Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

17622874 .. 17625288

Gene Structure 2415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGAACAGTCTATCACTCTCAGCCTCACGGCACTCAAAACCCCTCCTCCACCTTCTTAAACCCCAAACCCCAAAACCCAAATCCCCAGTCCTCATCCTCAGTCACCACCTCTGCACTAATCCCACTCCCAATCTCAGCCCCAATCCGGGGGACGACGACACCTTCATAACCCAAGTGCTCCAACTCCTCCAAACCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCTCCAACTCAACCCCTCCTTCATCTCACTCCGTCTTCCACATCACTCGCCGCCTCGGCGCTCCGTCCAAAGCCATCAAATTCTTCGACTACATCTCCGAAAATGTGGGAACAACAACCCCTCCAGTCCCCAATGGTTTACTCTCTTCCGCATTCCAGGCCGTTCTGGAGCTCACATTGCGAGAACCCATATCGAAAAAGAAGCTCTTTCAGCTTTACGAGATGGCGAAGAAGCGGAATGTGGCGCTTGATGTAAACGCCGCAGCTCTGCTTGTTCGGTCCCTGGGAACTGCTGGCATGGTGGACGAGGCTGTCATGGTGTTTAATGAACTCGATTCGGGGTTGAAGAACACTCATATTCGCAATGTGGTGATTAGGTTGTTGCTGAACAAGGGGCGAGTTGATGATGCACTGAAGGTGCTCGACGAAATGCTTGACCCAGAAGCAAAGTTCCGGGTGGACGACTTTACCGGGGATATTGTGATTGGATCATTGTTGAGGAAAGAGCAGAAAGGGAGGAGAGTCAGTGTGGAGGAAATTGTGGACTTGGTGTCGAAATTTGGTAGGCAAGGTGTGTTTCCTAATAGCCCGATACTTACGAAATTGGTGACTGTTTTGTGTAGGAATGGGAAGGTTAGTCGCGCTTGGGATGTGTTGCATGATGTTATGGAGATGGGTGGTGCTGTAGAAGCTGCTTCTTGCAATGCGCTTTTGACAGCTTTGGGAAGAGGTAATGATTTTAAGAGGATGAGTGAGCTTATGGTGAAGATGGAAGAGGTGGGCATTAAGCCGAATCTTATTACTTTTGGTATTCTTATTAATCGCTTATGTAAGTCTGGGAGACTAGATGCTGCCTTGGAGGTGTTTGAGAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGCTAAACCGGATGTGATTATCTATAACACTTTGATTGATGGACTTTGTAAAGCGGGAAGGCCAGAAGAGGGATTGCGTTTGATGGGAAAGATGGGATCGCAAGATGGCTGTGCTCCTAATACTGTTACGTACAATTGTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAGGGGTCGTGAGCTCTTTGACAAAATGAAGGAGGAAGGGATACCGCTAAATGTGGTCACCCTCAATACTTTGCTTGATGGTTTGTGCAGGCATGGGAGACTCAACACTGCACTTGAGTTCTTCAAGGAGATGCAGAGGGATGATCTGAAAGGCAATGCCGTTACTTACACTATCTTAATCACATCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTGATCAGATGTTGAACGCTGAATGTCCCAAAGATGCAAAAGTTTATCACTGCTTGATCTCTGGTTTAAGCCTAGCCGGAAGGATGGAGGATGCCAGCTTTGTTGTCTCAAAGTTGAAGGAGGCTGGGTTCTCCATGGATAATGTTTCCTACAATGTAATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAAGCGTCTGGAGTGAAGCCTGATAGTGTGACATACAACACCTTGCTTGCCTACTTAAGCAAAGCTGGGGACTTCAAAAGTGCACATAAAGTACTTGACAGGATGAGGGATGAGGGTATTGTTCCCACTGTGGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGCGATATTGACAAAGCCATGAGAATCTTCAGAGACATGGGTTCTAAGTCAAAGATACCTCCGAATACTGTAATATACAATGATTTAATAAATTCTCTCTGTAAGAAGAATGATGTGGAACAGGCTCTTTATTTGATGGATGATATGAAGGATAAGGGGGTCAGACCTAATACCCAAACGTTCAATGCCTTGTTCAAAGGCCTTAGAGAGAACAATTTATTAGAGAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATAACGATGGAAATTCTTACCGAATGGCTTTCTTGTGTTGGTGAAATACGGAGGTTGAGAAAGTTTGTTCAAGGATATCCAGTTTCAAAGACAGAGGGCAAAGCGGCTGGTTTCAAAGCAACAGAAGGGAAACCCGCTGGTTTCAAAGCTACGGAGGGCAAAGCCGCTGGTTTCAAAGCGACAGAAGGCAACGATAACATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

805

Amino Acids

88.99

Weight (kDa)

8.19

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	297 - 353	1.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	311 - 357	1.3e-08	PPR repeat family
PPR_1	PF12854	340 - 372	5.3e-12	PPR repeat
PPR_1	PF12854	381 - 410	3.1e-10	PPR repeat
PPR_2	PF13041	382 - 431	2.6e-15	PPR repeat family
PPR	PF01535	386 - 411	1e-06	PPR repeat
PPR_1	PF12854	414 - 447	6.4e-10	PPR repeat
TPR_24	PF23276	415 - 515	2.3e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	418 - 467	2.7e-16	PPR repeat family
PPR	PF01535	421 - 451	5.8e-08	PPR repeat
PPR_1	PF12854	450 - 482	4.2e-12	PPR repeat
PPR_2	PF13041	454 - 502	8.8e-17	PPR repeat family
PPR	PF01535	456 - 485	1.4e-07	PPR repeat
PPR_1	PF12854	486 - 516	3.5e-09	PPR repeat
PPR_2	PF13041	489 - 535	1e-09	PPR repeat family
PPR	PF01535	491 - 519	7.1e-06	PPR repeat
PPR_2	PF13041	524 - 571	3.6e-07	PPR repeat family
TPR_24	PF23276	538 - 655	1.2e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	559 - 602	4.5e-13	PPR repeat family
PPR_long	PF17177	560 - 658	2.2e-10	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	561 - 591	5e-06	PPR repeat
PPR_3	PF13812	583 - 639	2.3e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	590 - 622	1.1e-07	PPR repeat
PPR_2	PF13041	593 - 641	8.2e-15	PPR repeat family
PPR_1	PF12854	625 - 656	5.8e-11	PPR repeat
PPR_2	PF13041	628 - 666	1.2e-06	PPR repeat family
PPR_long	PF17177	647 - 745	1.9e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	661 - 733	8.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	662 - 693	1.6e-08	PPR repeat
PPR_2	PF13041	664 - 711	4e-17	PPR repeat family
PPR	PF01535	667 - 697	4.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	548
AccII	CGCG	1 cut(s)	879
AciI	CCGC	9 cut(s)	289, 387, 472, 498, 1190, 1355, 2312, 2343, 2373
AclI	AACGTT	1 cut(s)	2108
AclWI	GGATC	3 cut(s)	733, 1240, 2181
AcsI	RAATTY	4 cut(s)	317, 794, 2020, 2220
AcuI	CTGAAG	2 cut(s)	671, 1942
AfaI	GTAC	3 cut(s)	1268, 1851, 1903
AfiI	CCNNNNNNNGG	4 cut(s)	145, 146, 147, 1205
AflII	CTTAAG	1 cut(s)	1813
AhdI	GACNNNNNGTC	1 cut(s)	787
AjnI	CCWGG	2 cut(s)	393, 519
AloI	GAACNNNNNNTCC	2 cut(s)	1649, 1681
Alw21I	GWGCWC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
Alw26I	GTCTC	4 cut(s)	1072, 1402, 1648, 1956
Alw44I	GTGCAC	1 cut(s)	1839
AlwI	GGATC	3 cut(s)	733, 1240, 2181
AoxI	GGCC	4 cut(s)	396, 1196, 2128, 2190
ApaLI	GTGCAC	1 cut(s)	1839
ApeKI	GCWGC	3 cut(s)	500, 929, 1088
ApoI	RAATTY	4 cut(s)	317, 794, 2020, 2220
ArsI	GACNNNNNNTTYG	4 cut(s)	72, 104, 197, 229
AseI	ATTAAT	2 cut(s)	1056, 1701
AspLEI	GCGC	4 cut(s)	299, 484, 881, 946
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	3 cut(s)	147, 692, 709
AsuHPI	GGTGA	6 cut(s)	95, 619, 856, 1012, 1360, 2261
AvaII	GGWCC	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	1843
BanII	GRGCYC	2 cut(s)	411, 1326
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
BbvI	GCAGC	3 cut(s)	512, 916, 1075
BceAI	ACGGC	3 cut(s)	44, 383, 1454
BciT130I	CCWGG	2 cut(s)	395, 521
BciVI	GTATCC	1 cut(s)	1344
BclI	TGATCA	1 cut(s)	1540
BcnI	CCSGG	3 cut(s)	147, 692, 709
BcoDI	GTCTC	4 cut(s)	1072, 1402, 1648, 1956
BfaI	CTAG	2 cut(s)	1082, 1610
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	2 cut(s)	300, 485
BfrI	CTTAAG	1 cut(s)	1813
BfuI	GTATCC	1 cut(s)	1344
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 2313, 2373
BlsI	GCNGC	7 cut(s)	290, 499, 502, 931, 1090, 2314, 2374
BmcAI	AGTACT	1 cut(s)	1851
Bme1390I	CCNGG	5 cut(s)	147, 395, 521, 692, 709
Bme18I	GGWCC	1 cut(s)	516
BmeRI	GACNNNNNGTC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	5 cut(s)	147, 395, 521, 692, 709
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	5 cut(s)	634, 1075, 1431, 1561, 1618
BmuI	ACTGGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	265
BpmI	CTGGAG	4 cut(s)	345, 425, 1696, 1788
BpuEI	CTTGAG	1 cut(s)	1445
BpuMI	CCSGG	3 cut(s)	147, 692, 709
BsaAI	YACGTR	1 cut(s)	1266
BsaJI	CCNNGG	7 cut(s)	146, 292, 519, 520, 708, 1092, 1671
BsaWI	WCCGGW	1 cut(s)	1144
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 146, 147, 1205
Bse1I	ACTGG	5 cut(s)	86, 212, 362, 1713, 2288
Bse3DI	GCAATG	6 cut(s)	413, 607, 946, 1471, 1533, 1918
BseBI	CCWGG	2 cut(s)	395, 521
BseDI	CCNNGG	7 cut(s)	146, 292, 519, 520, 708, 1092, 1671
BseLI	CCNNNNNNNGG	4 cut(s)	145, 146, 147, 1205
BseMI	GCAATG	6 cut(s)	413, 607, 946, 1471, 1533, 1918
BseMII	CTCAG	3 cut(s)	33, 112, 148
BseNI	ACTGG	5 cut(s)	86, 212, 362, 1713, 2288
BseRI	GAGGAG	5 cut(s)	35, 176, 224, 769, 1134
BseSI	GKGCMC	1 cut(s)	1843
BseXI	GCAGC	3 cut(s)	512, 916, 1075
BseYI	CCCAGC	2 cut(s)	1661, 1823
BsgI	GTGCAG	3 cut(s)	97, 1404, 1417
Bsh1236I	CGCG	1 cut(s)	879
BshFI	GGCC	4 cut(s)	398, 1198, 2130, 2192
BsiHKAI	GWGCWC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
BsiSI	CCGG	5 cut(s)	146, 691, 708, 1145, 1614
BslFI	GGGAC	6 cut(s)	164, 350, 502, 1316, 1548, 1841
BslI	CCNNNNNNNGG	4 cut(s)	145, 146, 147, 1205
BsmAI	GTCTC	4 cut(s)	1072, 1402, 1648, 1956
BsmFI	GGGAC	6 cut(s)	164, 350, 502, 1316, 1548, 1841
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	4 cut(s)	398, 1198, 2130, 2192
Bsp1286I	GDGCHC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
Bsp143I	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
Bsp19I	CCATGG	1 cut(s)	1671
BspACI	CCGC	9 cut(s)	289, 387, 472, 498, 1190, 1355, 2312, 2343, 2373
BspANI	GGCC	4 cut(s)	398, 1198, 2130, 2192
BspCNI	CTCAG	3 cut(s)	32, 111, 147
BspFNI	CGCG	1 cut(s)	879
BspHI	TCATGA	1 cut(s)	1738
BspLI	GGNNCC	1 cut(s)	518
BspPI	GGATC	3 cut(s)	733, 1240, 2181
BspTI	CTTAAG	1 cut(s)	1813
BsrDI	GCAATG	6 cut(s)	413, 607, 946, 1471, 1533, 1918
BsrI	ACTGG	5 cut(s)	86, 212, 362, 1713, 2288
BssECI	CCNNGG	7 cut(s)	146, 292, 519, 520, 708, 1092, 1671
BssMI	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
BssT1I	CCWWGG	2 cut(s)	1092, 1671
Bst2UI	CCWGG	2 cut(s)	395, 521
Bst4CI	ACNGT	5 cut(s)	8, 850, 1261, 1888, 1999
Bst6I	CTCTTC	5 cut(s)	242, 388, 958, 1005, 1197
BstAFI	CTTAAG	1 cut(s)	1813
BstBAI	YACGTR	1 cut(s)	1266
BstC8I	GCNNGC	4 cut(s)	532, 1400, 1633, 1806
BstDEI	CTNAG	5 cut(s)	19, 98, 134, 1974, 2132
BstDSI	CCRYGG	1 cut(s)	1671
BstEII	GGTNACC	1 cut(s)	1366
BstFNI	CGCG	1 cut(s)	879
BstH2I	RGCGCY	2 cut(s)	300, 485
BstHHI	GCGC	4 cut(s)	299, 484, 881, 946
BstKTI	GATC	6 cut(s)	728, 1235, 1456, 1543, 1596, 2176
BstMAI	GTCTC	4 cut(s)	1072, 1402, 1648, 1956
BstMBI	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
BstMWI	GCNNNNNNNGC	6 cut(s)	294, 395, 415, 448, 926, 1929
BstNI	CCWGG	2 cut(s)	395, 521
BstPI	GGTNACC	1 cut(s)	1366
BstSCI	CCNGG	5 cut(s)	145, 393, 519, 690, 707
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	1843
BstSNI	TACGTA	1 cut(s)	1266
BstUI	CGCG	1 cut(s)	879
BstV1I	GCAGC	3 cut(s)	512, 916, 1075
BstV2I	GAAGAC	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	1344
BsuRI	GGCC	4 cut(s)	398, 1198, 2130, 2192
BtgI	CCRYGG	1 cut(s)	1671
BtsI	GCAGTG	2 cut(s)	1416, 1585
BtsIMutI	CAGTG	5 cut(s)	647, 769, 1416, 1585, 1884
Cac8I	GCNNGC	4 cut(s)	532, 1400, 1633, 1806
CciI	TCATGA	1 cut(s)	1738
CfoI	GCGC	4 cut(s)	299, 484, 881, 946
Cfr13I	GGNCC	1 cut(s)	516
CseI	GACGC	1 cut(s)	1752
Csp6I	GTAC	3 cut(s)	1267, 1850, 1902
CviAII	CATG	9 cut(s)	535, 553, 896, 1403, 1672, 1739, 1913, 1948, 1966
CviQI	GTAC	3 cut(s)	1267, 1850, 1902
DdeI	CTNAG	5 cut(s)	19, 98, 134, 1974, 2132
DpnI	GATC	6 cut(s)	727, 1234, 1455, 1542, 1595, 2175
DpnII	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
DrdI	GACNNNNNNGTC	1 cut(s)	548
DriI	GACNNNNNGTC	1 cut(s)	787
DseDI	GACNNNNNNGTC	1 cut(s)	548
Eam1104I	CTCTTC	5 cut(s)	242, 388, 958, 1005, 1197
Eam1105I	GACNNNNNGTC	1 cut(s)	787
EarI	CTCTTC	5 cut(s)	242, 388, 958, 1005, 1197
Ecl136II	GAGCTC	2 cut(s)	409, 1324
Eco105I	TACGTA	1 cut(s)	1266
Eco130I	CCWWGG	2 cut(s)	1092, 1671
Eco147I	AGGCCT	2 cut(s)	2130, 2192
Eco24I	GRGCYC	2 cut(s)	411, 1326
Eco32I	GATATC	1 cut(s)	2285
Eco47I	GGWCC	1 cut(s)	516
Eco53kI	GAGCTC	2 cut(s)	409, 1324
Eco57I	CTGAAG	2 cut(s)	671, 1942
Eco91I	GGTNACC	1 cut(s)	1366
EcoICRI	GAGCTC	2 cut(s)	409, 1324
EcoO65I	GGTNACC	1 cut(s)	1366
EcoRII	CCWGG	2 cut(s)	393, 519
EcoRV	GATATC	1 cut(s)	2285
EcoT14I	CCWWGG	2 cut(s)	1092, 1671
EcoT38I	GRGCYC	2 cut(s)	411, 1326
ErhI	CCWWGG	2 cut(s)	1092, 1671
FaeI	CATG	9 cut(s)	538, 556, 899, 1406, 1675, 1742, 1916, 1951, 1969
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	6 cut(s)	164, 350, 502, 1316, 1548, 1841
FatI	CATG	9 cut(s)	534, 552, 895, 1402, 1671, 1738, 1912, 1947, 1965
FauI	CCCGC	2 cut(s)	1183, 2350
FbaI	TGATCA	1 cut(s)	1540
Fnu4HI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 2313, 2373
FriOI	GRGCYC	2 cut(s)	411, 1326
Fsp4HI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 2313, 2373
FspBI	CTAG	2 cut(s)	1082, 1610
GlaI	GCGC	4 cut(s)	298, 483, 880, 945
GluI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 2313, 2373
GsaI	CCCAGC	2 cut(s)	1665, 1827
GsuI	CTGGAG	4 cut(s)	345, 425, 1696, 1788
HaeII	RGCGCY	2 cut(s)	300, 485
HaeIII	GGCC	4 cut(s)	398, 1198, 2130, 2192
HapII	CCGG	5 cut(s)	146, 691, 708, 1145, 1614
HgaI	GACGC	1 cut(s)	1752
HhaI	GCGC	4 cut(s)	299, 484, 881, 946
Hin1II	CATG	9 cut(s)	538, 556, 899, 1406, 1675, 1742, 1916, 1951, 1969
Hin6I	GCGC	4 cut(s)	297, 482, 879, 944
HinP1I	GCGC	4 cut(s)	297, 482, 879, 944
HinfI	GANTC	7 cut(s)	572, 759, 1030, 1410, 1735, 1909, 1953
HpaII	CCGG	5 cut(s)	146, 691, 708, 1145, 1614
HphI	GGTGA	6 cut(s)	95, 619, 856, 1012, 1360, 2261
Hpy166II	GTNNAC	7 cut(s)	377, 493, 541, 697, 781, 1510, 1841
Hpy188I	TCNGA	6 cut(s)	337, 1458, 1545, 1961, 1992, 2093
Hpy188III	TCNNGA	5 cut(s)	404, 1319, 1739, 1767, 2201
Hpy8I	GTNNAC	7 cut(s)	377, 493, 541, 697, 781, 1510, 1841
Hpy99I	CGWCG	2 cut(s)	158, 665
HpyCH4III	ACNGT	5 cut(s)	8, 850, 1261, 1888, 1999
HpyCH4IV	ACGT	2 cut(s)	1265, 2108
HpyF10VI	GCNNNNNNNGC	6 cut(s)	294, 395, 415, 448, 926, 1929
HpyF3I	CTNAG	5 cut(s)	19, 98, 134, 1974, 2132
HpySE526I	ACGT	2 cut(s)	1265, 2108
Hsp92II	CATG	9 cut(s)	538, 556, 899, 1406, 1675, 1742, 1916, 1951, 1969
HspAI	GCGC	4 cut(s)	297, 482, 879, 944
Ksp22I	TGATCA	1 cut(s)	1540
Kzo9I	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
LmnI	GCTCC	4 cut(s)	183, 304, 406, 1255
Lsp1109I	GCAGC	3 cut(s)	512, 916, 1075
LweI	GCATC	5 cut(s)	634, 1075, 1431, 1561, 1618
MaeI	CTAG	2 cut(s)	1082, 1610
MaeII	ACGT	2 cut(s)	1265, 2108
MaeIII	GTNAC	7 cut(s)	101, 844, 1261, 1366, 1471, 1786, 1891
MalI	GATC	6 cut(s)	727, 1234, 1455, 1542, 1595, 2175
MboI	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
MfeI	CAATTG	1 cut(s)	1270
MhlI	GDGCHC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
MluCI	AATT	9 cut(s)	317, 774, 794, 839, 1270, 2020, 2143, 2165, 2220
MlyI	GAGTC	2 cut(s)	768, 1404
MmeI	TCCRAC	2 cut(s)	205, 267
MspA1I	CMGCKG	2 cut(s)	2345, 2375
MspCI	CTTAAG	1 cut(s)	1813
MspI	CCGG	5 cut(s)	146, 691, 708, 1145, 1614
MspR9I	CCNGG	5 cut(s)	147, 395, 521, 692, 709
MunI	CAATTG	1 cut(s)	1270
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	395, 521
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	6 cut(s)	294, 395, 415, 448, 926, 1929
NciI	CCSGG	3 cut(s)	147, 692, 709
NcoI	CCATGG	1 cut(s)	1671
NdeII	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
NlaIII	CATG	9 cut(s)	538, 556, 899, 1406, 1675, 1742, 1916, 1951, 1969
NlaIV	GGNNCC	1 cut(s)	518
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	5 cut(s)	101, 844, 1366, 1786, 1891
PagI	TCATGA	1 cut(s)	1738
PasI	CCCWGGG	1 cut(s)	520
PceI	AGGCCT	2 cut(s)	2130, 2192
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	5 cut(s)	572, 1030, 1735, 1909, 1953
PkrI	GCNGC	7 cut(s)	290, 499, 502, 931, 1090, 2314, 2374
PleI	GAGTC	2 cut(s)	767, 1404
PpsI	GAGTC	2 cut(s)	767, 1404
Ppu21I	YACGTR	1 cut(s)	1266
PshBI	ATTAAT	2 cut(s)	1056, 1701
Psp124BI	GAGCTC	2 cut(s)	411, 1326
Psp1406I	AACGTT	1 cut(s)	2108
Psp6I	CCWGG	2 cut(s)	393, 519
PspEI	GGTNACC	1 cut(s)	1366
PspFI	CCCAGC	2 cut(s)	1661, 1823
PspGI	CCWGG	2 cut(s)	393, 519
PspN4I	GGNNCC	1 cut(s)	518
PspPI	GGNCC	1 cut(s)	516
RsaI	GTAC	3 cut(s)	1268, 1851, 1903
RsaNI	GTAC	3 cut(s)	1267, 1850, 1902
SacI	GAGCTC	2 cut(s)	411, 1326
SatI	GCNGC	7 cut(s)	289, 498, 501, 930, 1089, 2313, 2373
Sau3AI	GATC	6 cut(s)	725, 1232, 1453, 1540, 1593, 2173
Sau96I	GGNCC	1 cut(s)	516
ScaI	AGTACT	1 cut(s)	1851
SchI	GAGTC	2 cut(s)	768, 1404
ScrFI	CCNGG	5 cut(s)	147, 395, 521, 692, 709
SduI	GDGCHC	6 cut(s)	180, 411, 660, 1252, 1326, 1843
SfaNI	GCATC	5 cut(s)	634, 1075, 1431, 1561, 1618
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	516
SmlI	CTYRAG	2 cut(s)	1424, 1813
SmoI	CTYRAG	2 cut(s)	1424, 1813
SnaBI	TACGTA	1 cut(s)	1266
Sse9I	AATT	9 cut(s)	317, 774, 794, 839, 1270, 2020, 2143, 2165, 2220
SseBI	AGGCCT	2 cut(s)	2130, 2192
SsiI	CCGC	9 cut(s)	289, 387, 472, 498, 1190, 1355, 2312, 2343, 2373
SspI	AATATT	1 cut(s)	1516
SspMI	CTAG	2 cut(s)	1082, 1610
SstI	GAGCTC	2 cut(s)	411, 1326
StuI	AGGCCT	2 cut(s)	2130, 2192
StyD4I	CCNGG	5 cut(s)	145, 393, 519, 690, 707
StyI	CCWWGG	2 cut(s)	1092, 1671
TaaI	ACNGT	5 cut(s)	8, 850, 1261, 1888, 1999
TaiI	ACGT	2 cut(s)	1268, 2111
TaqI	TCGA	6 cut(s)	324, 431, 570, 660, 791, 2176
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	9 cut(s)	317, 774, 794, 839, 1270, 2020, 2143, 2165, 2220
TatI	WGTACW	1 cut(s)	1849
TauI	GCSGC	4 cut(s)	291, 500, 2315, 2375
TfiI	GAWTC	5 cut(s)	572, 1030, 1735, 1909, 1953
TscAI	CASTG	5 cut(s)	654, 769, 1423, 1592, 1891
TseFI	GTSAC	5 cut(s)	101, 844, 1366, 1786, 1891
TseI	GCWGC	3 cut(s)	500, 929, 1088
Tsp45I	GTSAC	5 cut(s)	101, 844, 1366, 1786, 1891
TspDTI	ATGAA	8 cut(s)	17, 154, 249, 579, 1352, 1727, 1901, 2090
TspGWI	ACGGA	4 cut(s)	259, 291, 2272, 2375
TspRI	CASTG	5 cut(s)	654, 769, 1423, 1592, 1891
Vha464I	CTTAAG	1 cut(s)	1813
VneI	GTGCAC	1 cut(s)	1839
VpaK11BI	GGWCC	1 cut(s)	516
VspI	ATTAAT	2 cut(s)	1056, 1701
XapI	RAATTY	4 cut(s)	317, 794, 2020, 2220
XspI	CTAG	2 cut(s)	1082, 1610
ZrmI	AGTACT	1 cut(s)	1851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.