Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

14507753 .. 14508916

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGAAGCGAACCAACCACCTCTGTACCAATCCCAATTCCGATCCGAACCAACCACCCCAAGATGACGATTCCCTCATAACCCAAGTCCTCCGACCCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCTTCTTTTCGCTCCCTTTTCCTCATCACTCGCCGCCTCGACGCTCCCTCCAAAGCCCTCAAATTCTTCGATTACGTCACCGAAAACGTGGCCGAAACCCCTCCAGGATCCAAGGCTCTGCTCTCCTCCGCATTCCAGGCCCTTCTGGAGCTCACATTGCGGGAGCCCACCTCGGAAAAGAAGCTCTTTGAGCTTTACAAGATAGCCAAGGACCGGAATGTCCCGCTGAATCTCAAGGCCGCAGGTCTGCTTGTTCGGTCCATGGGCGCGGCTGGGATGGAGGACGAGGCTCTCACAGTGTTTAACGAGCTTCATTTGGGGTTGAAAACTTCTCATATTCGCAATGTGGTGATTGAGTTGTTGCTGAAGATTGGGCGAGTAGATGGTGCACTGAAGGTGCTCGACGAAATGCTTCACCCAGAAGCGAAGTTTCCGGTTGATGACTTTACCGGTGATGTTGTGATCGGCTCATTATTGAGGAGAGAGCAGATAGGGAGGAGTGTCAGTGAGGAAGAAATTGTGGAGTTGGTGTCGAAATTTGAAGCTGCTTCGTGCAATGCGCTTTTGACAGCTTTGGGAAGAGCTAATGATTTTAAGAGGATGAGTGAGCTTATGGCGAAGATGGAAGAGATGGGCATTAAGCCCGATGTTATAACTTTTGGTATTCTTATTAATCGGTTAGGCAAGTCTAGGAGAATAGATGCTGCCTTGGAGGTGTTTGAAAAGATGAGTGGAGGGGTAAAGGGGGTTTCAGTTGAACCAGATGTGATCGTCTATAACACTCTGATTGATGGACTTTGCAAAGTGGGAAGGCAGGAAGAAGGATTGCGTTTATGGATTCCGATCTGCCTTTTTGTGATAGAAAGGAGAGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

345

Amino Acids

38.56

Weight (kDa)

5.61

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	232 - 282	6.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	236 - 281	7.8e-10	PPR repeat family
PPR_1	PF12854	264 - 297	3.7e-09	PPR repeat
PPR_1	PF12854	305 - 331	3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	812
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	392
AccII	CGCG	1 cut(s)	428
AciI	CCGC	6 cut(s)	193, 288, 319, 383, 399, 428
AclWI	GGATC	3 cut(s)	38, 261, 274
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	221, 695
AcuI	CTGAAG	2 cut(s)	545, 572
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	4 cut(s)	484, 701, 881, 917
AjnI	CCWGG	2 cut(s)	262, 294
AluBI	AGCT	8 cut(s)	310, 343, 352, 469, 704, 731, 743, 769
AluI	AGCT	8 cut(s)	310, 343, 352, 469, 704, 731, 743, 769
Alw21I	GWGCWC	3 cut(s)	312, 550, 561
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	3 cut(s)	38, 261, 274
AoxI	GGCC	3 cut(s)	249, 297, 396
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	704, 863
ApoI	RAATTY	2 cut(s)	221, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AseI	ATTAAT	1 cut(s)	831
AsiGI	ACCGGT	1 cut(s)	608
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	428, 721
AspS9I	GGNCC	3 cut(s)	298, 370, 417
AsuHPI	GGTGA	4 cut(s)	229, 520, 566, 623
AvaII	GGWCC	2 cut(s)	370, 417
BaeGI	GKGCMC	1 cut(s)	550
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BamHI	GGATCC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	312, 327
Bbv12I	GWGCWC	3 cut(s)	312, 550, 561
BbvI	GCAGC	2 cut(s)	691, 850
BccI	CCATC	5 cut(s)	430, 536, 775, 784, 944
BciT130I	CCWGG	2 cut(s)	264, 296
BfaI	CTAG	1 cut(s)	849
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	5 cut(s)	193, 399, 429, 705, 864
BlsI	GCNGC	5 cut(s)	194, 400, 430, 706, 865
Bme1390I	CCNGG	2 cut(s)	264, 296
Bme18I	GGWCC	2 cut(s)	370, 417
BmgT120I	GGNCC	3 cut(s)	298, 370, 417
BmiI	GGNNCC	2 cut(s)	268, 324
BmrFI	CCNGG	2 cut(s)	264, 296
BmsI	GCATC	1 cut(s)	850
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	2 cut(s)	246, 326
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	1001
BsaJI	CCNNGG	5 cut(s)	270, 330, 366, 420, 867
BsaWI	WCCGGW	3 cut(s)	372, 592, 608
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 221, 649, 674, 679, 704
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	3 cut(s)	314, 508, 721
Bse8I	GATNNNNATC	1 cut(s)	1001
BseBI	CCWGG	2 cut(s)	264, 296
BseDI	CCNNGG	5 cut(s)	270, 330, 366, 420, 867
BseGI	GGATG	2 cut(s)	441, 765
BseJI	GATNNNNATC	1 cut(s)	1001
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	3 cut(s)	314, 508, 721
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	4 cut(s)	128, 274, 652, 670
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	691, 850
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	3 cut(s)	251, 299, 398
BshTI	ACCGGT	1 cut(s)	608
BsiHKAI	GWGCWC	3 cut(s)	312, 550, 561
BsiSI	CCGG	3 cut(s)	373, 593, 609
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	3 cut(s)	251, 299, 398
Bsp1286I	GDGCHC	4 cut(s)	312, 327, 550, 561
Bsp143I	GATC	5 cut(s)	43, 266, 621, 927, 1002
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	6 cut(s)	193, 288, 319, 383, 399, 428
BspANI	GGCC	3 cut(s)	251, 299, 398
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	2 cut(s)	268, 324
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	3 cut(s)	38, 261, 274
BspQI	GCTCTTC	1 cut(s)	733
BsrDI	GCAATG	3 cut(s)	314, 508, 721
BsrFI	RCCGGY	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	5 cut(s)	270, 330, 366, 420, 867
BssMI	GATC	5 cut(s)	43, 266, 621, 927, 1002
BssT1I	CCWWGG	4 cut(s)	270, 366, 420, 867
Bst2UI	CCWGG	2 cut(s)	264, 296
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	3 cut(s)	146, 733, 780
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	441, 765
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	2 cut(s)	428, 721
BstKTI	GATC	5 cut(s)	46, 269, 624, 930, 1005
BstMBI	GATC	5 cut(s)	43, 266, 621, 927, 1002
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 316, 349
BstNI	CCWGG	2 cut(s)	264, 296
BstSCI	CCNGG	2 cut(s)	262, 294
BstSLI	GKGCMC	1 cut(s)	550
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	691, 850
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	251, 299, 398
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	441, 765
BtsIMutI	CAGTG	3 cut(s)	462, 548, 670
BveI	ACCTGC	1 cut(s)	392
CfoI	GCGC	2 cut(s)	428, 721
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	298, 370, 417
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	27
CspAI	ACCGGT	1 cut(s)	608
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	5 cut(s)	45, 268, 623, 929, 1004
DpnII	GATC	5 cut(s)	43, 266, 621, 927, 1002
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	3 cut(s)	146, 733, 780
EarI	CTCTTC	3 cut(s)	146, 733, 780
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	4 cut(s)	270, 366, 420, 867
Eco24I	GRGCYC	2 cut(s)	312, 327
Eco47I	GGWCC	2 cut(s)	370, 417
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	545, 572
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	262, 294
EcoT14I	CCWWGG	4 cut(s)	270, 366, 420, 867
EcoT38I	GRGCYC	2 cut(s)	312, 327
ErhI	CCWWGG	4 cut(s)	270, 366, 420, 867
FaeI	CATG	1 cut(s)	424
FaiI	YATR	7 cut(s)	80, 422, 495, 773, 812, 936, 994
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	1 cut(s)	420
FauI	CCCGC	2 cut(s)	312, 390
Fnu4HI	GCNGC	5 cut(s)	193, 399, 429, 705, 864
FokI	GGATG	2 cut(s)	448, 772
FriOI	GRGCYC	2 cut(s)	312, 327
Fsp4HI	GCNGC	5 cut(s)	193, 399, 429, 705, 864
FspBI	CTAG	1 cut(s)	849
GlaI	GCGC	2 cut(s)	427, 720
GluI	GCNGC	5 cut(s)	193, 399, 429, 705, 864
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	2 cut(s)	246, 326
HaeIII	GGCC	3 cut(s)	251, 299, 398
HapII	CCGG	3 cut(s)	373, 593, 609
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	428, 721
Hin1II	CATG	1 cut(s)	424
Hin6I	GCGC	2 cut(s)	426, 719
HinP1I	GCGC	2 cut(s)	426, 719
HinfI	GANTC	3 cut(s)	71, 388, 997
HpaII	CCGG	3 cut(s)	373, 593, 609
HphI	GGTGA	4 cut(s)	229, 520, 566, 623
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	6 cut(s)	43, 48, 95, 334, 945, 1002
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	2 cut(s)	203, 566
HpyAV	CCTTC	5 cut(s)	171, 311, 547, 963, 974
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	2 cut(s)	234, 246
HpyCH4V	TGCA	3 cut(s)	548, 714, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 316, 349
HpySE526I	ACGT	2 cut(s)	234, 246
Hsp92II	CATG	1 cut(s)	424
HspAI	GCGC	2 cut(s)	426, 719
Kzo9I	GATC	5 cut(s)	43, 266, 621, 927, 1002
LguI	GCTCTTC	1 cut(s)	733
LmnI	GCTCC	4 cut(s)	176, 208, 307, 322
Lsp1109I	GCAGC	2 cut(s)	691, 850
LweI	GCATC	1 cut(s)	850
MaeI	CTAG	1 cut(s)	849
MaeII	ACGT	2 cut(s)	234, 246
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	5 cut(s)	45, 268, 623, 929, 1004
MboI	GATC	5 cut(s)	43, 266, 621, 927, 1002
MboII	GAAGA	8 cut(s)	133, 217, 538, 683, 750, 790, 797, 989
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	4 cut(s)	312, 327, 550, 561
MluCI	AATT	4 cut(s)	37, 221, 675, 695
MmeI	TCCRAC	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	4 cut(s)	462, 753, 798, 831
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	3 cut(s)	373, 593, 609
MspR9I	CCNGG	2 cut(s)	264, 296
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	264, 296
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	296, 316, 349
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	5 cut(s)	43, 266, 621, 927, 1002
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	2 cut(s)	268, 324
NmuCI	GTSAC	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	733
PctI	GAATGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	71, 388, 997
PfoI	TCCNGGA	1 cut(s)	262
PinAI	ACCGGT	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	194, 400, 430, 706, 865
PshBI	ATTAAT	1 cut(s)	831
PsiI	TTATAA	1 cut(s)	812
Psp124BI	GAGCTC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	262, 294
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	2 cut(s)	262, 294
PspN4I	GGNNCC	2 cut(s)	268, 324
PspPI	GGNCC	3 cut(s)	298, 370, 417
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	733
SaqAI	TTAA	4 cut(s)	462, 753, 798, 831
SatI	GCNGC	5 cut(s)	193, 399, 429, 705, 864
Sau3AI	GATC	5 cut(s)	43, 266, 621, 927, 1002
Sau96I	GGNCC	3 cut(s)	298, 370, 417
ScrFI	CCNGG	2 cut(s)	264, 296
SduI	GDGCHC	4 cut(s)	312, 327, 550, 561
SfaNI	GCATC	1 cut(s)	850
SinI	GGWCC	2 cut(s)	370, 417
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	4 cut(s)	37, 221, 675, 695
SsiI	CCGC	6 cut(s)	193, 288, 319, 383, 399, 428
SspMI	CTAG	1 cut(s)	849
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	262, 294
StyI	CCWWGG	4 cut(s)	270, 366, 420, 867
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	2 cut(s)	237, 249
TaqI	TCGA	4 cut(s)	198, 228, 561, 692
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	4 cut(s)	37, 221, 675, 695
TauI	GCSGC	3 cut(s)	195, 401, 431
TfiI	GAWTC	3 cut(s)	71, 388, 997
Tru1I	TTAA	4 cut(s)	462, 753, 798, 831
Tru9I	TTAA	4 cut(s)	462, 753, 798, 831
TscAI	CASTG	3 cut(s)	462, 555, 670
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	704, 863
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	461
TspRI	CASTG	3 cut(s)	462, 555, 670
VneI	GTGCAC	1 cut(s)	546
VpaK11BI	GGWCC	2 cut(s)	370, 417
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	2 cut(s)	221, 695
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.