Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003490.1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

82756 .. 83031

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003490.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atggcgaagcgaaccaaccacctctgcaccaatcccaatttcgatccgaaccaaccaccccaagatgacgattccctcataacccaagtcttccaactcctccgacccaatgagaaagactggaactttgaccaacaccacaccctcctcttccccaactcaacctctccttctctttgctcccttttcctcatcactcgccgccttggcgctccctccaaagccctcaaattcttcgattacgtctctgaaaacgtggccggaacccctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

91

Amino Acids

10.36

Weight (kDa)

6.24

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	2 cut(s)	89, 137
BsgI	GTGCAG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	212
CviAII	CATG	1 cut(s)	273
CviJI	RGCY	2 cut(s)	224, 260
CviKI_1	RGCY	2 cut(s)	224, 260
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	276
FaiI	YATR	2 cut(s)	80, 274
FatI	CATG	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	202
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	261
Hpy188I	TCNGA	3 cut(s)	48, 104, 250
HpyAV	CCTTC	1 cut(s)	180
HpyCH4IV	ACGT	2 cut(s)	243, 255
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	243, 255
Hsp92II	CATG	1 cut(s)	276
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	185, 217
LpnPI	CCDG	1 cut(s)	106
MaeII	ACGT	2 cut(s)	243, 255
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	82, 142, 226
MluCI	AATT	2 cut(s)	37, 230
MmeI	TCCRAC	2 cut(s)	118, 127
MnlI	CCTC	9 cut(s)	32, 86, 110, 155, 158, 175, 200, 226, 236
MspI	CCGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	276
NlaIV	GGNNCC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	265
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	1 cut(s)	43
SetI	ASST	4 cut(s)	24, 167, 246, 258
SgeI	CNNG	6 cut(s)	74, 98, 133, 210, 218, 268
Sse9I	AATT	2 cut(s)	37, 230
SsiI	CCGC	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	205
TaiI	ACGT	2 cut(s)	246, 258
TaqI	TCGA	2 cut(s)	42, 237
TasI	AATT	2 cut(s)	37, 230
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.