Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001626.1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

87255 .. 87842

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001626.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggccgcaacccctccaggatccaaggctctgctctcttccacatcccaggcccttctggagctcacattacgggagcccacctcggaaaagaagctctttaagctttacaagatggccaaggaccgaaatgtcccactgaatctcaaggccgcaggtctacttgttaggtccatgggcgcggctgggatggaggacgagcctttcacaatgtttaacgagcttcatttggggttgaaaactactcatattcgcaatgtggtgattgggttgtttctgaagattgggcgagtaaatgatctgaaggtgctcgacgaaatgcttcacccagaagcgaagtttcgggttgatgactttaccggcgatgttgtgatcggctcattattgaggagagagcagatagggaggagtggcagtgaggaagaaattgtggagttggtgtcgaaatttggtaagcatggtgtgtttcctaataacacaatacttacaaaattggtcactgttttgtgtaggaataggacggttggtattgcttgggatgttttacatgatgtcatgaagatgggtggtgctgtagaagctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

195

Amino Acids

21.45

Weight (kDa)

9.01

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	182
AciI	CCGC	3 cut(s)	6, 153, 182
AclWI	GGATC	2 cut(s)	15, 28
AcoI	YGGCCR	2 cut(s)	3, 117
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	2 cut(s)	299, 323
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	16, 48
AluBI	AGCT	5 cut(s)	64, 97, 106, 223, 581
AluI	AGCT	5 cut(s)	64, 97, 106, 223, 581
Alw21I	GWGCWC	2 cut(s)	66, 312
AlwI	GGATC	2 cut(s)	15, 28
AoxI	GGCC	4 cut(s)	3, 51, 117, 150
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	52, 124, 171
AsuHPI	GGTGA	2 cut(s)	274, 317
AvaII	GGWCC	2 cut(s)	124, 171
BalI	TGGCCA	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	66, 81
Bbv12I	GWGCWC	2 cut(s)	66, 312
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	3 cut(s)	109, 184, 556
BciT130I	CCWGG	2 cut(s)	18, 50
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	6, 153, 183, 582
BlsI	GCNGC	4 cut(s)	7, 154, 184, 583
Bme1390I	CCNGG	2 cut(s)	18, 50
Bme18I	GGWCC	2 cut(s)	124, 171
BmgT120I	GGNCC	3 cut(s)	52, 124, 171
BmiI	GGNNCC	2 cut(s)	22, 78
BmrFI	CCNGG	2 cut(s)	18, 50
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	5 cut(s)	24, 48, 84, 120, 174
BsaXI	ACNNNNNCTCC	4 cut(s)	400, 425, 430, 455
Bse118I	RCCGGY	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	18, 50
BseDI	CCNNGG	5 cut(s)	24, 48, 84, 120, 174
BseGI	GGATG	3 cut(s)	44, 195, 544
BseMI	GCAATG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	403, 421
BseXI	GCAGC	1 cut(s)	568
BseYI	CCCAGC	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	4 cut(s)	5, 53, 119, 152
BsiHKAI	GWGCWC	2 cut(s)	66, 312
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	4 cut(s)	5, 53, 119, 152
Bsp1286I	GDGCHC	3 cut(s)	66, 81, 312
Bsp143I	GATC	3 cut(s)	20, 298, 372
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	3 cut(s)	6, 153, 182
BspANI	GGCC	4 cut(s)	5, 53, 119, 152
BspFNI	CGCG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	22, 78
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	15, 28
BsrDI	GCAATG	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	5 cut(s)	24, 48, 84, 120, 174
BssMI	GATC	3 cut(s)	20, 298, 372
BssT1I	CCWWGG	3 cut(s)	24, 120, 174
Bst2UI	CCWGG	2 cut(s)	18, 50
Bst4CI	ACNGT	2 cut(s)	502, 523
Bst6I	CTCTTC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	585
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	44, 195, 544
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	23, 301, 375
BstMBI	GATC	3 cut(s)	20, 298, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 578
BstNI	CCWGG	2 cut(s)	18, 50
BstSCI	CCNGG	2 cut(s)	16, 48
BstSFI	CTRYAG	1 cut(s)	573
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	4 cut(s)	5, 53, 119, 152
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	44, 195, 544
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	3 cut(s)	137, 421, 498
BveI	ACCTGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	52, 124, 171
CviAII	CATG	4 cut(s)	175, 458, 548, 556
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	3 cut(s)	22, 300, 374
DpnII	GATC	3 cut(s)	20, 298, 372
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	2 cut(s)	3, 117
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	24, 120, 174
Eco24I	GRGCYC	2 cut(s)	66, 81
Eco47I	GGWCC	2 cut(s)	124, 171
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	299, 323
EcoICRI	GAGCTC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	16, 48
EcoT14I	CCWWGG	3 cut(s)	24, 120, 174
EcoT38I	GRGCYC	2 cut(s)	66, 81
ErhI	CCWWGG	3 cut(s)	24, 120, 174
FaeI	CATG	4 cut(s)	178, 461, 551, 559
FaiI	YATR	5 cut(s)	176, 249, 459, 549, 557
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	174, 457, 547, 555
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	4 cut(s)	6, 153, 183, 582
FokI	GGATG	3 cut(s)	31, 202, 551
FriOI	GRGCYC	2 cut(s)	66, 81
Fsp4HI	GCNGC	4 cut(s)	6, 153, 183, 582
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	4 cut(s)	6, 153, 183, 582
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	5, 53, 119, 152
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	4 cut(s)	178, 461, 551, 559
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	2 cut(s)	274, 317
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	88, 279, 303
Hpy188III	TCNNGA	2 cut(s)	59, 556
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	65, 298
HpyCH4III	ACNGT	2 cut(s)	502, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 578
HpyF3I	CTNAG	1 cut(s)	585
Hsp92II	CATG	4 cut(s)	178, 461, 551, 559
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	20, 298, 372
LmnI	GCTCC	2 cut(s)	61, 76
LpnPI	CCDG	9 cut(s)	3, 30, 35, 44, 62, 141, 171, 342, 373
Lsp1109I	GCAGC	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	3 cut(s)	22, 300, 374
MboI	GATC	3 cut(s)	20, 298, 372
MboII	GAAGA	4 cut(s)	30, 292, 434, 571
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	3 cut(s)	66, 81, 312
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	3 cut(s)	426, 446, 491
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	6 cut(s)	24, 94, 187, 381, 399, 412
Mox20I	TGGCCA	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	2 cut(s)	102, 216
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	18, 50
MvaI	CCWGG	2 cut(s)	18, 50
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	103, 578
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	20, 298, 372
NlaIII	CATG	4 cut(s)	178, 461, 551, 559
NlaIV	GGNNCC	2 cut(s)	22, 78
NmuCI	GTSAC	1 cut(s)	496
PagI	TCATGA	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	7, 154, 184, 583
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	16, 48
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	16, 48
PspN4I	GGNNCC	2 cut(s)	22, 78
PspPI	GGNCC	3 cut(s)	52, 124, 171
PsuI	RGATCY	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	102, 216
SatI	GCNGC	4 cut(s)	6, 153, 183, 582
Sau3AI	GATC	3 cut(s)	20, 298, 372
Sau96I	GGNCC	3 cut(s)	52, 124, 171
ScrFI	CCNGG	2 cut(s)	18, 50
SduI	GDGCHC	3 cut(s)	66, 81, 312
SetI	ASST	9 cut(s)	66, 86, 99, 108, 160, 173, 225, 309, 583
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	2 cut(s)	124, 171
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	426, 446, 491
SsiI	CCGC	3 cut(s)	6, 153, 182
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	16, 48
StyI	CCWWGG	3 cut(s)	24, 120, 174
TaaI	ACNGT	2 cut(s)	502, 523
TaqI	TCGA	2 cut(s)	312, 443
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	3 cut(s)	426, 446, 491
TauI	GCSGC	3 cut(s)	8, 155, 185
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	102, 216
Tru9I	TTAA	2 cut(s)	102, 216
TscAI	CASTG	3 cut(s)	144, 421, 505
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	215, 572
TspRI	CASTG	3 cut(s)	144, 421, 505
VpaK11BI	GGWCC	2 cut(s)	124, 171
XapI	RAATTY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.