Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Reverse (-)

1804693 .. 1808757

Gene Structure 4065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03011.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2964 bp

ATGAAGAGTTCAAAACCCCTCCTCCACCTCCTTAAACCCCAAACCCCCAAATCCAACTCTCCCTTCTTCCTCCTCACTCACCACCTCTGCACCAATCCCATCTCCAATCCCAACGACGAGGACTCCATCATAACCCAAGTCCTCCAAGTCCTCCAAGTCCTCCAACCCAATGAGCAACACTGGAACTTCCCCCAACTCCACACCCTCCTCTTCCCCAGCTCCACCTCCTCCCCTTCACCCCGCACCCTCCTCCACATCACCCGCTGCCTCGCCTCCCCCACCAAAGCCCTCAAATTCTTCGATTTCGTCTCCCAGAATCTCACCCCTCAGGACCCTCCAAAGGCCGTGCTCTCCTCCTCATTCGAGGCCCTTGTGGAGCTCACATTGCGACAGCCCCCCTCCGAAACGAACCTTTATGAGCTCTACAAGATGGCCAAGGATCGAAACGTTCCGATTAGTCCCAAGGCCGTGCGGCTGCTTGTTCAGTCCATGAGGAGGGCTGGGATGGAGGAGGAGGCTTTATTAGTGTTTAATGAACTCGATTCGGCGTTGAAGACTACATTTATTCGCAATGAGGCGATTGGGTTGTTGCTGAAAATGGGGCGTGTTGATGATGCACTGAAGGTGCTCGACGAAATGCTTGACCCAGAAGCAAAGTTCCAGGTTGATGATTTTACTGTTGGCTTGTTTTTGAGCGGAGAGATTCGAGGGAGGAGTGTAAGTGAGGAGGAAATTGTGGAGTTTGTATCAAAATTTGGTGAGCGTGTTGTGTTTCCTAATAGTGTGGTACTTACAAAATTGGTGAGTGGTTTGTGTAGGAACAGGAAGGTTGGTCTTGCTTGGGATGTTTTGCATGATGTCATGAAGAAGGGTGGTGCTTTAGAGGCTGCTCCGTGCAATGCGCTGTTGTCGGCTTTGGGGAGAGGGAATGAGTTTGAGAGGATGAGGGAGCTTATGGCGAAGATGGAAGAGATGGGGATTAAGCCCGATGTTATAACTTTTGGTATTCTTATTAATCGGTTATGCAAGTCTAGGAGAATAGATGCTGCCATGGAGGTGTTTGAAAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGTTGAACCAGGTGTGGTCATCTATAGCACTCTGATTGATGGACTTTGTAAAGTGGGAAGGCAAGAAGAAGGTTTGCGTTTGATGGAAAAGATGAGATCTCAAAGTGGCTGTGCTCCTGATACTGTCACCTATAATATTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAAGGGCCGTGAGCTCTTTGATAAAATGAAGGAAGAAGGGATACCAATGGATGTCTCCATCCTCAATACTATGCTTGATGGTCTGTCCAGGCGTGGGAGCGGAGAGATTCGAGGGAGGAGTGTAAGTGAGGAGGAAATTGTGGAGTTGGTATCAAAATTAGGTGAGCGTGGTGTGTTTCCTAATAGTGTGGTACTTACAAAATTGGTGAGTGGTTTGTGTAGGAACAGGAAGGTTGGTCTTGCTTGGGATGTTTTGCATGATGTCATGAAGAAGGGTGGTGCTTTAGAGGCTGCTCCGTGCAATGCGCTGTTGTCGGCTTTGGGGAGAGGGAATGAGTTTGAGAGGATGAGGGAGCTTATGGCGAAGATGGAAGAGATGGGGATTAAGCCCGATGTTATAACTTTTGGTATTCTTATTAATCGGTTATGCCAGTCTAGGAGAATAGATGCTGCCATGGAGGTGTTTGAAAAGATGAGTGGAGGAGTAAAGGGGGTTTCGGTTGAACCAGATGTGGGCATCTATAGCACTCTGATTGATGGACTTTGTAAAGTGGGAAGGCAAGAAGAAGGTTTGCGTTTGATGGAAAAGATGAGATCTCAAAGTGGCTGTGCTCCTGATACTGTCACCTATAATATTTTGATTGATGGTTTCAACAAAGTTGGGGACATTGAGAAGGGCCGTGAGCTCTTTGATAAAATGAAGGAAGAAGGGATACCAATGAATGTCTCCACCCTCAATACTATGCTTGATGGTCTGTCCAGGCGTGGGAGACTCAACACTGCACTTGAGTTCTTTAACGAAATGGAGAGGAAAGGTTTGAAAGGCGATTTTGTCACTTACACAATCTTAATCACTTCCTTTTGCAATGTGACCAATATTCACAAGGCAATGGAGTTGTTTGATCAGATGTTGACTGGGTGTCCCACTGATGCAAAAGTTTACCGCCGCTTGATTTCTGGTTTAAGCCAAGCCGGAAGGATGGAGGATGCCAGCTTTGTTGTCTCGAAGTTGAAGGAGGCTGGGTTCTCCATGGATATCGTTTCTTACAATGTGATGATTCATGGGTTCTGCAGTGAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAGGCATCTGGAGTGAAGCCTGATAGCGTAACATACAACACCTTGCTTGCCTACTTAGGCAAACATGGGGACATTGAAAGTGCATATAAAGTATTTGACAGGATGCTGAATGAGGGTGTTGTTCCCACTGTTGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGCGATATCGAAAAAGCCATGAGAATCTTCAGAGACATGGGTTCTAAGTCAAAGATGCCTCCGAATACTGTAATCTACAGTGATTTAATCAATTCTCTTTGCAAGAAGAATGATGTGGAACAAGCTCTTTCTTTGATGGAGGACATGAAGGCTAAGGGGGTGAGACCTGATACCCAAACGTTCAGTGCCCTGTTCAAAGGCCTTAGAGAGAACAATTTATTAAAGAAGGCTTTTCAATTTATGGATCAAATGGTTGAAGAGGACTGTAATCCTGATTATATAACGATGGATATTCTTACCGAATGGCTTCCTGGTGTTGGTGAAACAGAGAGGTTGAGAAAGTTTGCTCAAGGATTTCCGGTTTTGGAGCCTCAGCCCCAACAGAAGGATGGGATAGTCACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

988

Amino Acids

110.08

Weight (kDa)

5.84

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	282 - 403	5.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	299 - 343	1.3e-09	PPR repeat family
PPR_3	PF13812	319 - 378	9.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	325 - 358	1.4e-11	PPR repeat
PPR_1	PF12854	366 - 397	3.6e-08	PPR repeat
PPR_2	PF13041	368 - 417	1.2e-14	PPR repeat family
PPR_1	PF12854	401 - 433	2.3e-10	PPR repeat
PPR_2	PF13041	404 - 452	6.2e-12	PPR repeat family
PPR	PF01535	407 - 437	1.4e-08	PPR repeat
PPR_long	PF17177	506 - 636	2.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	523 - 567	2.8e-09	PPR repeat family
PPR_1	PF12854	549 - 582	3.8e-11	PPR repeat
PPR_1	PF12854	590 - 621	2.2e-08	PPR repeat
PPR_2	PF13041	592 - 641	5e-14	PPR repeat family
TPR_24	PF23276	624 - 725	1.7e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	625 - 657	2.3e-10	PPR repeat
PPR_2	PF13041	628 - 676	6.7e-15	PPR repeat family
PPR	PF01535	631 - 661	1.4e-08	PPR repeat
PPR_1	PF12854	660 - 692	7.2e-08	PPR repeat
PPR_2	PF13041	664 - 712	1.2e-15	PPR repeat family
PPR	PF01535	667 - 696	9.3e-07	PPR repeat
PPR_3	PF13812	688 - 726	9.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	694 - 726	2.2e-09	PPR repeat
PPR_2	PF13041	700 - 745	2.6e-07	PPR repeat family
PPR_2	PF13041	770 - 802	2.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	995, 1667
AccBSI	CCGCTC	2 cut(s)	696, 1368
AciI	CCGC	7 cut(s)	241, 262, 472, 696, 1368, 2212, 2215
AclI	AACGTT	2 cut(s)	447, 2735
AclWI	GGATC	2 cut(s)	447, 2808
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	293, 752
AcuI	CTGAAG	2 cut(s)	641, 2569
AfaI	GTAC	3 cut(s)	789, 1461, 2530
AfiI	CCNNNNNNNGG	7 cut(s)	340, 495, 1362, 1781, 2034, 2873, 2941
AhdI	GACNNNNNGTC	1 cut(s)	2187
AjnI	CCWGG	5 cut(s)	660, 1102, 1355, 2027, 2866
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AloI	GAACNNNNNNTCC	2 cut(s)	2276, 2308
AluBI	AGCT	9 cut(s)	219, 379, 421, 952, 1282, 1624, 1954, 2262, 2681
AluI	AGCT	9 cut(s)	219, 379, 421, 952, 1282, 1624, 1954, 2262, 2681
Alw21I	GWGCWC	8 cut(s)	351, 381, 423, 630, 1210, 1284, 1882, 1956
Alw26I	GTCTC	7 cut(s)	313, 1327, 1999, 2032, 2275, 2583, 2713
AlwI	GGATC	2 cut(s)	447, 2808
AoxI	GGCC	7 cut(s)	342, 366, 432, 465, 1273, 1945, 2755
ApeKI	GCWGC	6 cut(s)	264, 475, 887, 1046, 1559, 1718
ApoI	RAATTY	2 cut(s)	293, 752
AseI	ATTAAT	2 cut(s)	1014, 1686
Asp700I	GAANNNNTTC	1 cut(s)	2862
AspLEI	GCGC	2 cut(s)	904, 1576
AspS9I	GGNCC	4 cut(s)	331, 367, 1273, 1945
AvaII	GGWCC	1 cut(s)	331
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	2746
BalI	TGGCCA	1 cut(s)	434
BanII	GRGCYC	4 cut(s)	381, 423, 1284, 1956
BarI	GAAGNNNNNNTAC	4 cut(s)	1293, 1325, 1965, 1997
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	8 cut(s)	351, 381, 423, 630, 1210, 1284, 1882, 1956
BbvCI	CCTCAGC	1 cut(s)	2928
BbvI	GCAGC	6 cut(s)	251, 462, 874, 1033, 1546, 1705
BceAI	ACGGC	4 cut(s)	329, 452, 1260, 1932
BciT130I	CCWGG	5 cut(s)	662, 1104, 1357, 2029, 2868
BciVI	GTATCC	2 cut(s)	1302, 1974
BclI	TGATCA	1 cut(s)	2170
BcoDI	GTCTC	7 cut(s)	313, 1327, 1999, 2032, 2275, 2583, 2713
BfaI	CTAG	2 cut(s)	1032, 1704
BfmI	CTRYAG	4 cut(s)	1117, 1789, 2338, 2632
BfuI	GTATCC	2 cut(s)	1302, 1974
BglII	AGATCT	2 cut(s)	1190, 1862
BisI	GCNGC	8 cut(s)	265, 473, 476, 888, 1047, 1560, 1719, 2215
BlsI	GCNGC	8 cut(s)	266, 474, 477, 889, 1048, 1561, 1720, 2216
Bme1390I	CCNGG	5 cut(s)	662, 1104, 1357, 2029, 2868
Bme18I	GGWCC	1 cut(s)	331
BmeRI	GACNNNNNGTC	1 cut(s)	2187
BmgT120I	GGNCC	4 cut(s)	331, 367, 1273, 1945
BmiI	GGNNCC	2 cut(s)	333, 2925
BmrFI	CCNGG	5 cut(s)	662, 1104, 1357, 2029, 2868
BmrI	ACTGGG	1 cut(s)	2193
BmsI	GCATC	9 cut(s)	604, 1033, 1705, 1794, 2188, 2245, 2399, 2478, 2601
BmuI	ACTGGG	1 cut(s)	2193
BpiI	GAAGAC	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	2415
Bpu10I	CCTNAGC	2 cut(s)	2709, 2928
BpuEI	CTTGAG	2 cut(s)	2075, 2889
BsaI	GGTCTC	1 cut(s)	2713
BsaJI	CCNNGG	5 cut(s)	435, 462, 1050, 1722, 2298
BsaWI	WCCGGW	1 cut(s)	2914
Bsc4I	CCNNNNNNNGG	7 cut(s)	340, 495, 1362, 1781, 2034, 2873, 2941
Bse1I	ACTGG	3 cut(s)	185, 1699, 2188
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	7 cut(s)	383, 577, 904, 1576, 2140, 2163, 2545
BseBI	CCWGG	5 cut(s)	662, 1104, 1357, 2029, 2868
BseDI	CCNNGG	5 cut(s)	435, 462, 1050, 1722, 2298
BseLI	CCNNNNNNNGG	7 cut(s)	340, 495, 1362, 1781, 2034, 2873, 2941
BseMI	GCAATG	7 cut(s)	383, 577, 904, 1576, 2140, 2163, 2545
BseMII	CTCAG	2 cut(s)	341, 2942
BseNI	ACTGG	3 cut(s)	185, 1699, 2188
BseSI	GKGCMC	1 cut(s)	2746
BseXI	GCAGC	6 cut(s)	251, 462, 874, 1033, 1546, 1705
BseYI	CCCAGC	3 cut(s)	215, 500, 2288
BsgI	GTGCAG	2 cut(s)	73, 2034
BshFI	GGCC	7 cut(s)	344, 368, 434, 467, 1275, 1947, 2757
BsiHKAI	GWGCWC	8 cut(s)	351, 381, 423, 630, 1210, 1284, 1882, 1956
BsiSI	CCGG	2 cut(s)	2241, 2915
BslFI	GGGAC	5 cut(s)	444, 1274, 1946, 2175, 2468
BslI	CCNNNNNNNGG	7 cut(s)	340, 495, 1362, 1781, 2034, 2873, 2941
BsmAI	GTCTC	7 cut(s)	313, 1327, 1999, 2032, 2275, 2583, 2713
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	5 cut(s)	444, 1274, 1946, 2175, 2468
BsnI	GGCC	7 cut(s)	344, 368, 434, 467, 1275, 1947, 2757
Bso31I	GGTCTC	1 cut(s)	2713
Bsp1286I	GDGCHC	9 cut(s)	351, 381, 423, 630, 1210, 1284, 1882, 1956, 2746
Bsp143I	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
Bsp19I	CCATGG	3 cut(s)	1050, 1722, 2298
BspACI	CCGC	7 cut(s)	241, 262, 472, 696, 1368, 2212, 2215
BspANI	GGCC	7 cut(s)	344, 368, 434, 467, 1275, 1947, 2757
BspCNI	CTCAG	2 cut(s)	340, 2941
BspHI	TCATGA	3 cut(s)	861, 1533, 2365
BspLI	GGNNCC	2 cut(s)	333, 2925
BspMAI	CTGCAG	1 cut(s)	2342
BspPI	GGATC	2 cut(s)	447, 2808
BspTNI	GGTCTC	1 cut(s)	2713
BsrBI	CCGCTC	2 cut(s)	696, 1368
BsrDI	GCAATG	7 cut(s)	383, 577, 904, 1576, 2140, 2163, 2545
BsrI	ACTGG	3 cut(s)	185, 1699, 2188
BssECI	CCNNGG	5 cut(s)	435, 462, 1050, 1722, 2298
BssMI	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
BssT1I	CCWWGG	5 cut(s)	435, 462, 1050, 1722, 2298
Bst2UI	CCWGG	5 cut(s)	662, 1104, 1357, 2029, 2868
Bst4CI	ACNGT	7 cut(s)	679, 1219, 1891, 2515, 2626, 2636, 2822
Bst6I	CTCTTC	4 cut(s)	215, 963, 1635, 2808
BstC8I	GCNNGC	2 cut(s)	2260, 2433
BstDEI	CTNAG	6 cut(s)	327, 2440, 2601, 2709, 2759, 2928
BstDSI	CCRYGG	3 cut(s)	1050, 1722, 2298
BstHHI	GCGC	2 cut(s)	904, 1576
BstKTI	GATC	5 cut(s)	442, 1193, 1865, 2173, 2803
BstMAI	GTCTC	7 cut(s)	313, 1327, 1999, 2032, 2275, 2583, 2713
BstMBI	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
BstMWI	GCNNNNNNNGC	5 cut(s)	385, 884, 1556, 1791, 2556
BstNI	CCWGG	5 cut(s)	662, 1104, 1357, 2029, 2868
BstSCI	CCNGG	5 cut(s)	660, 1102, 1355, 2027, 2866
BstSFI	CTRYAG	4 cut(s)	1117, 1789, 2338, 2632
BstSLI	GKGCMC	1 cut(s)	2746
BstV1I	GCAGC	6 cut(s)	251, 462, 874, 1033, 1546, 1705
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	2 cut(s)	1190, 1862
BstYI	RGATCY	2 cut(s)	1190, 1862
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	2 cut(s)	1302, 1974
BsuRI	GGCC	7 cut(s)	344, 368, 434, 467, 1275, 1947, 2757
BtgI	CCRYGG	3 cut(s)	1050, 1722, 2298
BtsI	GCAGTG	2 cut(s)	2046, 2347
BtsIMutI	CAGTG	8 cut(s)	178, 617, 2046, 2193, 2347, 2511, 2641, 2746
Cac8I	GCNNGC	2 cut(s)	2260, 2433
CciI	TCATGA	3 cut(s)	861, 1533, 2365
CfoI	GCGC	2 cut(s)	904, 1576
Cfr13I	GGNCC	4 cut(s)	331, 367, 1273, 1945
CsiI	ACCWGGT	1 cut(s)	1102
Csp6I	GTAC	3 cut(s)	788, 1460, 2529
CviQI	GTAC	3 cut(s)	788, 1460, 2529
DdeI	CTNAG	6 cut(s)	327, 2440, 2601, 2709, 2759, 2928
DpnI	GATC	5 cut(s)	441, 1192, 1864, 2172, 2802
DpnII	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
DriI	GACNNNNNGTC	1 cut(s)	2187
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	4 cut(s)	215, 963, 1635, 2808
Eam1105I	GACNNNNNGTC	1 cut(s)	2187
EarI	CTCTTC	4 cut(s)	215, 963, 1635, 2808
Ecl136II	GAGCTC	4 cut(s)	379, 421, 1282, 1954
Eco130I	CCWWGG	5 cut(s)	435, 462, 1050, 1722, 2298
Eco147I	AGGCCT	1 cut(s)	2757
Eco24I	GRGCYC	4 cut(s)	381, 423, 1284, 1956
Eco31I	GGTCTC	1 cut(s)	2713
Eco32I	GATATC	2 cut(s)	2305, 2563
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	4 cut(s)	379, 421, 1282, 1954
Eco57I	CTGAAG	2 cut(s)	641, 2569
Eco81I	CCTNAGG	1 cut(s)	327
EcoICRI	GAGCTC	4 cut(s)	379, 421, 1282, 1954
EcoO109I	RGGNCCY	2 cut(s)	331, 367
EcoRII	CCWGG	5 cut(s)	660, 1102, 1355, 2027, 2866
EcoRV	GATATC	2 cut(s)	2305, 2563
EcoT14I	CCWWGG	5 cut(s)	435, 462, 1050, 1722, 2298
EcoT38I	GRGCYC	4 cut(s)	381, 423, 1284, 1956
ErhI	CCWWGG	5 cut(s)	435, 462, 1050, 1722, 2298
Esp3I	CGTCTC	1 cut(s)	313
FaqI	GGGAC	5 cut(s)	444, 1274, 1946, 2175, 2468
FauI	CCCGC	2 cut(s)	248, 269
FbaI	TGATCA	1 cut(s)	2170
Fnu4HI	GCNGC	8 cut(s)	265, 473, 476, 888, 1047, 1560, 1719, 2215
FriOI	GRGCYC	4 cut(s)	381, 423, 1284, 1956
Fsp4HI	GCNGC	8 cut(s)	265, 473, 476, 888, 1047, 1560, 1719, 2215
FspBI	CTAG	2 cut(s)	1032, 1704
GlaI	GCGC	2 cut(s)	903, 1575
GluI	GCNGC	8 cut(s)	265, 473, 476, 888, 1047, 1560, 1719, 2215
GsaI	CCCAGC	3 cut(s)	219, 504, 2292
GsuI	CTGGAG	1 cut(s)	2415
HaeIII	GGCC	7 cut(s)	344, 368, 434, 467, 1275, 1947, 2757
HapII	CCGG	2 cut(s)	2241, 2915
HhaI	GCGC	2 cut(s)	904, 1576
Hin6I	GCGC	2 cut(s)	902, 1574
HinP1I	GCGC	2 cut(s)	902, 1574
HincII	GTYRAC	1 cut(s)	2181
HindII	GTYRAC	1 cut(s)	2181
HpaII	CCGG	2 cut(s)	2241, 2915
Hpy166II	GTNNAC	2 cut(s)	2181, 2209
Hpy188I	TCNGA	7 cut(s)	403, 453, 1128, 1800, 2175, 2588, 2619
Hpy188III	TCNNGA	9 cut(s)	329, 862, 1211, 1534, 1883, 2272, 2366, 2394, 2828
Hpy8I	GTNNAC	2 cut(s)	2181, 2209
Hpy99I	CGWCG	2 cut(s)	119, 635
HpyCH4III	ACNGT	7 cut(s)	679, 1219, 1891, 2515, 2626, 2636, 2822
HpyCH4IV	ACGT	2 cut(s)	447, 2735
HpyF10VI	GCNNNNNNNGC	5 cut(s)	385, 884, 1556, 1791, 2556
HpyF3I	CTNAG	6 cut(s)	327, 2440, 2601, 2709, 2759, 2928
HpySE526I	ACGT	2 cut(s)	447, 2735
HspAI	GCGC	2 cut(s)	902, 1574
Ksp22I	TGATCA	1 cut(s)	2170
Kzo9I	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
Lsp1109I	GCAGC	6 cut(s)	251, 462, 874, 1033, 1546, 1705
LweI	GCATC	9 cut(s)	604, 1033, 1705, 1794, 2188, 2245, 2399, 2478, 2601
MabI	ACCWGGT	1 cut(s)	1102
MaeI	CTAG	2 cut(s)	1032, 1704
MaeII	ACGT	2 cut(s)	447, 2735
MaeIII	GTNAC	7 cut(s)	1219, 1891, 2101, 2137, 2413, 2518, 2953
MalI	GATC	5 cut(s)	441, 1192, 1864, 2172, 2802
MbiI	CCGCTC	2 cut(s)	696, 1368
MboI	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
MflI	RGATCY	2 cut(s)	1190, 1862
MhlI	GDGCHC	9 cut(s)	351, 381, 423, 630, 1210, 1284, 1882, 1956, 2746
MlsI	TGGCCA	1 cut(s)	434
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	116, 2034
MmeI	TCCRAC	2 cut(s)	78, 187
Mox20I	TGGCCA	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	2862
MscI	TGGCCA	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	1055, 1727
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	2241, 2915
MspR9I	CCNGG	5 cut(s)	662, 1104, 1357, 2029, 2868
MvaI	CCWGG	5 cut(s)	662, 1104, 1357, 2029, 2868
MwoI	GCNNNNNNNGC	5 cut(s)	385, 884, 1556, 1791, 2556
NcoI	CCATGG	3 cut(s)	1050, 1722, 2298
NdeII	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
NlaIV	GGNNCC	2 cut(s)	333, 2925
NmuCI	GTSAC	6 cut(s)	1219, 1891, 2101, 2137, 2518, 2953
PagI	TCATGA	3 cut(s)	861, 1533, 2365
PceI	AGGCCT	1 cut(s)	2757
PdmI	GAANNNNTTC	1 cut(s)	2862
PfeI	GAWTC	8 cut(s)	316, 542, 703, 1375, 2326, 2362, 2536, 2580
PkrI	GCNGC	8 cut(s)	266, 474, 477, 889, 1048, 1561, 1720, 2216
PleI	GAGTC	2 cut(s)	116, 2034
PpsI	GAGTC	2 cut(s)	116, 2034
PpuMI	RGGWCCY	1 cut(s)	331
PshBI	ATTAAT	2 cut(s)	1014, 1686
PsiI	TTATAA	2 cut(s)	995, 1667
Psp124BI	GAGCTC	4 cut(s)	381, 423, 1284, 1956
Psp1406I	AACGTT	2 cut(s)	447, 2735
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	5 cut(s)	660, 1102, 1355, 2027, 2866
PspFI	CCCAGC	3 cut(s)	215, 500, 2288
PspGI	CCWGG	5 cut(s)	660, 1102, 1355, 2027, 2866
PspN4I	GGNNCC	2 cut(s)	333, 2925
PspPI	GGNCC	4 cut(s)	331, 367, 1273, 1945
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	2342
PsuI	RGATCY	2 cut(s)	1190, 1862
RsaI	GTAC	3 cut(s)	789, 1461, 2530
RsaNI	GTAC	3 cut(s)	788, 1460, 2529
RseI	CAYNNNNRTG	2 cut(s)	1055, 1727
SacI	GAGCTC	4 cut(s)	381, 423, 1284, 1956
SatI	GCNGC	8 cut(s)	265, 473, 476, 888, 1047, 1560, 1719, 2215
Sau3AI	GATC	5 cut(s)	439, 1190, 1862, 2170, 2800
Sau96I	GGNCC	4 cut(s)	331, 367, 1273, 1945
SchI	GAGTC	2 cut(s)	116, 2034
ScrFI	CCNGG	5 cut(s)	662, 1104, 1357, 2029, 2868
SduI	GDGCHC	9 cut(s)	351, 381, 423, 630, 1210, 1284, 1882, 1956, 2746
SexAI	ACCWGGT	1 cut(s)	1102
SfaNI	GCATC	9 cut(s)	604, 1033, 1705, 1794, 2188, 2245, 2399, 2478, 2601
SfcI	CTRYAG	4 cut(s)	1117, 1789, 2338, 2632
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	1055, 1727
SmlI	CTYRAG	2 cut(s)	2054, 2904
SmoI	CTYRAG	2 cut(s)	2054, 2904
SseBI	AGGCCT	1 cut(s)	2757
SsiI	CCGC	7 cut(s)	241, 262, 472, 696, 1368, 2212, 2215
SspI	AATATT	3 cut(s)	1231, 1903, 2146
SspMI	CTAG	2 cut(s)	1032, 1704
SstI	GAGCTC	4 cut(s)	381, 423, 1284, 1956
StuI	AGGCCT	1 cut(s)	2757
StyD4I	CCNGG	5 cut(s)	660, 1102, 1355, 2027, 2866
StyI	CCWWGG	5 cut(s)	435, 462, 1050, 1722, 2298
TaaI	ACNGT	7 cut(s)	679, 1219, 1891, 2515, 2626, 2636, 2822
TaiI	ACGT	2 cut(s)	450, 2738
TaqI	TCGA	9 cut(s)	300, 363, 442, 540, 630, 706, 1378, 2273, 2565
TauI	GCSGC	2 cut(s)	475, 2217
TfiI	GAWTC	8 cut(s)	316, 542, 703, 1375, 2326, 2362, 2536, 2580
TscAI	CASTG	8 cut(s)	185, 624, 2053, 2200, 2347, 2518, 2641, 2746
TseFI	GTSAC	6 cut(s)	1219, 1891, 2101, 2137, 2518, 2953
TseI	GCWGC	6 cut(s)	264, 475, 887, 1046, 1559, 1718
Tsp45I	GTSAC	6 cut(s)	1219, 1891, 2101, 2137, 2518, 2953
TspGWI	ACGGA	2 cut(s)	882, 1554
TspRI	CASTG	8 cut(s)	185, 624, 2053, 2200, 2347, 2518, 2641, 2746
VpaK11BI	GGWCC	1 cut(s)	331
VspI	ATTAAT	2 cut(s)	1014, 1686
XapI	RAATTY	2 cut(s)	293, 752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2942
XmnI	GAANNNNTTC	1 cut(s)	2862
XspI	CTAG	2 cut(s)	1032, 1704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.