Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

49063012 .. 49064364

Gene Structure 1353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGAGTGAGCTTATGGTGAAGATGGAAGAGATGGGCATTAAGCCCGATGTTATAACTTTTGGTATTCTTATCAATCGGTTATGCAAGTCTAGGAGAATAGATGCTGCCTTGGAGGTGTTTGAAAAGATGAGTGGAGGAGTAAATGGGGTTTCGGCTGAACCAGATGTGATCATCTATAACACTCTGATTGATGGACTTTGCAAAGTGGGAAGGCAGGAAGAAGGATTGCGTTTGATGGAAAGGATGAGATCGCAAGGTGGCTGTGCTCCTAACACTGTTACCTACAATTGTTTGATTGATGGCTTCAACAAAGTTGGGGACATTGAGAGGGGCCGTGCGCTCTTTGATAAAATGAAGGAGGAAGGGATACCACTAAATGTGGCCACCGTTAATACTTTGCTTGATGGTCTGTGCAGGCATGGGAGACTCAACACTGCATTTGACTTCTTTAATGAAATGCGGAGGGATGGTCTGAAAGGCAATGCTGTCACTTACACAATCTTAATCACTTCCTTTTGTAATGTGAACAATATTAGCAAGGCAATGGAGTTGTTTAATCAGATGTTGAGCGCTGAATGTCCCACAGATGCAATAGTTTACCACTGCTTGATCTCTGGTTTAAGTCAAGCTGGAAGGATGGAGGATGCCAGCTTTGTTGTTTCAAAGTTGAAGGAGGCTGGTTTCTCTATGGATATCGTTTCCTACAATGTTATGATTAATGGGTTCTCCAGTAAAAATAAGCCTGATAAGATTCATGAGATGATTGAGGAAATGGAGGCGTCTGGAGTGAAGCCTAATAGCGTAACATACAACACGTTGCTTGCCTACTTAAGCAAAGCTGGGGACTTCAAAAGTGCACATAAAGTACTTGACAGGATGATGGATGAGGGTATTGCTCCCACTGTTGTCACTTTTGGTACATTGATTCATGCACATTGCTTGGATGGTGATATCGACAAAGCCATGAGAATCTTCAGAGACATGGATTCTAAGTCAAAGATACCTCCGAATACTGTAATATACAGTGATTTAATAAATTCTCTCTGCAAGAAGAATGATGTAGAACAAGCTCTTTATTTGATGGAGGATATGAAGGAGAAAGGGGTGAGACCTAATACCCAAACGTTCAATGCCCTGTTCAAAGGCCTTAGAGAGAACAATTTATTAAAGAAGGCATTTCAATTTATGGATCGAATGGTTGAACAGGCCTGTAATCCTGATTATATGACGATGGAGATTCTTACTGAATGGCTTTCTGATGTTGGTGAAATAGAGAGGTTGAGAAAGTTTGTTCAAGGATATCCGGTTTCAAAGCCTCCGCCCCAACAGAAGGATGGGATAGTCGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

450

Amino Acids

50.4

Weight (kDa)

5.72

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	11 - 44	1.3e-11	PPR repeat
PPR_3	PF13812	53 - 100	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	53 - 83	6e-10	PPR repeat
PPR_2	PF13041	54 - 103	1.8e-15	PPR repeat family
PPR_1	PF12854	87 - 119	2.1e-09	PPR repeat
PPR_2	PF13041	90 - 139	6.8e-16	PPR repeat family
TPR_24	PF23276	91 - 187	7.6e-07	Fungal tetratrico peptide repeats
PPR	PF01535	93 - 123	1.3e-07	PPR repeat
PPR_long	PF17177	107 - 227	3.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	122 - 154	1.6e-11	PPR repeat
PPR_2	PF13041	126 - 174	4.3e-18	PPR repeat family
PPR	PF01535	129 - 158	8.7e-08	PPR repeat
TPR_24	PF23276	139 - 244	1.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	157 - 188	7.5e-10	PPR repeat
PPR_2	PF13041	161 - 208	2.6e-11	PPR repeat family
PPR	PF01535	163 - 192	2.6e-06	PPR repeat
PPR_2	PF13041	196 - 242	8.5e-09	PPR repeat family
TPR_24	PF23276	210 - 327	4.3e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	231 - 274	4.7e-14	PPR repeat family
PPR	PF01535	233 - 263	2.4e-06	PPR repeat
PPR_long	PF17177	234 - 330	9.9e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	255 - 311	1.9e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	262 - 293	1.1e-07	PPR repeat
PPR_2	PF13041	265 - 313	6.2e-15	PPR repeat family
PPR_1	PF12854	297 - 328	4.6e-11	PPR repeat
PPR_2	PF13041	300 - 337	6.3e-07	PPR repeat family
PPR_long	PF17177	321 - 430	5.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	323 - 381	6.6e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	333 - 423	1.5e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	334 - 365	7.7e-08	PPR repeat
PPR_2	PF13041	336 - 383	5.6e-16	PPR repeat family
PPR	PF01535	339 - 369	6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AciI	CCGC	2 cut(s)	460, 1319
AclI	AACGTT	1 cut(s)	1124
AclWI	GGATC	1 cut(s)	1197
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	1036
AcuI	CTGAAG	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	779
AfaI	GTAC	2 cut(s)	867, 919
AfeI	AGCGCT	1 cut(s)	571
AfiI	CCNNNNNNNGG	1 cut(s)	1330
AflII	CTTAAG	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	813
AluBI	AGCT	5 cut(s)	10, 629, 651, 839, 1070
AluI	AGCT	5 cut(s)	10, 629, 651, 839, 1070
Alw21I	GWGCWC	2 cut(s)	268, 859
Alw26I	GTCTC	3 cut(s)	418, 972, 1102
Alw44I	GTGCAC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	1197
Aor51HI	AGCGCT	1 cut(s)	571
AoxI	GGCC	4 cut(s)	331, 381, 1144, 1206
ApaLI	GTGCAC	1 cut(s)	855
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	1036
AseI	ATTAAT	1 cut(s)	717
AspLEI	GCGC	2 cut(s)	340, 572
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	4 cut(s)	28, 959, 1117, 1277
BaeGI	GKGCMC	1 cut(s)	859
BalI	TGGCCA	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	268, 859
BbvI	GCAGC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	3 cut(s)	418, 972, 1102
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	573
BfrI	CTTAAG	1 cut(s)	829
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmcAI	AGTACT	1 cut(s)	867
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	332
BmsI	GCATC	3 cut(s)	91, 577, 634
BpmI	CTGGAG	2 cut(s)	712, 804
BsaHI	GRCGYC	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	1102
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	1303
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	1330
Bse1I	ACTGG	1 cut(s)	729
Bse3DI	GCAATG	3 cut(s)	487, 549, 934
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	8 cut(s)	249, 472, 642, 649, 882, 889, 949, 1339
BseLI	CCNNNNNNNGG	1 cut(s)	1330
BseMI	GCAATG	3 cut(s)	487, 549, 934
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	839
BsgI	GTGCAG	1 cut(s)	433
BshFI	GGCC	4 cut(s)	333, 383, 1146, 1208
BsiHKAI	GWGCWC	2 cut(s)	268, 859
BsiSI	CCGG	1 cut(s)	1304
BslFI	GGGAC	3 cut(s)	332, 564, 857
BslI	CCNNNNNNNGG	1 cut(s)	1330
BsmAI	GTCTC	3 cut(s)	418, 972, 1102
BsmFI	GGGAC	3 cut(s)	332, 564, 857
BsnI	GGCC	4 cut(s)	333, 383, 1146, 1208
Bso31I	GGTCTC	1 cut(s)	1102
Bsp1286I	GDGCHC	2 cut(s)	268, 859
Bsp143I	GATC	4 cut(s)	168, 248, 609, 1189
BspACI	CCGC	2 cut(s)	460, 1319
BspANI	GGCC	4 cut(s)	333, 383, 1146, 1208
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	1197
BspTI	CTTAAG	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	1102
BsrDI	GCAATG	3 cut(s)	487, 549, 934
BsrI	ACTGG	1 cut(s)	729
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	168, 248, 609, 1189
BssNI	GRCGYC	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	5 cut(s)	277, 388, 904, 1015, 1025
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	779
BstAFI	CTTAAG	1 cut(s)	829
BstC8I	GCNNGC	3 cut(s)	416, 649, 822
BstDEI	CTNAG	2 cut(s)	990, 1148
BstF5I	GGATG	8 cut(s)	249, 472, 642, 649, 882, 889, 949, 1339
BstH2I	RGCGCY	1 cut(s)	573
BstHHI	GCGC	2 cut(s)	340, 572
BstKTI	GATC	4 cut(s)	171, 251, 612, 1192
BstMAI	GTCTC	3 cut(s)	418, 972, 1102
BstMBI	GATC	4 cut(s)	168, 248, 609, 1189
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	333, 383, 1146, 1208
BtsCI	GGATG	8 cut(s)	249, 472, 642, 649, 882, 889, 949, 1339
BtsI	GCAGTG	2 cut(s)	432, 601
BtsIMutI	CAGTG	5 cut(s)	273, 432, 601, 900, 1030
Cac8I	GCNNGC	3 cut(s)	416, 649, 822
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	2 cut(s)	340, 572
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	866, 918
CviAII	CATG	5 cut(s)	419, 755, 929, 964, 982
CviQI	GTAC	2 cut(s)	866, 918
DdeI	CTNAG	2 cut(s)	990, 1148
DpnI	GATC	4 cut(s)	170, 250, 611, 1191
DpnII	GATC	4 cut(s)	168, 248, 609, 1189
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	1308
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	2 cut(s)	1146, 1208
Eco31I	GGTCTC	1 cut(s)	1102
Eco32I	GATATC	3 cut(s)	694, 952, 1301
Eco47III	AGCGCT	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	958
EcoRV	GATATC	3 cut(s)	694, 952, 1301
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	5 cut(s)	422, 758, 932, 967, 985
FaqI	GGGAC	3 cut(s)	332, 564, 857
FatI	CATG	5 cut(s)	418, 754, 928, 963, 981
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	8 cut(s)	256, 479, 649, 656, 889, 896, 956, 1346
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	339, 571
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	2 cut(s)	712, 804
HaeII	RGCGCY	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	333, 383, 1146, 1208
HapII	CCGG	1 cut(s)	1304
HgaI	GACGC	1 cut(s)	768
HhaI	GCGC	2 cut(s)	340, 572
Hin1I	GRCGYC	1 cut(s)	779
Hin1II	CATG	5 cut(s)	422, 758, 932, 967, 985
Hin6I	GCGC	2 cut(s)	338, 570
HinP1I	GCGC	2 cut(s)	338, 570
HinfI	GANTC	6 cut(s)	426, 751, 925, 969, 986, 1237
HpaII	CCGG	1 cut(s)	1304
HphI	GGTGA	4 cut(s)	28, 959, 1117, 1277
Hpy166II	GTNNAC	3 cut(s)	526, 598, 857
Hpy188I	TCNGA	6 cut(s)	186, 474, 561, 977, 1008, 1258
Hpy188III	TCNNGA	3 cut(s)	755, 783, 1217
Hpy8I	GTNNAC	3 cut(s)	526, 598, 857
HpyAV	CCTTC	9 cut(s)	204, 215, 349, 356, 627, 664, 1087, 1165, 1324
HpyCH4III	ACNGT	5 cut(s)	277, 388, 904, 1015, 1025
HpyCH4IV	ACGT	2 cut(s)	815, 1124
HpyCH4V	TGCA	8 cut(s)	84, 201, 414, 437, 590, 857, 932, 1047
HpyF3I	CTNAG	2 cut(s)	990, 1148
HpySE526I	ACGT	2 cut(s)	815, 1124
Hsp92I	GRCGYC	1 cut(s)	779
Hsp92II	CATG	5 cut(s)	422, 758, 932, 967, 985
HspAI	GCGC	2 cut(s)	338, 570
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	168, 248, 609, 1189
LmnI	GCTCC	2 cut(s)	271, 901
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	3 cut(s)	91, 577, 634
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	2 cut(s)	815, 1124
MaeIII	GTNAC	4 cut(s)	277, 487, 802, 907
MalI	GATC	4 cut(s)	170, 250, 611, 1191
MboI	GATC	4 cut(s)	168, 248, 609, 1189
MboII	GAAGA	5 cut(s)	31, 38, 230, 964, 1063
MfeI	CAATTG	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	268, 859
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	4 cut(s)	286, 1036, 1159, 1181
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	420
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	829
MspI	CCGG	1 cut(s)	1304
MunI	CAATTG	1 cut(s)	286
NdeII	GATC	4 cut(s)	168, 248, 609, 1189
NlaIII	CATG	5 cut(s)	422, 758, 932, 967, 985
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	2 cut(s)	487, 907
PagI	TCATGA	1 cut(s)	754
PceI	AGGCCT	2 cut(s)	1146, 1208
PfeI	GAWTC	5 cut(s)	751, 925, 969, 986, 1237
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PshBI	ATTAAT	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	1124
PspFI	CCCAGC	1 cut(s)	839
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	331
RsaI	GTAC	2 cut(s)	867, 919
RsaNI	GTAC	2 cut(s)	866, 918
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	4 cut(s)	168, 248, 609, 1189
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	867
SchI	GAGTC	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	268, 859
SfaNI	GCATC	3 cut(s)	91, 577, 634
SmlI	CTYRAG	1 cut(s)	829
SmoI	CTYRAG	1 cut(s)	829
Sse9I	AATT	4 cut(s)	286, 1036, 1159, 1181
SseBI	AGGCCT	2 cut(s)	1146, 1208
SsiI	CCGC	2 cut(s)	460, 1319
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	2 cut(s)	1146, 1208
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	5 cut(s)	277, 388, 904, 1015, 1025
TaiI	ACGT	2 cut(s)	818, 1127
TaqI	TCGA	2 cut(s)	954, 1192
TasI	AATT	4 cut(s)	286, 1036, 1159, 1181
TatI	WGTACW	1 cut(s)	865
TfiI	GAWTC	5 cut(s)	751, 925, 969, 986, 1237
TscAI	CASTG	5 cut(s)	280, 439, 608, 907, 1030
TseFI	GTSAC	2 cut(s)	487, 907
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	2 cut(s)	487, 907
TspDTI	ATGAA	5 cut(s)	368, 468, 743, 917, 1106
TspRI	CASTG	5 cut(s)	280, 439, 608, 907, 1030
Vha464I	CTTAAG	1 cut(s)	829
VneI	GTGCAC	1 cut(s)	855
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	1 cut(s)	1036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1331
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.