197
Ecl136II	GAGCTC	2 cut(s)	409, 1324
Eco105I	TACGTA	1 cut(s)	1266
Eco130I	CCWWGG	2 cut(s)	1092, 1671
Eco147I	AGGCCT	2 cut(s)	2130, 2192
Eco24I	GRGCYC	2 cut(s)	411, 1326
Eco31I	GGTCTC	1 cut(s)	2086
Eco32I	GATATC	1 cut(s)	2285
Eco47I	GGWCC	1 cut(s)	516
Eco47III	AGCGCT	1 cut(s)	1555
Eco53kI	GAGCTC	2 cut(s)	409, 1324
Eco57I	CTGAAG	2 cut(s)	671, 1942
Eco88I	CYCGRG	1 cut(s)	147
Eco91I	GGTNACC	1 cut(s)	1366
EcoICRI	GAGCTC	2 cut(s)	409, 1324
EcoO65I	GGTNACC	1 cut(s)	1366
EcoRII	CCWGG	3 cut(s)	361, 393, 519
EcoRV	GATATC	1 cut(s)	2285
EcoT14I	CCWWGG	2 cut(s)	1092, 1671
EcoT38I	GRGCYC	2 cut(s)	411, 1326
ErhI	CCWWGG	2 cut(s)	1092, 1671
Esp3I	CGTCTC	1 cut(s)	144
FaqI	GGGAC	4 cut(s)	502, 1316, 1548, 1841
FauI	CCCGC	4 cut(s)	366, 2380, 2410, 2470
FbaI	TGATCA	2 cut(s)	217, 1540
FblI	GTMKAC	1 cut(s)	1078
Fnu4HI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 1355, 2313
FriOI	GRGCYC	2 cut(s)	411, 1326
Fsp4HI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 1355, 2313
FspBI	CTAG	2 cut(s)	1082, 1610
GlaI	GCGC	4 cut(s)	483, 880, 945, 1555
GluI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 1355, 2313
GsaI	CCCAGC	3 cut(s)	1019, 1665, 1827
GsuI	CTGGAG	3 cut(s)	425, 1696, 1788
HaeII	RGCGCY	2 cut(s)	485, 1557
HaeIII	GGCC	4 cut(s)	398, 1198, 2130, 2192
HapII	CCGG	6 cut(s)	691, 708, 1145, 1614, 2288, 2346
HgaI	GACGC	1 cut(s)	1752
HhaI	GCGC	4 cut(s)	484, 881, 946, 1556
Hin6I	GCGC	4 cut(s)	482, 879, 944, 1554
HinP1I	GCGC	4 cut(s)	482, 879, 944, 1554
HinfI	GANTC	7 cut(s)	572, 759, 1030, 1410, 1735, 1909, 1953
HpaII	CCGG	6 cut(s)	691, 708, 1145, 1614, 2288, 2346
HphI	GGTGA	6 cut(s)	91, 619, 856, 1360, 2101, 2261
Hpy166II	GTNNAC	5 cut(s)	493, 781, 1079, 1510, 1841
Hpy188I	TCNGA	7 cut(s)	135, 337, 433, 1458, 1545, 1961, 1992
Hpy188III	TCNNGA	6 cut(s)	404, 1319, 1414, 1739, 1767, 2201
Hpy8I	GTNNAC	5 cut(s)	493, 781, 1079, 1510, 1841
Hpy99I	CGWCG	2 cut(s)	158, 665
HpyCH4III	ACNGT	5 cut(s)	8, 850, 1261, 1888, 1999
HpyCH4IV	ACGT	2 cut(s)	1265, 2108
HpyF10VI	GCNNNNNNNGC	8 cut(s)	294, 395, 415, 448, 926, 1929, 2363, 2372
HpyF3I	CTNAG	4 cut(s)	19, 122, 1974, 2132
HpySE526I	ACGT	2 cut(s)	1265, 2108
HspAI	GCGC	4 cut(s)	482, 879, 944, 1554
Ksp22I	TGATCA	2 cut(s)	217, 1540
Kzo9I	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
LguI	GCTCTTC	1 cut(s)	1005
LmnI	GCTCC	4 cut(s)	183, 371, 406, 1255
Lsp1109I	GCAGC	2 cut(s)	512, 916
LweI	GCATC	6 cut(s)	634, 1075, 1341, 1431, 1561, 1618
MaeI	CTAG	2 cut(s)	1082, 1610
MaeII	ACGT	2 cut(s)	1265, 2108
MaeIII	GTNAC	5 cut(s)	844, 1261, 1366, 1786, 1891
MalI	GATC	6 cut(s)	219, 314, 727, 1542, 1595, 2175
MboI	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
MfeI	CAATTG	1 cut(s)	1270
MhlI	GDGCHC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
MluCI	AATT	8 cut(s)	317, 774, 794, 839, 1270, 2020, 2143, 2165
MlyI	GAGTC	2 cut(s)	768, 1404
MmeI	TCCRAC	3 cut(s)	205, 214, 267
MspA1I	CMGCKG	3 cut(s)	2375, 2405, 2465
MspCI	CTTAAG	1 cut(s)	1813
MspI	CCGG	6 cut(s)	691, 708, 1145, 1614, 2288, 2346
MspR9I	CCNGG	5 cut(s)	363, 395, 521, 692, 709
MunI	CAATTG	1 cut(s)	1270
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	3 cut(s)	363, 395, 521
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	8 cut(s)	294, 395, 415, 448, 926, 1929, 2363, 2372
NciI	CCSGG	2 cut(s)	692, 709
NcoI	CCATGG	1 cut(s)	1671
NdeII	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
NlaIV	GGNNCC	2 cut(s)	367, 518
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	4 cut(s)	844, 1366, 1786, 1891
NspI	RCATGY	1 cut(s)	2054
PagI	TCATGA	1 cut(s)	1738
PasI	CCCWGGG	1 cut(s)	520
PceI	AGGCCT	2 cut(s)	2130, 2192
PciSI	GCTCTTC	1 cut(s)	1005
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	5 cut(s)	572, 1030, 1735, 1909, 1953
PinAI	ACCGGT	1 cut(s)	2345
PkrI	GCNGC	7 cut(s)	290, 499, 502, 931, 1090, 1356, 2314
PleI	GAGTC	2 cut(s)	767, 1404
PpsI	GAGTC	2 cut(s)	767, 1404
Ppu21I	YACGTR	1 cut(s)	1266
PshBI	ATTAAT	2 cut(s)	1056, 1701
Psp124BI	GAGCTC	2 cut(s)	411, 1326
Psp1406I	AACGTT	1 cut(s)	2108
Psp6I	CCWGG	3 cut(s)	361, 393, 519
PspEI	GGTNACC	1 cut(s)	1366
PspFI	CCCAGC	3 cut(s)	1015, 1661, 1823
PspGI	CCWGG	3 cut(s)	361, 393, 519
PspN4I	GGNNCC	2 cut(s)	367, 518
PspPI	GGNCC	1 cut(s)	516
RsaI	GTAC	3 cut(s)	1268, 1851, 1903
RsaNI	GTAC	3 cut(s)	1267, 1850, 1902
SacI	GAGCTC	2 cut(s)	411, 1326
SapI	GCTCTTC	1 cut(s)	1005
SatI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 1355, 2313
Sau3AI	GATC	6 cut(s)	217, 312, 725, 1540, 1593, 2173
Sau96I	GGNCC	1 cut(s)	516
ScaI	AGTACT	1 cut(s)	1851
SchI	GAGTC	2 cut(s)	768, 1404
ScrFI	CCNGG	5 cut(s)	363, 395, 521, 692, 709
SduI	GDGCHC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
SfaNI	GCATC	6 cut(s)	634, 1075, 1341, 1431, 1561, 1618
SinI	GGWCC	1 cut(s)	516
SmlI	CTYRAG	3 cut(s)	1412, 1424, 1813
SmoI	CTYRAG	3 cut(s)	1412, 1424, 1813
SnaBI	TACGTA	1 cut(s)	1266
Sse9I	AATT	8 cut(s)	317, 774, 794, 839, 1270, 2020, 2143, 2165
SseBI	AGGCCT	2 cut(s)	2130, 2192
SspI	AATATT	1 cut(s)	1516
SspMI	CTAG	2 cut(s)	1082, 1610
SstI	GAGCTC	2 cut(s)	411, 1326
StuI	AGGCCT	2 cut(s)	2130, 2192
StyD4I	CCNGG	5 cut(s)	361, 393, 519, 690, 707
StyI	CCWWGG	2 cut(s)	1092, 1671
TaaI	ACNGT	5 cut(s)	8, 850, 1261, 1888, 1999
TaiI	ACGT	2 cut(s)	1268, 2111
TaqI	TCGA	5 cut(s)	324, 570, 660, 791, 2176
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	8 cut(s)	317, 774, 794, 839, 1270, 2020, 2143, 2165
TatI	WGTACW	1 cut(s)	1849
TauI	GCSGC	5 cut(s)	291, 500, 1091, 1357, 2315
TfiI	GAWTC	5 cut(s)	572, 1030, 1735, 1909, 1953
TscAI	CASTG	4 cut(s)	654, 769, 1592, 1891
TseFI	GTSAC	4 cut(s)	844, 1366, 1786, 1891
TseI	GCWGC	2 cut(s)	500, 929
Tsp45I	GTSAC	4 cut(s)	844, 1366, 1786, 1891
TspGWI	ACGGA	2 cut(s)	259, 291
TspRI	CASTG	4 cut(s)	654, 769, 1592, 1891
Vha464I	CTTAAG	1 cut(s)	1813
VneI	GTGCAC	1 cut(s)	1839
VpaK11BI	GGWCC	1 cut(s)	516
VspI	ATTAAT	2 cut(s)	1056, 1701
XapI	RAATTY	3 cut(s)	317, 794, 2020
XceI	RCATGY	1 cut(s)	2054
XmiI	GTMKAC	1 cut(s)	1078
XspI	CTAG	2 cut(s)	1082, 1610
ZrmI	AGTACT	1 cut(s)	1851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.