Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

16428768 .. 16433376

Gene Structure 4609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGATTGGGCAAGCGGCAGGTGAATGCGGGAGCGGAGGCAGCTTGGGCGGCTTTGGAGTCTTTCACTCTCAGCCTCAAGCCACTCAAAACCTCTCCTCCGCCTTCTTAAACCCCAAACCCCCCAAATCCAAATCCCCCGTCTTCCTCCACCTGAGCCGCCACCTCTGCACAAATCCCAATTGCAATCCCAACCAACCACCCCAAGACGACGATTCCCTCGTAACCCAAGTCCTCCAACTCCTCCGACCCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCTTCTCCTTCTCCTCGCTCCCTTTTCCTCATCACTCGCCGCCTCGGCGCTCCCTCCAAAGCCCTCAAATTCTTCGATTACGTCTCCGAAAACGTGGCCGGAACCCCTCCAGGATCCAAGGCTCTGCTCTCCTCCGCATTCCAGGCCCTTCTGGAGCTCACATTGCGAGAGCCCACCTCGGAAAACAAGCTCTTTGAGCTTTACAAGATGGCCAAGGACCGGAATGTCCCGCTGAATCTCAAGGCCGCAGGTCTGCTTGTTCGGTCCATGGGCGCGGCTGGGATGGAGGACGAGGCTCTCACAGTGTTTAACGAGCTTCATTTGGGGTTGAAAACTACTCATATTCGCAATGTGGTGATTGGGATGTTGCTGAAGATTGGGCGAGTGGATGATGCACTGAAGGTGCTCGACGAAATGCTTCACCCAGAAGCGAAGTTTCGGGTTGATGATTTTACCGGCGATGTTGTGATTGGCTCATTACTGAAGAGAGAGCAGATAGGGAGGAGTGTCAGTGAGGAAGAAATTGTGGAGTTGGTGTCGAGATTTGGTGAGCATGGTGTGTTTCCTAATAGCACAATACTTACGAAATTGGTCACTGTTTTGTGTAGGAATAGGAAGGTTGGTATTGCTTGGGATGTTTTACATGATGTCATGAAGATGGGTAGTGCTGTAGAAGCTGCTCCGTGCAATGCGCTTTTGACAGCTTTGGGAAGAGGTAATGATTTTAAGAGGATGAGTGAGTTTATGGCGAAGATGGAAGAGATGGGCATTAAGCCCGATGTTATAACTTTTGGTATTCTTATTAATCGGTTATGCAAGTCTAGGAGAATAGATGCTGCCTTGGAGGTGTTTGAAAAGATGAGTGGAGGACTAAAGGGGGTTTCGGCTGAACCAGATGTGATCATCTATAACACTCTGATTGATGGACTTTGTAAAGTGGGAAGGCAGGAAGAAGGATTGCGTTTGATGGAAAGGATGAGATCGCAAGGTGGCTGTGCTCCTAATACTGTTACCTACAATTGTTTGATTGATGGCTTCAACAAAGTTGGGGACATTGAGAGGGGCCGTGAGCTCTTTGATAAAATGAAGGAGGAAGGGATACCACTAAATGTGGCCACCCTTAATACTTTGCTTGATGGTCTGTGCAGGCATGGGAGACTCAACACTGCACTTGAGTTCTTCAACGAAATGCAGAGGGATGGTCTGAAAGGCAATGCTGTCACTTACACAATCTTAATCACTTCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTAATCAGATGTTGAGCGCTGAATGTCCCACAGATGCAATAGTTTACCACTGCTTGATCTCTGGTTTAAGCCAAGCTGGAAAGATGGAGGATGCCAGCTTTGTTGTTTCGAAGTTGAAGGAGGCTGGTTTCTCTATGGATATCGTTTCCTACAATGTTATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAGGCGTCTGGAGTGAAGCCTGATAGCGTAACATACAACACCTTGCTTGCCTACTTAAGCAAAGCTGGGGACTTCAAAAGTGCACATAAAGTACTTGACAGGATGATGGATGACGGTATTGTTCCCACTGTTGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGTGATATCGACAAAGCCATGAGAATCTTCAGAGACATGGGTTCTAAGTCAAAGATACCTCCGAATACTGTAATATACAGTGATTTAATAAATTCTCTCTGCAAGAAGAATGATGTGGAACAAGCTCTTTATTTGATGGAGGATATGAAGGAGAAAGGGGTGAGACCTAATACCCAAACGTTCAATGCCCTGTTCAAAGGCCTTAGAGAGAACAATTTATTAAAGAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATAACGATGGAGATTCTTACTGAATGGCTTTCTGGTGTTGGTGAAATAGAGAGGTTGAGAAAGTTTGTTCAAGGATATCCGGTTTCAAAGCCTCAGCCCAAACAGAAGGATGGGATAGTCGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

797

Amino Acids

88.24

Weight (kDa)

6.6

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	316 - 372	2.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	332 - 376	5e-09	PPR repeat family
PPR_1	PF12854	358 - 391	2.7e-11	PPR repeat
PPR_3	PF13812	400 - 447	3.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	400 - 430	1.2e-09	PPR repeat
PPR_2	PF13041	401 - 450	3.8e-15	PPR repeat family
PPR_1	PF12854	434 - 466	1.1e-09	PPR repeat
TPR_24	PF23276	435 - 534	6.4e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	437 - 486	7.3e-16	PPR repeat family
PPR	PF01535	440 - 470	5.7e-08	PPR repeat
PPR_1	PF12854	469 - 501	2.9e-11	PPR repeat
PPR_2	PF13041	473 - 521	2.5e-17	PPR repeat family
PPR	PF01535	476 - 505	1.1e-07	PPR repeat
PPR_long	PF17177	481 - 641	5.9e-11	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	486 - 591	1.2e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	504 - 535	1.5e-09	PPR repeat
PPR_2	PF13041	508 - 555	5.5e-11	PPR repeat family
PPR	PF01535	510 - 539	5.2e-06	PPR repeat
PPR_2	PF13041	543 - 590	9.9e-09	PPR repeat family
TPR_24	PF23276	557 - 674	3e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	578 - 621	1.1e-13	PPR repeat family
PPR	PF01535	580 - 610	4.9e-06	PPR repeat
PPR_long	PF17177	593 - 675	1.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	602 - 658	2.1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	609 - 640	1.8e-07	PPR repeat
PPR_2	PF13041	612 - 660	3.8e-14	PPR repeat family
PPR_1	PF12854	643 - 675	5.1e-11	PPR repeat
PPR_2	PF13041	647 - 686	6e-07	PPR repeat family
PPR_long	PF17177	666 - 773	4.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	670 - 728	5.3e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	679 - 754	5.2e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	681 - 712	1.5e-07	PPR repeat
PPR_2	PF13041	683 - 730	1.2e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1094
AarI	CACCTGC	1 cut(s)	8
AasI	GACNNNNNNGTC	1 cut(s)	533
Acc36I	ACCTGC	2 cut(s)	8, 548
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	584
AclI	AACGTT	1 cut(s)	2165
AclWI	GGATC	3 cut(s)	417, 430, 2238
AcoI	YGGCCR	3 cut(s)	405, 519, 1422
AcsI	RAATTY	2 cut(s)	377, 2077
AcuI	CTGAAG	4 cut(s)	701, 728, 812, 1999
AcyI	GRCGYC	1 cut(s)	1820
AfaI	GTAC	2 cut(s)	1908, 1960
AfeI	AGCGCT	1 cut(s)	1612
AfiI	CCNNNNNNNGG	1 cut(s)	528
AflII	CTTAAG	1 cut(s)	1870
AjnI	CCWGG	2 cut(s)	418, 450
Alw21I	GWGCWC	5 cut(s)	468, 717, 1309, 1383, 1900
Alw26I	GTCTC	4 cut(s)	397, 1459, 2013, 2143
Alw44I	GTGCAC	1 cut(s)	1896
AlwI	GGATC	3 cut(s)	417, 430, 2238
Aor51HI	AGCGCT	1 cut(s)	1612
AoxI	GGCC	8 cut(s)	405, 453, 519, 552, 1372, 1422, 2185, 2247
ApaLI	GTGCAC	1 cut(s)	1896
ApeKI	GCWGC	3 cut(s)	39, 986, 1145
ApoI	RAATTY	2 cut(s)	377, 2077
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 251, 283
AseI	ATTAAT	2 cut(s)	1113, 1758
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	4 cut(s)	359, 584, 1003, 1613
AspS9I	GGNCC	4 cut(s)	454, 526, 573, 1372
AsuHPI	GGTGA	7 cut(s)	32, 676, 722, 869, 2000, 2158, 2318
AsuII	TTCGAA	1 cut(s)	1703
AvaII	GGWCC	2 cut(s)	526, 573
BaeGI	GKGCMC	1 cut(s)	1900
BalI	TGGCCA	2 cut(s)	521, 1424
BamHI	GGATCC	1 cut(s)	422
BanII	GRGCYC	3 cut(s)	468, 483, 1383
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	5 cut(s)	468, 717, 1309, 1383, 1900
BbvCI	CCTCAGC	1 cut(s)	2358
BbvI	GCAGC	3 cut(s)	51, 973, 1132
BceAI	ACGGC	1 cut(s)	1359
BciT130I	CCWGG	2 cut(s)	420, 452
BciVI	GTATCC	1 cut(s)	1401
BclI	TGATCA	1 cut(s)	1209
BcoDI	GTCTC	4 cut(s)	397, 1459, 2013, 2143
BfaI	CTAG	1 cut(s)	1131
BfmI	CTRYAG	1 cut(s)	978
BfoI	RGCGCY	2 cut(s)	360, 1614
BfrI	CTTAAG	1 cut(s)	1870
BfuAI	ACCTGC	2 cut(s)	8, 548
BfuI	GTATCC	1 cut(s)	1401
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	9 cut(s)	15, 40, 49, 157, 349, 555, 585, 987, 1146
BlsI	GCNGC	9 cut(s)	16, 41, 50, 158, 350, 556, 586, 988, 1147
BmcAI	AGTACT	1 cut(s)	1908
Bme1390I	CCNGG	2 cut(s)	420, 452
Bme18I	GGWCC	2 cut(s)	526, 573
BmgT120I	GGNCC	4 cut(s)	454, 526, 573, 1372
BmiI	GGNNCC	3 cut(s)	412, 424, 1373
BmrFI	CCNGG	2 cut(s)	420, 452
BmsI	GCATC	4 cut(s)	691, 1132, 1618, 1675
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpmI	CTGGAG	4 cut(s)	402, 482, 1753, 1845
Bpu10I	CCTNAGC	2 cut(s)	152, 2358
Bpu14I	TTCGAA	1 cut(s)	1703
BpuEI	CTTGAG	3 cut(s)	60, 533, 1502
BsaHI	GRCGYC	1 cut(s)	1820
BsaI	GGTCTC	1 cut(s)	2143
BsaJI	CCNNGG	6 cut(s)	352, 426, 486, 522, 576, 1149
BsaWI	WCCGGW	2 cut(s)	528, 2344
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 805, 830, 835, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	266, 1770
Bse3DI	GCAATG	6 cut(s)	470, 664, 1003, 1528, 1590, 1975
BseBI	CCWGG	2 cut(s)	420, 452
BseDI	CCNNGG	6 cut(s)	352, 426, 486, 522, 576, 1149
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMI	GCAATG	6 cut(s)	470, 664, 1003, 1528, 1590, 1975
BseMII	CTCAG	3 cut(s)	83, 143, 2372
BseNI	ACTGG	2 cut(s)	266, 1770
BseRI	GAGGAG	6 cut(s)	85, 230, 278, 312, 430, 826
BseSI	GKGCMC	1 cut(s)	1900
BseXI	GCAGC	3 cut(s)	51, 973, 1132
BseYI	CCCAGC	2 cut(s)	587, 1880
BsgI	GTGCAG	3 cut(s)	151, 1461, 1474
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	8 cut(s)	407, 455, 521, 554, 1374, 1424, 2187, 2249
BsiHKAI	GWGCWC	5 cut(s)	468, 717, 1309, 1383, 1900
BsiSI	CCGG	4 cut(s)	408, 529, 765, 2345
BslFI	GGGAC	4 cut(s)	521, 1373, 1605, 1898
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	4 cut(s)	397, 1459, 2013, 2143
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	4 cut(s)	521, 1373, 1605, 1898
BsmI	GAATGC	2 cut(s)	29, 446
BsnI	GGCC	8 cut(s)	407, 455, 521, 554, 1374, 1424, 2187, 2249
Bso31I	GGTCTC	1 cut(s)	2143
Bsp119I	TTCGAA	1 cut(s)	1703
Bsp1286I	GDGCHC	6 cut(s)	468, 483, 717, 1309, 1383, 1900
Bsp143I	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
Bsp19I	CCATGG	1 cut(s)	576
BspANI	GGCC	8 cut(s)	407, 455, 521, 554, 1374, 1424, 2187, 2249
BspCNI	CTCAG	3 cut(s)	82, 144, 2371
BspFNI	CGCG	1 cut(s)	584
BspHI	TCATGA	2 cut(s)	960, 1795
BspLI	GGNNCC	3 cut(s)	412, 424, 1373
BspMI	ACCTGC	2 cut(s)	8, 548
BspPI	GGATC	3 cut(s)	417, 430, 2238
BspT104I	TTCGAA	1 cut(s)	1703
BspTI	CTTAAG	1 cut(s)	1870
BspTNI	GGTCTC	1 cut(s)	2143
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	6 cut(s)	470, 664, 1003, 1528, 1590, 1975
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	266, 1770
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	6 cut(s)	352, 426, 486, 522, 576, 1149
BssMI	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
BssNI	GRCGYC	1 cut(s)	1820
BssT1I	CCWWGG	4 cut(s)	426, 522, 576, 1149
Bst2UI	CCWGG	2 cut(s)	420, 452
Bst4CI	ACNGT	7 cut(s)	613, 907, 1318, 1931, 1945, 2056, 2066
Bst6I	CTCTTC	4 cut(s)	296, 788, 1015, 1062
BstACI	GRCGYC	1 cut(s)	1820
BstAFI	CTTAAG	1 cut(s)	1870
BstBI	TTCGAA	1 cut(s)	1703
BstC8I	GCNNGC	4 cut(s)	12, 1457, 1690, 1863
BstDEI	CTNAG	5 cut(s)	69, 152, 2031, 2189, 2358
BstDSI	CCRYGG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	584
BstH2I	RGCGCY	2 cut(s)	360, 1614
BstHHI	GCGC	4 cut(s)	359, 584, 1003, 1613
BstKTI	GATC	5 cut(s)	425, 1212, 1292, 1653, 2233
BstMAI	GTCTC	4 cut(s)	397, 1459, 2013, 2143
BstMBI	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
BstMWI	GCNNNNNNNGC	9 cut(s)	39, 45, 48, 165, 354, 452, 472, 505, 983
BstNI	CCWGG	2 cut(s)	420, 452
BstSCI	CCNGG	2 cut(s)	418, 450
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	1 cut(s)	1900
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	51, 973, 1132
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	1401
BsuRI	GGCC	8 cut(s)	407, 455, 521, 554, 1374, 1424, 2187, 2249
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	783
BtsI	GCAGTG	2 cut(s)	1473, 1642
BtsIMutI	CAGTG	8 cut(s)	618, 704, 826, 903, 1473, 1642, 1941, 2071
BveI	ACCTGC	2 cut(s)	8, 548
Cac8I	GCNNGC	4 cut(s)	12, 1457, 1690, 1863
CciI	TCATGA	2 cut(s)	960, 1795
CfoI	GCGC	4 cut(s)	359, 584, 1003, 1613
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	4 cut(s)	454, 526, 573, 1372
CseI	GACGC	1 cut(s)	1809
Csp6I	GTAC	2 cut(s)	1907, 1959
CviAII	CATG	9 cut(s)	577, 863, 953, 961, 1460, 1796, 1970, 2005, 2023
CviQI	GTAC	2 cut(s)	1907, 1959
DdeI	CTNAG	5 cut(s)	69, 152, 2031, 2189, 2358
DpnI	GATC	5 cut(s)	424, 1211, 1291, 1652, 2232
DpnII	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	3 cut(s)	405, 519, 1422
Eam1104I	CTCTTC	4 cut(s)	296, 788, 1015, 1062
EarI	CTCTTC	4 cut(s)	296, 788, 1015, 1062
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	2 cut(s)	466, 1381
Eco130I	CCWWGG	4 cut(s)	426, 522, 576, 1149
Eco147I	AGGCCT	2 cut(s)	2187, 2249
Eco24I	GRGCYC	3 cut(s)	468, 483, 1383
Eco31I	GGTCTC	1 cut(s)	2143
Eco32I	GATATC	3 cut(s)	1735, 1993, 2342
Eco47I	GGWCC	2 cut(s)	526, 573
Eco47III	AGCGCT	1 cut(s)	1612
Eco53kI	GAGCTC	2 cut(s)	466, 1381
Eco57I	CTGAAG	4 cut(s)	701, 728, 812, 1999
EcoICRI	GAGCTC	2 cut(s)	466, 1381
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	418, 450
EcoRV	GATATC	3 cut(s)	1735, 1993, 2342
EcoT14I	CCWWGG	4 cut(s)	426, 522, 576, 1149
EcoT38I	GRGCYC	3 cut(s)	468, 483, 1383
ErhI	CCWWGG	4 cut(s)	426, 522, 576, 1149
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	9 cut(s)	580, 866, 956, 964, 1463, 1799, 1973, 2008, 2026
FaqI	GGGAC	4 cut(s)	521, 1373, 1605, 1898
FatI	CATG	9 cut(s)	576, 862, 952, 960, 1459, 1795, 1969, 2004, 2022
FauI	CCCGC	2 cut(s)	20, 546
FbaI	TGATCA	1 cut(s)	1209
Fnu4HI	GCNGC	9 cut(s)	15, 40, 49, 157, 349, 555, 585, 987, 1146
FriOI	GRGCYC	3 cut(s)	468, 483, 1383
Fsp4HI	GCNGC	9 cut(s)	15, 40, 49, 157, 349, 555, 585, 987, 1146
FspBI	CTAG	1 cut(s)	1131
GlaI	GCGC	4 cut(s)	358, 583, 1002, 1612
GluI	GCNGC	9 cut(s)	15, 40, 49, 157, 349, 555, 585, 987, 1146
GsaI	CCCAGC	2 cut(s)	591, 1884
GsuI	CTGGAG	4 cut(s)	402, 482, 1753, 1845
HaeII	RGCGCY	2 cut(s)	360, 1614
HaeIII	GGCC	8 cut(s)	407, 455, 521, 554, 1374, 1424, 2187, 2249
HapII	CCGG	4 cut(s)	408, 529, 765, 2345
HgaI	GACGC	1 cut(s)	1809
HhaI	GCGC	4 cut(s)	359, 584, 1003, 1613
Hin1I	GRCGYC	1 cut(s)	1820
Hin1II	CATG	9 cut(s)	580, 866, 956, 964, 1463, 1799, 1973, 2008, 2026
Hin6I	GCGC	4 cut(s)	357, 582, 1001, 1611
HinP1I	GCGC	4 cut(s)	357, 582, 1001, 1611
HinfI	GANTC	8 cut(s)	57, 212, 544, 1467, 1792, 1966, 2010, 2278
HpaII	CCGG	4 cut(s)	408, 529, 765, 2345
HphI	GGTGA	7 cut(s)	32, 676, 722, 869, 2000, 2158, 2318
Hpy166II	GTNNAC	3 cut(s)	1567, 1639, 1898
Hpy188I	TCNGA	8 cut(s)	245, 397, 490, 1227, 1515, 1602, 2018, 2049
Hpy188III	TCNNGA	6 cut(s)	461, 849, 961, 1796, 1824, 2258
Hpy8I	GTNNAC	3 cut(s)	1567, 1639, 1898
Hpy99I	CGWCG	2 cut(s)	212, 722
HpyCH4III	ACNGT	7 cut(s)	613, 907, 1318, 1931, 1945, 2056, 2066
HpyCH4IV	ACGT	3 cut(s)	390, 402, 2165
HpyF10VI	GCNNNNNNNGC	9 cut(s)	39, 45, 48, 165, 354, 452, 472, 505, 983
HpyF3I	CTNAG	5 cut(s)	69, 152, 2031, 2189, 2358
HpySE526I	ACGT	3 cut(s)	390, 402, 2165
Hsp92I	GRCGYC	1 cut(s)	1820
Hsp92II	CATG	9 cut(s)	580, 866, 956, 964, 1463, 1799, 1973, 2008, 2026
HspAI	GCGC	4 cut(s)	357, 582, 1001, 1611
Ksp22I	TGATCA	1 cut(s)	1209
Kzo9I	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
LmnI	GCTCC	6 cut(s)	30, 332, 364, 463, 994, 1312
Lsp1109I	GCAGC	3 cut(s)	51, 973, 1132
LweI	GCATC	4 cut(s)	691, 1132, 1618, 1675
MaeI	CTAG	1 cut(s)	1131
MaeII	ACGT	3 cut(s)	390, 402, 2165
MaeIII	GTNAC	6 cut(s)	220, 901, 1318, 1528, 1843, 1948
MalI	GATC	5 cut(s)	424, 1211, 1291, 1652, 2232
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
MfeI	CAATTG	2 cut(s)	178, 1327
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	6 cut(s)	468, 483, 717, 1309, 1383, 1900
MlsI	TGGCCA	2 cut(s)	521, 1424
MluCI	AATT	8 cut(s)	178, 377, 831, 896, 1327, 2077, 2200, 2222
MluNI	TGGCCA	2 cut(s)	521, 1424
MlyI	GAGTC	2 cut(s)	66, 1461
MmeI	TCCRAC	2 cut(s)	259, 268
Mox20I	TGGCCA	2 cut(s)	521, 1424
MroXI	GAANNNNTTC	1 cut(s)	726
MscI	TGGCCA	2 cut(s)	521, 1424
MslI	CAYNNNNRTG	1 cut(s)	965
Msp20I	TGGCCA	2 cut(s)	521, 1424
MspA1I	CMGCKG	1 cut(s)	541
MspCI	CTTAAG	1 cut(s)	1870
MspI	CCGG	4 cut(s)	408, 529, 765, 2345
MspR9I	CCNGG	2 cut(s)	420, 452
MunI	CAATTG	2 cut(s)	178, 1327
Mva1269I	GAATGC	2 cut(s)	29, 446
MvaI	CCWGG	2 cut(s)	420, 452
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	9 cut(s)	39, 45, 48, 165, 354, 452, 472, 505, 983
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
NlaIII	CATG	9 cut(s)	580, 866, 956, 964, 1463, 1799, 1973, 2008, 2026
NlaIV	GGNNCC	3 cut(s)	412, 424, 1373
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	3 cut(s)	901, 1528, 1948
NspV	TTCGAA	1 cut(s)	1703
PagI	TCATGA	2 cut(s)	960, 1795
PaqCI	CACCTGC	1 cut(s)	8
PceI	AGGCCT	2 cut(s)	2187, 2249
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	2 cut(s)	29, 446
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	6 cut(s)	212, 544, 1792, 1966, 2010, 2278
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	9 cut(s)	16, 41, 50, 158, 350, 556, 586, 988, 1147
PleI	GAGTC	2 cut(s)	65, 1461
PpsI	GAGTC	2 cut(s)	65, 1461
PshBI	ATTAAT	2 cut(s)	1113, 1758
PsiI	TTATAA	1 cut(s)	1094
Psp124BI	GAGCTC	2 cut(s)	468, 1383
Psp1406I	AACGTT	1 cut(s)	2165
Psp6I	CCWGG	2 cut(s)	418, 450
PspFI	CCCAGC	2 cut(s)	587, 1880
PspGI	CCWGG	2 cut(s)	418, 450
PspN4I	GGNNCC	3 cut(s)	412, 424, 1373
PspPI	GGNCC	4 cut(s)	454, 526, 573, 1372
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	2 cut(s)	1908, 1960
RsaNI	GTAC	2 cut(s)	1907, 1959
RseI	CAYNNNNRTG	1 cut(s)	965
SacI	GAGCTC	2 cut(s)	468, 1383
SatI	GCNGC	9 cut(s)	15, 40, 49, 157, 349, 555, 585, 987, 1146
Sau3AI	GATC	5 cut(s)	422, 1209, 1289, 1650, 2230
Sau96I	GGNCC	4 cut(s)	454, 526, 573, 1372
ScaI	AGTACT	1 cut(s)	1908
SchI	GAGTC	2 cut(s)	66, 1461
ScrFI	CCNGG	2 cut(s)	420, 452
SduI	GDGCHC	6 cut(s)	468, 483, 717, 1309, 1383, 1900
SfaNI	GCATC	4 cut(s)	691, 1132, 1618, 1675
SfcI	CTRYAG	1 cut(s)	978
SfuI	TTCGAA	1 cut(s)	1703
SinI	GGWCC	2 cut(s)	526, 573
SmiMI	CAYNNNNRTG	1 cut(s)	965
SmlI	CTYRAG	4 cut(s)	75, 548, 1481, 1870
SmoI	CTYRAG	4 cut(s)	75, 548, 1481, 1870
Sse9I	AATT	8 cut(s)	178, 377, 831, 896, 1327, 2077, 2200, 2222
SseBI	AGGCCT	2 cut(s)	2187, 2249
SspI	AATATT	1 cut(s)	1573
SspMI	CTAG	1 cut(s)	1131
SstI	GAGCTC	2 cut(s)	468, 1383
StuI	AGGCCT	2 cut(s)	2187, 2249
StyD4I	CCNGG	2 cut(s)	418, 450
StyI	CCWWGG	4 cut(s)	426, 522, 576, 1149
TaaI	ACNGT	7 cut(s)	613, 907, 1318, 1931, 1945, 2056, 2066
TaiI	ACGT	3 cut(s)	393, 405, 2168
TaqI	TCGA	6 cut(s)	384, 717, 848, 1703, 1995, 2233
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	8 cut(s)	178, 377, 831, 896, 1327, 2077, 2200, 2222
TatI	WGTACW	1 cut(s)	1906
TauI	GCSGC	6 cut(s)	17, 51, 159, 351, 557, 587
TfiI	GAWTC	6 cut(s)	212, 544, 1792, 1966, 2010, 2278
TscAI	CASTG	8 cut(s)	618, 711, 826, 910, 1480, 1649, 1948, 2071
TseFI	GTSAC	3 cut(s)	901, 1528, 1948
TseI	GCWGC	3 cut(s)	39, 986, 1145
Tsp45I	GTSAC	3 cut(s)	901, 1528, 1948
TspDTI	ATGAA	6 cut(s)	617, 977, 1409, 1784, 1958, 2147
TspGWI	ACGGA	1 cut(s)	981
TspRI	CASTG	8 cut(s)	618, 711, 826, 910, 1480, 1649, 1948, 2071
Vha464I	CTTAAG	1 cut(s)	1870
VneI	GTGCAC	1 cut(s)	1896
VpaK11BI	GGWCC	2 cut(s)	526, 573
VspI	ATTAAT	2 cut(s)	1113, 1758
XapI	RAATTY	2 cut(s)	377, 2077
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	1 cut(s)	1131
ZrmI	AGTACT	1 cut(s)	1908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.