Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000874

Physical Location & Seq

Genomic Coordinates Forward (+)

52754406 .. 52754681

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG400900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCCAAGGACCATAATGTCCCCCTTAATGTCAAGGCCGCAGGTTTGCTTGTTCGGTCCATGGGGACGGCTGGGATGGAGGACGAGGCTCTCATAGTGTTTAACGAGCTTCATTTGGGGTTGAAAACTACTCACATTCGCAATGTGATGATTGGGATGTTGCTGAAGATTGGGCGAGGGGATGATGCACTGAAGGTGCTCGACGAAATGCTTCACCCAGAAGCGAAGTTTCGGGTTGATGATTTTATCGGCGATGTTGTGATTGGCGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

5.71

Isoelectric Point (pI)

24.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61520 AT5G28370 AT5G28460
fragaria_vesca	FvH4_5g03011 FvH4_5g03011 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_5g32150 FvH4_7g15360
malus_domestica	MD01G1071400.v1.1 MD07G1131300.v1.1
prunus_persica	Prupe.2G177500_v2.0.a1
pyrus_communis	pycom01g10040 pycom04g02360 pycom07g12830
rosa_chinensis	RchiOBHm_Chr1g0357681 RchiOBHm_Chr3g0468501 RchiOBHm_Chr5g0017031 RchiOBHm_Chr7g0228211 RchiOBHm_Chr7g0228281 RchiOBHm_Chr7g0228291
rosa_laevigata	RLG00000001577 RLG00000005833 RLG00000009015 RLG00000009124 RLG00000012161 RLG00000028007 RLG00000028484
rosa_multiflora	Rmu_sc0001062.1_g000004 Rmu_sc0001626.1_g000014 Rmu_sc0001626.1_g000015 Rmu_sc0002582.1_g000009 Rmu_sc0003490.1_g000025 Rmu_sc0003490.1_g000026 Rmu_sc0004842.1_g000011 Rmu_sc0004842.1_g000012 Rmu_sc0004842.1_g000020 Rmu_ssc0000425.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231300 Rroxscaffold_4G00298600 Rroxscaffold_6G00429570
rosa_rugosa	Rorug01G0257700 Rorug02G0051500 Rorug02G0572600 Rorug07G0246900.1 Rorug07G0247000 Rorug07G0247000
rosa_samantha	Rh1AG271700 Rh1BG238800 Rh1CG255600 Rh1DG267200 Rh3AG143700 Rh3BG166200 Rh3BG166300 Rh5AG043600 Rh7AG400900 Rh7AG401200 Rh7BG382400 Rh7CG420000 Rh7DG396900 Rh7DG397300
rosa_wichuraiana	Rw1G024230 Rw7G033300 Rw7G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	32
AciI	CCGC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	185, 212
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	3, 36
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	10, 57
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	10, 57
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	10, 57
BmgT120I	GGNCC	2 cut(s)	10, 57
BmsI	GCATC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	6, 60
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	6, 60
BseGI	GGATG	3 cut(s)	81, 162, 187
BseMI	GCAATG	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	2 cut(s)	5, 38
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	5, 79
BsmFI	GGGAC	2 cut(s)	5, 79
BsnI	GGCC	2 cut(s)	5, 38
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	5, 38
BspMI	ACCTGC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	6, 60
BssT1I	CCWWGG	2 cut(s)	6, 60
BstC8I	GCNNGC	1 cut(s)	271
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	81, 162, 187
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	5, 38
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	81, 162, 187
BtsIMutI	CAGTG	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	10, 57
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	5 cut(s)	5, 38, 71, 89, 109
CviKI_1	RGCY	5 cut(s)	5, 38, 71, 89, 109
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	6, 60
Eco47I	GGWCC	2 cut(s)	10, 57
Eco57I	CTGAAG	2 cut(s)	185, 212
EcoT14I	CCWWGG	2 cut(s)	6, 60
ErhI	CCWWGG	2 cut(s)	6, 60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	15, 62, 95
FaqI	GGGAC	2 cut(s)	5, 79
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	3 cut(s)	88, 169, 194
Fsp4HI	GCNGC	1 cut(s)	39
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	5, 38
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HphI	GGTGA	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	267
LpnPI	CCDG	3 cut(s)	27, 57, 231
LweI	GCATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	73, 79, 170
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	27, 102
Msp20I	TGGCCA	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	60
NlaIII	CATG	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	10, 57
SaqAI	TTAA	2 cut(s)	27, 102
SatI	GCNGC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	10, 57
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	3 cut(s)	46, 111, 198
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	2 cut(s)	10, 57
SsiI	CCGC	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	6, 60
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	45
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	27, 102
Tru9I	TTAA	2 cut(s)	27, 102
TscAI	CASTG	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	10, 57
XmnI	GAANNNNTTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.