Rmu_sc0001062.1_g000004

Pentatricopeptide repeat-containing protein At3g61520

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001062.1
Physical Location & Seq
Reverse (-)
14093 .. 16680
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001062.1_g000004.1.cds

Sequence Viewer

Length: 1743 bp
atgattgggatgttgctgaagattgggcgagtggatgatgcactgaaggtgctcgacaaaatgcttcacccagaagcgaagtttcgggttgatgattttaccggcgatgttgtgattggctcgttgctgaggagagagcagatagggaggagtgtcaatgaggaagaaattgtggagttggcgtcgaaatttggtaagcattgtgtgtttcctaatagcacgatacttacgaaattggtcaatgttttttgtatgaataggaaggttggtattgcttgggatgttttgcataatgtcatgaagatgggtggtgctgtagaagctgctccctgtaatgcgcttttgacggctttgggaagaggtaatgattttaagaggatgagtgaggttttggcgaagatggaaaacatgggcattaagcccgatgttataacttttggtattcttattaatcggttatgcaagtctaggagaatagatgttgccttggaggtgtttgaaaagatgagcggaggagtaaagggggtttcggctgaaccagatgtgatcatctataacaatctgattgatggactttgtaaagtgggaaggctagaagaaggattgtgtttgatggaaatgatgagatcgcaaggtggcagtgcttctaataatgttacctacaattgtttgattgatggtttcaacaaatttggggacactgacaggggccgtgagctctttgataaaatgaaggaggaagggataccactaaatgcggccacccttaatactttacttgatggtctgtgcaggcatgggagactcaacactgcatttgagttctttaatgaaatgcagagggatggtctgaaaggcaatgctgtcacttacacaatcttaatcacttccttttgtaatgtgaacaatattagcaaggcaatggagttgtttaatcagatgttgagggctgaatgtcccacagatgcaatagtttaccactgcttgatctctggtttaagtcaagctggaaggatggaggatgccaattttgttgtctccaagttgaaggaggctggtttctccatggatatcgtttcctacaacgtaatgattaatgggttctccagtaaaaataagcctgataagattcatgagatgattaaggaaatggaggcgtctggagtgaagcctgatagcgtaacatacaacaccttacttgccaacttaagcaaagctggggacttcaaaagcgcacataaagtacttgataggatgatggatgagggtattgttcccactgttgtcacttttggtacattgattcatgcacattgcttggatagcgatattgacaaagccatgagaatcttcagagacattggttctaagttaaagataccttcgaatactgtaatatacaatgatttaataaattctctctgcaagaagaatgatgtggaacaagctctttatttgatggaggaaatgaaggtgaaggggaaaatcgccgcctgcaaggttgttgagtctggcatgatcttccacctcggctccggctccaccgttaaacacaccgtggatcgcttgggcgagcttttacaacagggaaaagtccacaacatcatcggaatttccgagaacacccagcaacaggtcatctctcttagaattccattctccaacctcgatgactacccgatcctcaatctcgctatcaacggtgccgacgaggtggatccccaacctagtcatctcttttag

Protein Analysis

580

Amino Acids

64.16

Weight (kDa)

6.27

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 1703
AccBSI CCGCTC 1 cut(s) 510
AciI CCGC 3 cut(s) 510, 758, 1491
AclWI GGATC 4 cut(s) 1569, 1675, 1712, 1725
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 5 cut(s) 188, 689, 1414, 1611, 1650
AcuI CTGAAG 3 cut(s) 38, 65, 1336
AcyI GRCGYC 2 cut(s) 182, 1157
AdeI CACNNNGTG 1 cut(s) 1558
AfaI GTAC 2 cut(s) 1245, 1297
AfiI CCNNNNNNNGG 1 cut(s) 1633
AflII CTTAAG 1 cut(s) 1207
AgsI TTSAA 4 cut(s) 500, 685, 1048, 1228
AluBI AGCT 6 cut(s) 323, 718, 1007, 1217, 1448, 1576
AluI AGCT 6 cut(s) 323, 718, 1007, 1217, 1448, 1576
Alw21I GWGCWC 2 cut(s) 54, 720
Alw26I GTCTC 3 cut(s) 796, 1042, 1350
AlwI GGATC 4 cut(s) 1569, 1675, 1712, 1725
AoxI GGCC 2 cut(s) 709, 759
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 5 cut(s) 188, 689, 1414, 1611, 1650
AseI ATTAAT 2 cut(s) 450, 1095
AspLEI GCGC 2 cut(s) 340, 1235
AspS9I GGNCC 1 cut(s) 709
AsuHPI GGTGA 2 cut(s) 59, 1486
AsuII TTCGAA 1 cut(s) 1385
BamHI GGATCC 1 cut(s) 1717
BanI GGYRCC 1 cut(s) 1703
BanII GRGCYC 1 cut(s) 720
Bbv12I GWGCWC 2 cut(s) 54, 720
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 310
BceAI ACGGC 2 cut(s) 363, 696
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 1 cut(s) 546
BcoDI GTCTC 3 cut(s) 796, 1042, 1350
BfaI CTAG 3 cut(s) 468, 593, 1728
BfmI CTRYAG 1 cut(s) 315
BfrI CTTAAG 1 cut(s) 1207
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 3 cut(s) 324, 759, 1491
BlsI GCNGC 3 cut(s) 325, 760, 1492
BmcAI AGTACT 1 cut(s) 1245
BmgT120I GGNCC 1 cut(s) 709
BmiI GGNNCC 5 cut(s) 710, 1534, 1540, 1705, 1719
BmsI GCATC 3 cut(s) 28, 955, 1012
BpmI CTGGAG 2 cut(s) 1090, 1182
Bpu10I CCTNAGC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 1385
BsaHI GRCGYC 2 cut(s) 182, 1157
BsaJI CCNNGG 4 cut(s) 486, 1065, 1528, 1557
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 1517, 1547
Bsc4I CCNNNNNNNGG 1 cut(s) 1633
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 1107
Bse3DI GCAATG 3 cut(s) 865, 927, 1312
BseDI CCNNGG 4 cut(s) 486, 1065, 1528, 1557
BseGI GGATG 9 cut(s) 15, 40, 286, 384, 850, 1020, 1027, 1260, 1267
BseLI CCNNNNNNNGG 1 cut(s) 1633
BseMI GCAATG 3 cut(s) 865, 927, 1312
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 1107
BseRI GAGGAG 3 cut(s) 145, 163, 528
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 2 cut(s) 1217, 1626
BsgI GTGCAG 1 cut(s) 811
BshFI GGCC 2 cut(s) 711, 761
BshNI GGYRCC 1 cut(s) 1703
BsiHKAI GWGCWC 2 cut(s) 54, 720
BsiSI CCGG 2 cut(s) 102, 1536
BslFI GGGAC 3 cut(s) 710, 942, 1235
BslI CCNNNNNNNGG 1 cut(s) 1633
BsmAI GTCTC 3 cut(s) 796, 1042, 1350
BsmFI GGGAC 3 cut(s) 710, 942, 1235
BsnI GGCC 2 cut(s) 711, 761
Bsp119I TTCGAA 1 cut(s) 1385
Bsp1286I GDGCHC 2 cut(s) 54, 720
Bsp143I GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
Bsp19I CCATGG 1 cut(s) 1065
BspACI CCGC 3 cut(s) 510, 758, 1491
BspANI GGCC 2 cut(s) 711, 761
BspCNI CTCAG 1 cut(s) 120
BspHI TCATGA 2 cut(s) 297, 1132
BspLI GGNNCC 5 cut(s) 710, 1534, 1540, 1705, 1719
BspPI GGATC 4 cut(s) 1569, 1675, 1712, 1725
BspT104I TTCGAA 1 cut(s) 1385
BspT107I GGYRCC 1 cut(s) 1703
BspTI CTTAAG 1 cut(s) 1207
BsrBI CCGCTC 1 cut(s) 510
BsrDI GCAATG 3 cut(s) 865, 927, 1312
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 1107
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 486, 1065, 1528, 1557
BssMI GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
BssNI GRCGYC 2 cut(s) 182, 1157
BssT1I CCWWGG 2 cut(s) 486, 1065
Bst4CI ACNGT 5 cut(s) 1282, 1393, 1546, 1558, 1703
Bst6I CTCTTC 1 cut(s) 352
BstACI GRCGYC 2 cut(s) 182, 1157
BstAFI CTTAAG 1 cut(s) 1207
BstBI TTCGAA 1 cut(s) 1385
BstC8I GCNNGC 3 cut(s) 794, 1495, 1574
BstDEI CTNAG 3 cut(s) 128, 1368, 1646
BstDSI CCRYGG 2 cut(s) 1065, 1557
BstF5I GGATG 9 cut(s) 15, 40, 286, 384, 850, 1020, 1027, 1260, 1267
BstHHI GCGC 2 cut(s) 340, 1235
BstKTI GATC 7 cut(s) 549, 629, 990, 1521, 1564, 1683, 1720
BstMAI GTCTC 3 cut(s) 796, 1042, 1350
BstMBI GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
BstMWI GCNNNNNNNGC 2 cut(s) 320, 1323
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 1717
BstYI RGATCY 1 cut(s) 1717
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 2 cut(s) 711, 761
BtgI CCRYGG 2 cut(s) 1065, 1557
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 9 cut(s) 15, 40, 286, 384, 850, 1020, 1027, 1260, 1267
BtsI GCAGTG 3 cut(s) 646, 810, 979
BtsIMutI CAGTG 6 cut(s) 41, 646, 699, 810, 979, 1278
Cac8I GCNNGC 3 cut(s) 794, 1495, 1574
CciI TCATGA 2 cut(s) 297, 1132
CfoI GCGC 2 cut(s) 340, 1235
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 709
CseI GACGC 2 cut(s) 171, 1146
Csp6I GTAC 2 cut(s) 1244, 1296
CviAII CATG 8 cut(s) 298, 409, 797, 1066, 1133, 1307, 1342, 1516
CviQI GTAC 2 cut(s) 1244, 1296
DdeI CTNAG 3 cut(s) 128, 1368, 1646
DpnI GATC 7 cut(s) 548, 628, 989, 1520, 1563, 1682, 1719
DpnII GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
DraIII CACNNNGTG 1 cut(s) 1558
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 718
Eco130I CCWWGG 2 cut(s) 486, 1065
Eco24I GRGCYC 1 cut(s) 720
Eco32I GATATC 1 cut(s) 1072
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 3 cut(s) 38, 65, 1336
EcoICRI GAGCTC 1 cut(s) 718
EcoRI GAATTC 1 cut(s) 1650
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 2 cut(s) 486, 1065
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 2 cut(s) 486, 1065
FaeI CATG 8 cut(s) 301, 412, 800, 1069, 1136, 1310, 1345, 1519
FaqI GGGAC 3 cut(s) 710, 942, 1235
FatI CATG 8 cut(s) 297, 408, 796, 1065, 1132, 1306, 1341, 1515
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 324, 759, 1491
FokI GGATG 9 cut(s) 22, 47, 293, 391, 857, 1027, 1034, 1267, 1274
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 3 cut(s) 324, 759, 1491
FspBI CTAG 3 cut(s) 468, 593, 1728
GlaI GCGC 2 cut(s) 339, 1234
GluI GCNGC 3 cut(s) 324, 759, 1491
GsaI CCCAGC 2 cut(s) 1221, 1630
GsuI CTGGAG 2 cut(s) 1090, 1182
HaeIII GGCC 2 cut(s) 711, 761
HapII CCGG 2 cut(s) 102, 1536
HgaI GACGC 2 cut(s) 171, 1146
HhaI GCGC 2 cut(s) 340, 1235
Hin1I GRCGYC 2 cut(s) 182, 1157
Hin1II CATG 8 cut(s) 301, 412, 800, 1069, 1136, 1310, 1345, 1519
Hin6I GCGC 2 cut(s) 338, 1233
HinP1I GCGC 2 cut(s) 338, 1233
HinfI GANTC 5 cut(s) 804, 1129, 1303, 1347, 1508
HpaII CCGG 2 cut(s) 102, 1536
HphI GGTGA 2 cut(s) 59, 1486
Hpy166II GTNNAC 3 cut(s) 904, 976, 1597
Hpy188I TCNGA 6 cut(s) 564, 852, 939, 1355, 1610, 1618
Hpy188III TCNNGA 3 cut(s) 298, 1133, 1161
Hpy8I GTNNAC 3 cut(s) 904, 976, 1597
Hpy99I CGWCG 2 cut(s) 187, 1712
HpyCH4III ACNGT 5 cut(s) 1282, 1393, 1546, 1558, 1703
HpyCH4IV ACGT 1 cut(s) 1086
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 1323
HpyF3I CTNAG 3 cut(s) 128, 1368, 1646
HpySE526I ACGT 1 cut(s) 1086
Hsp92I GRCGYC 2 cut(s) 182, 1157
Hsp92II CATG 8 cut(s) 301, 412, 800, 1069, 1136, 1310, 1345, 1519
HspAI GCGC 2 cut(s) 338, 1233
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
LmnI GCTCC 3 cut(s) 331, 1538, 1544
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 3 cut(s) 28, 955, 1012
MaeI CTAG 3 cut(s) 468, 593, 1728
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 4 cut(s) 655, 865, 1180, 1285
MalI GATC 7 cut(s) 548, 628, 989, 1520, 1563, 1682, 1719
MbiI CCGCTC 1 cut(s) 510
MboI GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
MboII GAAGA 9 cut(s) 31, 176, 313, 369, 409, 608, 1342, 1441, 1513
MfeI CAATTG 1 cut(s) 664
MflI RGATCY 1 cut(s) 1717
MhlI GDGCHC 2 cut(s) 54, 720
MluCI AATT 9 cut(s) 168, 188, 233, 664, 689, 1027, 1414, 1611, 1650
MlyI GAGTC 2 cut(s) 798, 1517
MmeI TCCRAC 1 cut(s) 1686
MslI CAYNNNNRTG 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 1207
MspI CCGG 2 cut(s) 102, 1536
MunI CAATTG 1 cut(s) 664
MwoI GCNNNNNNNGC 2 cut(s) 320, 1323
NcoI CCATGG 1 cut(s) 1065
NdeII GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
NlaIII CATG 8 cut(s) 301, 412, 800, 1069, 1136, 1310, 1345, 1519
NlaIV GGNNCC 5 cut(s) 710, 1534, 1540, 1705, 1719
NmeAIII GCCGAG 1 cut(s) 1509
NmuCI GTSAC 2 cut(s) 865, 1285
NspV TTCGAA 1 cut(s) 1385
PagI TCATGA 2 cut(s) 297, 1132
PcsI WCGNNNNNNNCGW 3 cut(s) 227, 1614, 1707
PfeI GAWTC 3 cut(s) 1129, 1303, 1347
PkrI GCNGC 3 cut(s) 325, 760, 1492
PleI GAGTC 2 cut(s) 798, 1516
PpsI GAGTC 2 cut(s) 798, 1516
PshBI ATTAAT 2 cut(s) 450, 1095
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 720
PspFI CCCAGC 2 cut(s) 1217, 1626
PspN4I GGNNCC 5 cut(s) 710, 1534, 1540, 1705, 1719
PspPI GGNCC 1 cut(s) 709
PsuI RGATCY 1 cut(s) 1717
RsaI GTAC 2 cut(s) 1245, 1297
RsaNI GTAC 2 cut(s) 1244, 1296
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 720
SatI GCNGC 3 cut(s) 324, 759, 1491
Sau3AI GATC 7 cut(s) 546, 626, 987, 1518, 1561, 1680, 1717
Sau96I GGNCC 1 cut(s) 709
ScaI AGTACT 1 cut(s) 1245
SchI GAGTC 2 cut(s) 798, 1517
SduI GDGCHC 2 cut(s) 54, 720
SfaNI GCATC 3 cut(s) 28, 955, 1012
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 1385
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 1207
SmoI CTYRAG 1 cut(s) 1207
Sse9I AATT 9 cut(s) 168, 188, 233, 664, 689, 1027, 1414, 1611, 1650
SsiI CCGC 3 cut(s) 510, 758, 1491
SspI AATATT 1 cut(s) 910
SspMI CTAG 3 cut(s) 468, 593, 1728
SstI GAGCTC 1 cut(s) 720
StyI CCWWGG 2 cut(s) 486, 1065
TaaI ACNGT 5 cut(s) 1282, 1393, 1546, 1558, 1703
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 4 cut(s) 54, 185, 1385, 1668
TasI AATT 9 cut(s) 168, 188, 233, 664, 689, 1027, 1414, 1611, 1650
TatI WGTACW 1 cut(s) 1243
TauI GCSGC 2 cut(s) 761, 1493
TfiI GAWTC 3 cut(s) 1129, 1303, 1347
TscAI CASTG 6 cut(s) 48, 646, 706, 817, 986, 1285
TseFI GTSAC 2 cut(s) 865, 1285
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 865, 1285
TspDTI ATGAA 7 cut(s) 269, 314, 746, 846, 1121, 1295, 1484
TspRI CASTG 6 cut(s) 48, 646, 706, 817, 986, 1285
Vha464I CTTAAG 1 cut(s) 1207
VspI ATTAAT 2 cut(s) 450, 1095
XapI RAATTY 5 cut(s) 188, 689, 1414, 1611, 1650
XspI CTAG 3 cut(s) 468, 593, 1728
ZrmI AGTACT 1 cut(s) 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.