Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

11716447 .. 11717043

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCTTCACCCAGGAGCAAAGTTTCGGGTTGATGACTTTACCGGCGATGTTGTGATCGGCTCATTATTGAGGAGAGAGCAGATAGGGAGGAGTGTCAGTGAGGAAGAAATTGTGGAGTTGGTGTCGAAATTTGGTAAGCATGGTGTGTTTCCAAATAACACAATACTTACGAAATTGGTCATTGTTTTGTGTAGGAATAGGAAGGTTTGTATTGCTTGGGATGTTTTACATGATGTCATGAAGATGGGTGGTGCTGTAGAAGCTGCTTCGTGCAATGCGCTTTTGACAGCTTTGGGAAGAGCTAATGATTTTAAGAGAATGAGTGAGCTTATGGCGAAGATGGAAGAGATGGGCATTAAGCCCGATGTTATAACTTTTGGTATTCTTATTAATCAGTTATGCAAGTCTAGGAGAATAGATGCTGCCTTGGAGGTGTTTGAAAAGATGAGTGGAGGGGTAAAGGGGGTTTCCGCTGAACTAGATGTGATCGTCTATAACACTCTGATTGATGGACTTTGCAAAGTGGGAAGGCAGGAAGAAGGATTGCGTTTGTGGATTCTGATCTGCCTTTTTGTGATAGAAAGGAGAGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

198

Amino Acids

22.06

Weight (kDa)

6.84

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	65 - 184	7.5e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	75 - 132	1.9e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	78 - 152	3.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	89 - 135	7.4e-12	PPR repeat family
PPR_1	PF12854	117 - 150	7.4e-12	PPR repeat
PPR_1	PF12854	159 - 184	5.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AciI	CCGC	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	4 cut(s)	263, 290, 302, 328
AluI	AGCT	4 cut(s)	263, 290, 302, 328
ApeKI	GCWGC	2 cut(s)	263, 422
ApoI	RAATTY	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	250, 409
BccI	CCATC	4 cut(s)	238, 334, 343, 503
BciT130I	CCWGG	1 cut(s)	12
BfaI	CTAG	2 cut(s)	408, 479
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	264, 423
BlsI	GCNGC	2 cut(s)	265, 424
Bme1390I	CCNGG	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	10, 426
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 107, 112, 137
Bse118I	RCCGGY	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	10, 426
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	560
BseMI	GCAATG	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	85, 103
BseXI	GCAGC	2 cut(s)	250, 409
BsiSI	CCGG	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	54, 486, 561
BspACI	CCGC	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	237
BspQI	GCTCTTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	10, 426
BssMI	GATC	3 cut(s)	54, 486, 561
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	292, 339
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	57, 489, 564
BstMBI	GATC	3 cut(s)	54, 486, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	250, 409
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	41
CviAII	CATG	3 cut(s)	140, 230, 238
CviJI	RGCY	6 cut(s)	60, 263, 290, 302, 328, 361
CviKI_1	RGCY	6 cut(s)	60, 263, 290, 302, 328, 361
DpnI	GATC	3 cut(s)	56, 488, 563
DpnII	GATC	3 cut(s)	54, 486, 561
Eam1104I	CTCTTC	2 cut(s)	292, 339
EarI	CTCTTC	2 cut(s)	292, 339
Eco130I	CCWWGG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	143, 233, 241
FaiI	YATR	7 cut(s)	141, 231, 239, 332, 371, 400, 495
FatI	CATG	3 cut(s)	139, 229, 237
Fnu4HI	GCNGC	2 cut(s)	264, 423
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	264, 423
FspBI	CTAG	2 cut(s)	408, 479
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	264, 423
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	143, 233, 241
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	556
HpaII	CCGG	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	504, 561
Hpy188III	TCNNGA	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	196, 522, 533
HpyCH4V	TGCA	3 cut(s)	273, 402, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	143, 233, 241
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	54, 486, 561
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	3 cut(s)	24, 55, 518
Lsp1109I	GCAGC	2 cut(s)	250, 409
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	408, 479
MalI	GATC	3 cut(s)	56, 488, 563
MboI	GATC	3 cut(s)	54, 486, 561
MboII	GAAGA	6 cut(s)	116, 253, 309, 349, 356, 548
MluCI	AATT	3 cut(s)	108, 128, 173
MnlI	CCTC	5 cut(s)	63, 81, 94, 424, 446
MseI	TTAA	3 cut(s)	312, 357, 390
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	3 cut(s)	54, 486, 561
NlaIII	CATG	3 cut(s)	143, 233, 241
PagI	TCATGA	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	265, 424
PshBI	ATTAAT	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	312, 357, 390
SatI	GCNGC	2 cut(s)	264, 423
Sau3AI	GATC	3 cut(s)	54, 486, 561
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	6 cut(s)	207, 265, 292, 304, 330, 435
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	108, 128, 173
SsiI	CCGC	1 cut(s)	471
SspMI	CTAG	2 cut(s)	408, 479
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	426
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	108, 128, 173
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	3 cut(s)	312, 357, 390
Tru9I	TTAA	3 cut(s)	312, 357, 390
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	2 cut(s)	263, 422
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	2 cut(s)	408, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.