Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

10374713 .. 10377379

Gene Structure 2667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGAGTATCATGCTATCAATTTCCCGGCGCCAGAACTCTTATATTCTGCTCAACCATTCTCGATTCCTCCGGCGTTTTTCTTATGATGTTGACCCACGGCCGGAAATCAAATCGGAGAGCCAGGAATTTGTAGTAGTCAAATTTGTGAAAACTCTTCAAAATACCCCGCAACATGATTGGGCGTCGAGCGAGTCGCTAAGTGCGCTTGTCGTATCTTCTTCTTCTGCTTCTCCTTTAGTATTCTCGCAAATCACGCGGCGGCTAGGATCGTATTCTCTAGCAATCTCGTTCTTCGAGTACCTGGATGCGAAGTCTCAGTCTCTGAAACGCCGTGAAGAATCTCTCTCCTTGGCGCTTCAGTCGGTCATTGAATTCGCCGGTAGTGAACCGGACCCGCGTGATAAACTTCTCCGTCTCTACGAGATCGCCAAAGAGAAGAACATTCCTCTTACTATCGTTGCCACTAAGCTTCTGATCCGATGGTTTGGGCGTATGGGTATGGTGAATCAGTCGGTTCTTGTATACGAAAGACTCGATTCGAATATGAAAAACTCGCAGGTTCGTAATGTTGTGGTAGACGTCTTGCTAAGAAATGGACTTGTGGATGATGCCTTCAAGGTGCTCGACGAAATGCTTCAGAAAGAATCTGTTTTTCCTCCTAATAGAATCACAGCGGATATTGTGTTACACGAGGTTTGGAAGGAAAGGCTTTTGACAGAAGAAAAGATAATTGCTTTGATTTCAAGATTTAGCTCTCATGGTGTCTCCCCAAACTCTGTTTGGTTGACTCGGTTTATATCAAGTCTATGCAAAAATGCTCGCGCCAATACTGCTTGGGATATTTTGAGCGACCTGATGAAGAACAAAACCCCACTTGAAGCTCCTCCCTTCAATGCGCTTTTGTCTTGCTTAGGAAGGAATATGGACATTAGTAGAATGAATGATTTAGTCTTGAAGATGGATGAGGTGAAAATCCGGCCTGATGTTGTGACTTTAGGGATTCTTATTAACACTTTATGCAAATCAAGAAGGGTAGATGAAGCTCTCGAAGTTTTTGAACAAATGCGTGGAAAGAGAACTGATGATGGAAATGTGATTAAAGCTGATTCGATTCATTTTAATACTCTCATTGACGGGCTCTGCAAGGTGGGGAGGTTGAAAGAAGCAGAGGAGTTATTGGTAAGGATGAAACTGGAAGAGAGATGTGTGCCCAATGCAGTTACTTACAATTGCTTGATTGATGGGTATTGCAGAGCTGGAAAGCTTGAGACGGCTAAAGAAGTCGTTTCTCGGATGAAAGAGGACGAGATTAAACCTAATGTGGTAACTGTTAATACAATCGTTGGTGGGATGTGCAGGCACCATGGATTGAACATGGCGGTTGTTTTCTTTATGGATATGGAAAAGGAAGGCGTGAAAGGGAATGTGGTTACTTATATGACATTGATTCATGCTTGTTGCAGCGTCAGTAATGTAGAGAAGGCTATGTATTGGTATGAAAAAATGTTGGAAGCTGGTTGTTCTCCTGATGCAAAGATCTATTATGCTTTGATCTCTGGATTGTGCCAAGTTAGACGGGATCATGACGCCATTAGAGTGGTGGAGAAACTGAAAGAAGGAGGGTTTTCTCTTGACTTATTGGCTTACAACATGCTTATTGGGTTGTTTTGTGATAAGAATAATGCAGAGAAAGTCTATGAGATGCTAACCGATATGGAAAAAGAAGGGAAGAAACCTGATTCCATCACTTACAACACTCTGATTTCGTTTTTCGGTAAACACAAGGACTTCGAGAGTGTTGAGAGAATGATGGAGCAGATGAGAGAAGACGGGTTAGACCCGACTGTCACGACATATGGAGCGGTGATTGACGCTTATTGCTCAGTCGGCGAATTAGACGAAGCATTGAAGCTCTTTAAGGACATGGGTTTGCACTCAAAGGTCAATCCGAACACTGTAATATACAACATTCTCATAAACGCATTTTCTAAGCTGGGGAATTTCGGGCAAGCGCTCTCTCTGAAAGAGGAAATGAAGATGAAGATGGTGAGACCTAATGTTGAAACTTACAATGCCTTGTTTAAGTGTCTTAACGAGAAAACCCAAGGAGAGACATTACTTAAACTGATGGATGAGATGGTCGAACAGTCTTGTGAACCAAATCAGATCACAATGGAGATTCTAATGGAGCGTCTCTCAGGTTCTGATGAGTTAGTTAAGCTGAGGAAGTTTATGCAAGGCTACTCTGTTGCTTCGCCGACCGAGAAAGCTTCACCTTTCGATGTCTTTAGCTTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

766

Amino Acids

86.96

Weight (kDa)

6.35

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	325 - 356	8.4e-11	PPR repeat
PPR_2	PF13041	327 - 358	3.4e-06	PPR repeat family
PPR_3	PF13812	366 - 414	3.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	367 - 397	7.8e-11	PPR repeat
PPR_2	PF13041	369 - 409	2.1e-08	PPR repeat family
PPR	PF01535	372 - 397	1e-06	PPR repeat
PPR_1	PF12854	402 - 433	6.2e-14	PPR repeat
PPR_2	PF13041	404 - 453	1.3e-16	PPR repeat family
PPR_3	PF13812	405 - 449	8.6e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	406 - 501	2.5e-09	Fungal tetratrico peptide repeats
PPR	PF01535	407 - 436	5.7e-09	PPR repeat
PPR_2	PF13041	439 - 487	9.1e-14	PPR repeat family
PPR_long	PF17177	455 - 591	2.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	464 - 519	1.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	475 - 523	4.2e-12	PPR repeat family
PPR	PF01535	477 - 507	5.1e-06	PPR repeat
PPR_long	PF17177	530 - 640	9.1e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	530 - 642	2.1e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	532 - 593	6.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	546 - 589	5.4e-11	PPR repeat family
PPR_3	PF13812	568 - 626	1.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	579 - 627	2.9e-12	PPR repeat family
PPR_long	PF17177	598 - 732	8.5e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	603 - 663	4.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	610 - 642	8.8e-10	PPR repeat
PPR_2	PF13041	614 - 642	3.3e-06	PPR repeat family
PPR	PF01535	618 - 642	1e-06	PPR repeat
PPR_1	PF12854	648 - 679	3.5e-06	PPR repeat
PPR_2	PF13041	650 - 697	1.2e-13	PPR repeat family
PPR_3	PF13812	673 - 730	3.8e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1844
AatII	GACGTC	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	547
AccB1I	GGYRCC	2 cut(s)	27, 1359
AccBSI	CCGCTC	1 cut(s)	1862
AccI	GTMKAC	2 cut(s)	522, 576
AccII	CGCG	3 cut(s)	256, 397, 822
AciI	CCGC	7 cut(s)	167, 256, 259, 395, 674, 1379, 1862
AclWI	GGATC	3 cut(s)	274, 469, 1587
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	4 cut(s)	125, 140, 371, 1999
AcuI	CTGAAG	2 cut(s)	341, 620
AcyI	GRCGYC	4 cut(s)	28, 182, 579, 1587
AfaI	GTAC	1 cut(s)	299
AfeI	AGCGCT	1 cut(s)	2013
AfiI	CCNNNNNNNGG	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	120, 300
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	8 cut(s)	318, 324, 419, 769, 1262, 2044, 2105, 2198
AlwI	GGATC	3 cut(s)	274, 469, 1587
AlwNI	CAGNNNCTG	2 cut(s)	322, 2204
Aor51HI	AGCGCT	1 cut(s)	2013
AoxI	GGCC	2 cut(s)	98, 977
ApeKI	GCWGC	1 cut(s)	1461
ApoI	RAATTY	4 cut(s)	125, 140, 371, 1999
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	6 cut(s)	30, 205, 355, 824, 898, 2014
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	5 cut(s)	514, 979, 1876, 2059, 2265
AsuII	TTCGAA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	1212
BanI	GGYRCC	2 cut(s)	27, 1359
BanII	GRGCYC	1 cut(s)	1140
BauI	CACGAG	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	1833
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	2222
BbvI	GCAGC	1 cut(s)	1473
BccI	CCATC	9 cut(s)	474, 952, 1079, 1235, 1751, 1804, 2038, 2122, 2131
BceAI	ACGGC	3 cut(s)	113, 315, 1287
BciT130I	CCWGG	2 cut(s)	122, 302
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	8 cut(s)	318, 324, 419, 769, 1262, 2044, 2105, 2198
BfaI	CTAG	2 cut(s)	263, 278
BfoI	RGCGCY	3 cut(s)	31, 356, 2015
BfuAI	ACCTGC	1 cut(s)	547
BglII	AGATCT	1 cut(s)	1536
BisI	GCNGC	3 cut(s)	257, 260, 1462
BlsI	GCNGC	3 cut(s)	258, 261, 1463
Bme1390I	CCNGG	3 cut(s)	25, 122, 302
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	3 cut(s)	29, 393, 1361
BmrFI	CCNGG	3 cut(s)	25, 122, 302
BmsI	GCATC	4 cut(s)	295, 598, 1519, 1692
BpiI	GAAGAC	1 cut(s)	1833
BplI	GAGNNNNNCTC	2 cut(s)	2180, 2212
Bpu10I	CCTNAGC	2 cut(s)	910, 2222
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	1286
BpuMI	CCSGG	1 cut(s)	25
BsaHI	GRCGYC	4 cut(s)	28, 182, 579, 1587
BsaI	GGTCTC	1 cut(s)	2044
BsaJI	CCNNGG	4 cut(s)	95, 348, 1363, 2104
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	1197
BseBI	CCWGG	2 cut(s)	122, 302
BseDI	CCNNGG	4 cut(s)	95, 348, 1363, 2104
BseGI	GGATG	7 cut(s)	310, 610, 967, 1191, 1299, 1356, 2137
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	329, 1896, 2211, 2213
BseNI	ACTGG	1 cut(s)	1197
BseRI	GAGGAG	2 cut(s)	873, 1184
BseSI	GKGCMC	1 cut(s)	1212
BseX3I	CGGCCG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	1473
BseYI	CCCAGC	1 cut(s)	1993
BsgI	GTGCAG	1 cut(s)	1375
Bsh1236I	CGCG	3 cut(s)	256, 397, 822
Bsh1285I	CGRYCG	2 cut(s)	101, 2262
BshFI	GGCC	2 cut(s)	100, 979
BshNI	GGYRCC	2 cut(s)	27, 1359
BsiEI	CGRYCG	2 cut(s)	101, 2262
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	6 cut(s)	25, 70, 101, 378, 389, 976
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	8 cut(s)	318, 324, 419, 769, 1262, 2044, 2105, 2198
BsmBI	CGTCTC	3 cut(s)	419, 1262, 2198
BsnI	GGCC	2 cut(s)	100, 979
Bso31I	GGTCTC	1 cut(s)	2044
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	624, 1140, 1212
Bsp143I	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
Bsp19I	CCATGG	1 cut(s)	1363
BspACI	CCGC	7 cut(s)	167, 256, 259, 395, 674, 1379, 1862
BspANI	GGCC	2 cut(s)	100, 979
BspCNI	CTCAG	4 cut(s)	328, 1895, 2210, 2214
BspFNI	CGCG	3 cut(s)	256, 397, 822
BspHI	TCATGA	1 cut(s)	1582
BspLI	GGNNCC	3 cut(s)	29, 393, 1361
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	3 cut(s)	274, 469, 1587
BspT104I	TTCGAA	1 cut(s)	539
BspT107I	GGYRCC	2 cut(s)	27, 1359
BspTNI	GGTCTC	1 cut(s)	2044
BsrBI	CCGCTC	1 cut(s)	1862
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	1197
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	4 cut(s)	95, 348, 1363, 2104
BssMI	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
BssNAI	GTATAC	1 cut(s)	523
BssNI	GRCGYC	4 cut(s)	28, 182, 579, 1587
BssSI	CACGAG	1 cut(s)	689
BssT1I	CCWWGG	3 cut(s)	348, 1363, 2104
Bst1107I	GTATAC	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	122, 302
Bst4CI	ACNGT	4 cut(s)	1330, 1846, 1957, 2148
Bst6I	CTCTTC	2 cut(s)	159, 1191
BstACI	GRCGYC	4 cut(s)	28, 182, 579, 1587
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	820, 1358, 2010
BstDEI	CTNAG	9 cut(s)	197, 315, 465, 587, 910, 1882, 1989, 2197, 2222
BstDSI	CCRYGG	2 cut(s)	95, 1363
BstF5I	GGATG	7 cut(s)	310, 610, 967, 1191, 1299, 1356, 2137
BstFNI	CGCG	3 cut(s)	256, 397, 822
BstH2I	RGCGCY	3 cut(s)	31, 356, 2015
BstHHI	GCGC	6 cut(s)	30, 205, 355, 824, 898, 2014
BstKTI	GATC	7 cut(s)	269, 426, 477, 1539, 1554, 1582, 2169
BstMAI	GTCTC	8 cut(s)	318, 324, 419, 769, 1262, 2044, 2105, 2198
BstMBI	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
BstMCI	CGRYCG	2 cut(s)	101, 2262
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 253, 830, 1887
BstNI	CCWGG	2 cut(s)	122, 302
BstNSI	RCATGY	1 cut(s)	1654
BstSCI	CCNGG	3 cut(s)	23, 120, 300
BstSLI	GKGCMC	1 cut(s)	1212
BstUI	CGCG	3 cut(s)	256, 397, 822
BstV1I	GCAGC	1 cut(s)	1473
BstV2I	GAAGAC	1 cut(s)	1833
BstX2I	RGATCY	1 cut(s)	1536
BstXI	CCANNNNNNTGG	1 cut(s)	1597
BstYI	RGATCY	1 cut(s)	1536
BstZ17I	GTATAC	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	100, 979
BtgI	CCRYGG	2 cut(s)	95, 1363
BtsCI	GGATG	7 cut(s)	310, 610, 967, 1191, 1299, 1356, 2137
BtsIMutI	CAGTG	1 cut(s)	1953
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	3 cut(s)	820, 1358, 2010
CaiI	CAGNNNCTG	2 cut(s)	322, 2204
CciI	TCATGA	1 cut(s)	1582
CfoI	GCGC	6 cut(s)	30, 205, 355, 824, 898, 2014
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	5 cut(s)	171, 1453, 1595, 1880, 2180
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	9 cut(s)	10, 173, 758, 1364, 1375, 1451, 1583, 1651, 1924
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	9 cut(s)	197, 315, 465, 587, 910, 1882, 1989, 2197, 2222
DinI	GGCGCC	1 cut(s)	29
DpnI	GATC	7 cut(s)	268, 425, 476, 1538, 1553, 1581, 2168
DpnII	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
DrdI	GACNNNNNNGTC	1 cut(s)	1844
DseDI	GACNNNNNNGTC	1 cut(s)	1844
EaeI	YGGCCR	1 cut(s)	98
EagI	CGGCCG	1 cut(s)	98
Eam1104I	CTCTTC	2 cut(s)	159, 1191
EarI	CTCTTC	2 cut(s)	159, 1191
EclXI	CGGCCG	1 cut(s)	98
Eco130I	CCWWGG	3 cut(s)	348, 1363, 2104
Eco24I	GRGCYC	1 cut(s)	1140
Eco31I	GGTCTC	1 cut(s)	2044
Eco47I	GGWCC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	2013
Eco52I	CGGCCG	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	341, 620
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	120, 300
EcoT14I	CCWWGG	3 cut(s)	348, 1363, 2104
EcoT38I	GRGCYC	1 cut(s)	1140
EgeI	GGCGCC	1 cut(s)	29
EheI	GGCGCC	1 cut(s)	29
ErhI	CCWWGG	3 cut(s)	348, 1363, 2104
Esp3I	CGTCTC	3 cut(s)	419, 1262, 2198
FaeI	CATG	9 cut(s)	13, 176, 761, 1367, 1378, 1454, 1586, 1654, 1927
FatI	CATG	9 cut(s)	9, 172, 757, 1363, 1374, 1450, 1582, 1650, 1923
FauI	CCCGC	2 cut(s)	174, 402
FauNDI	CATATG	1 cut(s)	1855
FblI	GTMKAC	2 cut(s)	522, 576
Fnu4HI	GCNGC	3 cut(s)	257, 260, 1462
FokI	GGATG	7 cut(s)	317, 617, 974, 1198, 1306, 1363, 2144
FriOI	GRGCYC	1 cut(s)	1140
Fsp4HI	GCNGC	3 cut(s)	257, 260, 1462
FspBI	CTAG	2 cut(s)	263, 278
GlaI	GCGC	6 cut(s)	29, 204, 354, 823, 897, 2013
GluI	GCNGC	3 cut(s)	257, 260, 1462
GsaI	CCCAGC	1 cut(s)	1997
HaeII	RGCGCY	3 cut(s)	31, 356, 2015
HaeIII	GGCC	2 cut(s)	100, 979
HapII	CCGG	6 cut(s)	25, 70, 101, 378, 389, 976
HgaI	GACGC	5 cut(s)	171, 1453, 1595, 1880, 2180
HhaI	GCGC	6 cut(s)	30, 205, 355, 824, 898, 2014
Hin1I	GRCGYC	4 cut(s)	28, 182, 579, 1587
Hin1II	CATG	9 cut(s)	13, 176, 761, 1367, 1378, 1454, 1586, 1654, 1927
Hin6I	GCGC	6 cut(s)	28, 203, 353, 822, 896, 2012
HinP1I	GCGC	6 cut(s)	28, 203, 353, 822, 896, 2012
HincII	GTYRAC	2 cut(s)	91, 786
HindII	GTYRAC	2 cut(s)	91, 786
HindIII	AAGCTT	3 cut(s)	467, 1262, 2268
HpaII	CCGG	6 cut(s)	25, 70, 101, 378, 389, 976
HphI	GGTGA	5 cut(s)	514, 979, 1876, 2059, 2265
Hpy166II	GTNNAC	7 cut(s)	91, 386, 523, 577, 786, 1778, 2156
Hpy8I	GTNNAC	7 cut(s)	91, 386, 523, 577, 786, 1778, 2156
Hpy99I	CGWCG	2 cut(s)	187, 629
HpyAV	CCTTC	9 cut(s)	622, 694, 898, 909, 1023, 1403, 1474, 1610, 1718
HpyCH4III	ACNGT	4 cut(s)	1330, 1846, 1957, 2148
HpyCH4IV	ACGT	1 cut(s)	579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 253, 830, 1887
HpyF3I	CTNAG	9 cut(s)	197, 315, 465, 587, 910, 1882, 1989, 2197, 2222
HpySE526I	ACGT	1 cut(s)	579
Hsp92I	GRCGYC	4 cut(s)	28, 182, 579, 1587
Hsp92II	CATG	9 cut(s)	13, 176, 761, 1367, 1378, 1454, 1586, 1654, 1927
HspAI	GCGC	6 cut(s)	28, 203, 353, 822, 896, 2012
KasI	GGCGCC	1 cut(s)	27
Kzo9I	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
LmnI	GCTCC	4 cut(s)	886, 1813, 1859, 2188
Lsp1109I	GCAGC	1 cut(s)	1473
LweI	GCATC	4 cut(s)	295, 598, 1519, 1692
MaeI	CTAG	2 cut(s)	263, 278
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	6 cut(s)	684, 988, 1219, 1324, 1429, 1846
MalI	GATC	7 cut(s)	268, 425, 476, 1538, 1553, 1581, 2168
MbiI	CCGCTC	1 cut(s)	1862
MboI	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
MfeI	CAATTG	1 cut(s)	1228
MflI	RGATCY	1 cut(s)	1536
MhlI	GDGCHC	3 cut(s)	624, 1140, 1212
MluCI	AATT	8 cut(s)	18, 125, 140, 371, 729, 1228, 1892, 1999
Mly113I	GGCGCC	1 cut(s)	28
MlyI	GAGTC	3 cut(s)	200, 525, 781
MmeI	TCCRAC	1 cut(s)	1488
MroXI	GAANNNNTTC	1 cut(s)	633
MslI	CAYNNNNRTG	1 cut(s)	1595
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	6 cut(s)	25, 70, 101, 378, 389, 976
MspR9I	CCNGG	3 cut(s)	25, 122, 302
MunI	CAATTG	1 cut(s)	1228
MvaI	CCWGG	2 cut(s)	122, 302
MvnI	CGCG	3 cut(s)	256, 397, 822
MwoI	GCNNNNNNNGC	4 cut(s)	202, 253, 830, 1887
NarI	GGCGCC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	1363
NdeI	CATATG	1 cut(s)	1855
NdeII	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
NlaIII	CATG	9 cut(s)	13, 176, 761, 1367, 1378, 1454, 1586, 1654, 1927
NlaIV	GGNNCC	3 cut(s)	29, 393, 1361
NmuCI	GTSAC	2 cut(s)	988, 1846
NspI	RCATGY	1 cut(s)	1654
NspV	TTCGAA	1 cut(s)	539
PagI	TCATGA	1 cut(s)	1582
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	633
PkrI	GCNGC	3 cut(s)	258, 261, 1463
PleI	GAGTC	3 cut(s)	199, 525, 781
PluTI	GGCGCC	1 cut(s)	31
PpsI	GAGTC	3 cut(s)	199, 525, 781
Psp6I	CCWGG	2 cut(s)	120, 300
PspFI	CCCAGC	1 cut(s)	1993
PspGI	CCWGG	2 cut(s)	120, 300
PspN4I	GGNNCC	3 cut(s)	29, 393, 1361
PspPI	GGNCC	1 cut(s)	391
PstNI	CAGNNNCTG	2 cut(s)	322, 2204
PsuI	RGATCY	1 cut(s)	1536
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	1595
SatI	GCNGC	3 cut(s)	257, 260, 1462
Sau3AI	GATC	7 cut(s)	266, 423, 474, 1536, 1551, 1579, 2166
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	3 cut(s)	200, 525, 781
ScrFI	CCNGG	3 cut(s)	25, 122, 302
SduI	GDGCHC	3 cut(s)	624, 1140, 1212
SfaNI	GCATC	4 cut(s)	295, 598, 1519, 1692
SfoI	GGCGCC	1 cut(s)	29
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	1595
SmlI	CTYRAG	1 cut(s)	1265
SmoI	CTYRAG	1 cut(s)	1265
Sse9I	AATT	8 cut(s)	18, 125, 140, 371, 729, 1228, 1892, 1999
SsiI	CCGC	7 cut(s)	167, 256, 259, 395, 674, 1379, 1862
SspDI	GGCGCC	1 cut(s)	27
SspMI	CTAG	2 cut(s)	263, 278
StyD4I	CCNGG	3 cut(s)	23, 120, 300
StyI	CCWWGG	3 cut(s)	348, 1363, 2104
TaaI	ACNGT	4 cut(s)	1330, 1846, 1957, 2148
TaiI	ACGT	1 cut(s)	582
TaqII	GACCGA	2 cut(s)	352, 2276
TasI	AATT	8 cut(s)	18, 125, 140, 371, 729, 1228, 1892, 1999
TauI	GCSGC	2 cut(s)	259, 262
TscAI	CASTG	1 cut(s)	1960
TseFI	GTSAC	2 cut(s)	988, 1846
TseI	GCWGC	1 cut(s)	1461
Tsp45I	GTSAC	2 cut(s)	988, 1846
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	1960
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	4 cut(s)	125, 140, 371, 1999
XceI	RCATGY	1 cut(s)	1654
XcmI	CCANNNNNNNNNTGG	2 cut(s)	777, 1597
XmiI	GTMKAC	2 cut(s)	522, 576
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	263, 278
ZraI	GACGTC	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.