Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002582.1

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

55243 .. 55878

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002582.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgcctagatgtcggactggtttttcttcctcttggaggcatgaagtggagaccggtcctcctttatccaaaatagcaacggcggcggcaggacgaatcctgaaaggttctcgagttcgctgcaaatttccgattccaacagatttcggggttgcactgagtttgagtttgactggttgggtaggaagaagaggacgaaggggatggaaccgctttggcttccacttgaatagctttgtttggaagaccaaattagcagccaccattgccatcaaattagcagccaccattgccaattccaatctcagccccaatccgaaccaaccaccccaagatgacgattccgttataacccaagtgctccaactcctccaacccaatgagaaagactggaactttgaccagctccacaccctcctcttctccaactcaacctctccttcacctcaccctgtcttccacatcactcgcctcctcgacgctccgtcgaaagccatcaaattcttcgatttctccgaaaatgtgggaccaacaaccccttcaagctccaatagtttgctctcctccgcattccaggccgttctggagctcacattgcaacaacccacatcggaaaagaagcactttgatctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

211

Amino Acids

23.34

Weight (kDa)

9.94

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AciI	CCGC	4 cut(s)	83, 86, 211, 567
AcsI	RAATTY	2 cut(s)	125, 500
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	229, 543
AhdI	GACNNNNNGTC	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	523, 555
AluBI	AGCT	4 cut(s)	234, 406, 546, 589
AluI	AGCT	4 cut(s)	234, 406, 546, 589
Alw21I	GWGCWC	2 cut(s)	363, 591
Alw26I	GTCTC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	3 cut(s)	120, 257, 281
ApoI	RAATTY	2 cut(s)	125, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AsiGI	ACCGGT	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	56, 527
AsuHPI	GGTGA	2 cut(s)	435, 440
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	56, 527
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	251, 448
Bbv12I	GWGCWC	2 cut(s)	363, 591
BbvI	GCAGC	3 cut(s)	107, 269, 293
BccI	CCATC	3 cut(s)	198, 278, 503
BceAI	ACGGC	2 cut(s)	96, 563
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	5 cut(s)	84, 87, 121, 258, 282
BlsI	GCNGC	5 cut(s)	85, 88, 122, 259, 283
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	56, 527
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	56, 527
BmiI	GGNNCC	2 cut(s)	209, 528
BmrFI	CCNGG	1 cut(s)	575
BpiI	GAAGAC	2 cut(s)	251, 448
BpmI	CTGGAG	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	22, 178, 395
Bse3DI	GCAATG	3 cut(s)	264, 288, 593
BseBI	CCWGG	1 cut(s)	575
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMI	GCAATG	3 cut(s)	264, 288, 593
BseMII	CTCAG	2 cut(s)	149, 319
BseNI	ACTGG	3 cut(s)	22, 178, 395
BseRI	GAGGAG	4 cut(s)	359, 407, 464, 553
BseXI	GCAGC	3 cut(s)	107, 269, 293
BshFI	GGCC	1 cut(s)	578
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	363, 591
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	540
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	1 cut(s)	578
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	363, 591
Bsp143I	GATC	1 cut(s)	628
BspACI	CCGC	4 cut(s)	83, 86, 211, 567
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	150, 318
BspLI	GGNNCC	2 cut(s)	209, 528
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	3 cut(s)	264, 288, 593
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	22, 178, 395
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	575
Bst6I	CTCTTC	2 cut(s)	184, 425
BstDEI	CTNAG	2 cut(s)	158, 305
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	209
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 266, 290, 575, 595
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	573
BstV1I	GCAGC	3 cut(s)	107, 269, 293
BstV2I	GAAGAC	2 cut(s)	251, 448
BsuRI	GGCC	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	56, 527
CseI	GACGC	1 cut(s)	488
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	158, 305
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
DriI	GACNNNNNGTC	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	184, 425
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	2 cut(s)	184, 425
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	56, 527
Eco53kI	GAGCTC	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	1 cut(s)	44
FaiI	YATR	2 cut(s)	42, 350
FalI	AAGNNNNNCTT	1 cut(s)	608
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	1 cut(s)	40
Fnu4HI	GCNGC	5 cut(s)	84, 87, 121, 258, 282
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	5 cut(s)	84, 87, 121, 258, 282
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	5 cut(s)	84, 87, 121, 258, 282
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	3 cut(s)	96, 133, 341
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	435, 440
Hpy188I	TCNGA	5 cut(s)	15, 132, 318, 517, 613
Hpy188III	TCNNGA	3 cut(s)	100, 111, 584
Hpy99I	CGWCG	2 cut(s)	482, 490
HpyAV	CCTTC	3 cut(s)	192, 450, 549
HpyCH4V	TGCA	3 cut(s)	123, 155, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 266, 290, 575, 595
HpyF3I	CTNAG	2 cut(s)	158, 305
Hsp92II	CATG	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	5 cut(s)	366, 411, 487, 551, 586
Lsp1109I	GCAGC	3 cut(s)	107, 269, 293
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	7 cut(s)	18, 198, 201, 256, 412, 448, 496
MhlI	GDGCHC	2 cut(s)	363, 591
MluCI	AATT	5 cut(s)	125, 251, 275, 295, 500
MmeI	TCCRAC	4 cut(s)	161, 388, 397, 450
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	5 cut(s)	83, 266, 290, 575, 595
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	2 cut(s)	209, 528
PaeR7I	CTCGAG	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PctI	GAATGC	1 cut(s)	569
PfeI	GAWTC	3 cut(s)	96, 133, 341
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	85, 88, 122, 259, 283
PsiI	TTATAA	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	209, 528
PspPI	GGNCC	2 cut(s)	56, 527
SacI	GAGCTC	1 cut(s)	591
SatI	GCNGC	5 cut(s)	84, 87, 121, 258, 282
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	2 cut(s)	56, 527
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	2 cut(s)	363, 591
SetI	ASST	7 cut(s)	109, 236, 408, 437, 448, 548, 591
Sfr274I	CTCGAG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	56, 527
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	5 cut(s)	125, 251, 275, 295, 500
SsiI	CCGC	4 cut(s)	83, 86, 211, 567
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	573
TaqI	TCGA	4 cut(s)	112, 477, 488, 507
TasI	AATT	5 cut(s)	125, 251, 275, 295, 500
TauI	GCSGC	2 cut(s)	86, 89
TfiI	GAWTC	3 cut(s)	96, 133, 341
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	3 cut(s)	120, 257, 281
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	2 cut(s)	334, 474
TspRI	CASTG	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	56, 527
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	125, 500
XhoI	CTCGAG	1 cut(s)	111
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.