Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003490.1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

81922 .. 82746

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003490.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ctgctctcctccgcattccaggctcttctggagctcacattgcaggagcccacctcggaaaagaagctctttgagctttacaagatggccaaggaccggaatgtctcgctgaatctcaaggccgcaggtctgcttgttcggtccatgggcgccactgggatggaagacgaggctctcacagtgtttaacgagcttcatttggggttgaaaactactcatattcacaatgtgatgattgggttgttgctaaagattgggcgagtagatgatgcactgaaggtgctcgacgaaatgcttcacccagaagcgaagtttcgggttgatgactttaccggcgatgttgtgatcggctcattattgaggagagagcagatagggaggagtgtcagtgaggaagaaattgtggagttggtgtcaaaatttggtaagcatggtgtgtttcctaataacacaatacttacgaaattggtcactgttttgtgtaggaataggaaggttggtattgcttgggatgttttacatgatgtcatgaagatgggtggtgctgtagaagctgcttcgtgcaatgcgcttttgacagctttgggaagagctaatgattttaagaggatgagtgagcttatggcgaagatggaagagatgggcattaagcccgatgttataacttttggtattcttattaatcggttatgtaagtctaggagaatagatgctgccttggaggtgtttgaaaagatgagtggacgggtaaagggggtttctgctgaaccagatgtgatcatctataacactctgattgatggactttgcaaagtgggaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

274

Amino Acids

30.28

Weight (kDa)

7.83

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
AasI	GACNNNNNNGTC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	2 cut(s)	12, 123
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	208, 731
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	8 cut(s)	34, 67, 76, 193, 554, 581, 593, 619
AluI	AGCT	8 cut(s)	34, 67, 76, 193, 554, 581, 593, 619
Alw21I	GWGCWC	2 cut(s)	36, 285
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	2 cut(s)	87, 120
ApeKI	GCWGC	2 cut(s)	554, 713
ApoI	RAATTY	1 cut(s)	419
AseI	ATTAAT	1 cut(s)	681
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	152, 571
AspS9I	GGNCC	2 cut(s)	94, 141
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	94, 141
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	36, 51
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	36, 285
BbvI	GCAGC	2 cut(s)	541, 700
BccI	CCATC	6 cut(s)	79, 154, 529, 625, 634, 794
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	123, 555, 714
BlsI	GCNGC	3 cut(s)	124, 556, 715
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	2 cut(s)	94, 141
BmgT120I	GGNCC	2 cut(s)	94, 141
BmiI	GGNNCC	2 cut(s)	48, 151
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	2 cut(s)	259, 700
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	54, 90, 144, 717
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 398, 403, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	38, 571
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	4 cut(s)	54, 90, 144, 717
BseGI	GGATG	3 cut(s)	165, 517, 615
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	2 cut(s)	38, 571
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	2 cut(s)	376, 394
BseXI	GCAGC	2 cut(s)	541, 700
BshFI	GGCC	2 cut(s)	89, 122
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	36, 285
BsiSI	CCGG	2 cut(s)	97, 333
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	89, 122
Bsp1286I	GDGCHC	3 cut(s)	36, 51, 285
Bsp143I	GATC	2 cut(s)	345, 777
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	12, 123
BspANI	GGCC	2 cut(s)	89, 122
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	2 cut(s)	48, 151
BspMI	ACCTGC	1 cut(s)	116
BspQI	GCTCTTC	2 cut(s)	30, 583
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	38, 571
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	4 cut(s)	54, 90, 144, 717
BssMI	GATC	2 cut(s)	345, 777
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	90, 144, 717
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	181, 475
Bst6I	CTCTTC	3 cut(s)	30, 583, 630
BstACI	GRCGYC	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	165, 517, 615
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 571
BstKTI	GATC	2 cut(s)	348, 780
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	345, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 40, 73, 551
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	541, 700
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	89, 122
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	165, 517, 615
BtsIMutI	CAGTG	5 cut(s)	153, 186, 272, 394, 471
BveI	ACCTGC	1 cut(s)	116
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	2 cut(s)	152, 571
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	94, 141
CviAII	CATG	4 cut(s)	145, 431, 521, 529
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	2 cut(s)	347, 779
DpnII	GATC	2 cut(s)	345, 777
DraIII	CACNNNGTG	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	30, 583, 630
EarI	CTCTTC	3 cut(s)	30, 583, 630
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	3 cut(s)	90, 144, 717
Eco24I	GRGCYC	2 cut(s)	36, 51
Eco47I	GGWCC	2 cut(s)	94, 141
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	3 cut(s)	90, 144, 717
EcoT38I	GRGCYC	2 cut(s)	36, 51
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	3 cut(s)	90, 144, 717
FaeI	CATG	4 cut(s)	148, 434, 524, 532
FaiI	YATR	9 cut(s)	146, 219, 432, 522, 530, 623, 662, 691, 786
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	4 cut(s)	144, 430, 520, 528
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	3 cut(s)	123, 555, 714
FokI	GGATG	3 cut(s)	172, 524, 622
FriOI	GRGCYC	2 cut(s)	36, 51
Fsp4HI	GCNGC	3 cut(s)	123, 555, 714
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	2 cut(s)	151, 570
GluI	GCNGC	3 cut(s)	123, 555, 714
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	89, 122
HapII	CCGG	2 cut(s)	97, 333
HhaI	GCGC	2 cut(s)	152, 571
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	148, 434, 524, 532
Hin6I	GCGC	2 cut(s)	150, 569
HinP1I	GCGC	2 cut(s)	150, 569
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	2 cut(s)	97, 333
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	2 cut(s)	58, 795
Hpy188III	TCNNGA	2 cut(s)	29, 529
Hpy8I	GTNNAC	1 cut(s)	743
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	271, 487
HpyCH4III	ACNGT	2 cut(s)	181, 475
HpyCH4V	TGCA	4 cut(s)	43, 272, 564, 810
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 40, 73, 551
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	148, 434, 524, 532
HspAI	GCGC	2 cut(s)	150, 569
KasI	GGCGCC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	2 cut(s)	345, 777
LguI	GCTCTTC	2 cut(s)	30, 583
LmnI	GCTCC	2 cut(s)	31, 46
Lsp1109I	GCAGC	2 cut(s)	541, 700
LweI	GCATC	2 cut(s)	259, 700
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	2 cut(s)	347, 779
MboI	GATC	2 cut(s)	345, 777
MboII	GAAGA	7 cut(s)	17, 176, 407, 544, 600, 640, 647
MhlI	GDGCHC	3 cut(s)	36, 51, 285
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	3 cut(s)	399, 419, 464
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	19, 64, 163, 354, 372, 385, 600, 715
Mox20I	TGGCCA	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	4 cut(s)	186, 603, 648, 681
MslI	CAYNNNNRTG	2 cut(s)	158, 533
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	2 cut(s)	97, 333
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	20, 40, 73, 551
NarI	GGCGCC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	345, 777
NlaIII	CATG	4 cut(s)	148, 434, 524, 532
NlaIV	GGNNCC	2 cut(s)	48, 151
NmuCI	GTSAC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	528
PciSI	GCTCTTC	2 cut(s)	30, 583
PctI	GAATGC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	124, 556, 715
PluTI	GGCGCC	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	662
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	48, 151
PspPI	GGNCC	2 cut(s)	94, 141
RseI	CAYNNNNRTG	2 cut(s)	158, 533
SacI	GAGCTC	1 cut(s)	36
SapI	GCTCTTC	2 cut(s)	30, 583
SaqAI	TTAA	4 cut(s)	186, 603, 648, 681
SatI	GCNGC	3 cut(s)	123, 555, 714
Sau3AI	GATC	2 cut(s)	345, 777
Sau96I	GGNCC	2 cut(s)	94, 141
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	3 cut(s)	36, 51, 285
SfaNI	GCATC	2 cut(s)	259, 700
SfcI	CTRYAG	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	151
SinI	GGWCC	2 cut(s)	94, 141
SmiMI	CAYNNNNRTG	2 cut(s)	158, 533
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	399, 419, 464
SsiI	CCGC	2 cut(s)	12, 123
SspDI	GGCGCC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	699
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	3 cut(s)	90, 144, 717
TaaI	ACNGT	2 cut(s)	181, 475
TaqI	TCGA	1 cut(s)	285
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	399, 419, 464
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	4 cut(s)	186, 603, 648, 681
Tru9I	TTAA	4 cut(s)	186, 603, 648, 681
TscAI	CASTG	5 cut(s)	160, 186, 279, 394, 478
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	554, 713
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	185, 545
TspRI	CASTG	5 cut(s)	160, 186, 279, 394, 478
VpaK11BI	GGWCC	2 cut(s)	94, 141
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.